Rw3G011620

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000423
Physical Location & Seq
Reverse (-)
11344383 .. 11346869
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011620.1

Sequence Viewer

Length: 1215 bp
ATGGTGGAAACGTCGACATTGTGTCCGTCGAAGACGGCGTCGTTTCTCTCAAGCTCCAAGGTTGTATTTTATGTATTCAGTCCAGCTCTGGTGGGAACTAACGTTGCCCAGACCATTACATATGACGGTATGATTAAACTGTGGTTTATGCCTGTGAACATCCTAATCACCTTCATTGTTGGTTCTGTACTTGGATGGATACTCATCCAATTAGCAAGACCACCTCCACATCTCCGAGGCCTCATTTTAGGATGCTGTGCGGCTGGAAATTTGGGGAACTTGCTCCTCATCATAATCCCAGCAGTCTGTAAAGAAAAGGGAAGCCCATTTGGAGCTCCTGATGTCTGTGACACTTATGGAATGGCTTATGCATCACTTTCAATGGCAGTAACCATTTATATTTGGTCCTATGTGTATAACATTGTGAGGATATCTTCAAAGAGGAGTACCCAAGACTCCCCCCAGTCTTTGAAGGAACCCTCCGAATCAAACCAAGTAAGTTGCACTGAGCCTCGGCTTTCTTCCAAGGAATATGGGATAGTAGCGGACAATCCCGATCAGTGTTCACTGCCCTGTACTATATCTCAACAAGACTCAAAGCTTCTAAACTTGATTATTAATTTGCATGATTTAATGCTCTCTGATTGTATAGAACCTCAGAGTAAATCCAAGAACTGTTTAGTGAGAATGTTTCAAATTCTAAATCTGAAAACGATATTTGCCCCTTCAACTATTGGAGCGATTGTTGGGTTTGCAATCGGAGTCATCCCTCAGATTCGTAAACTAATGATAGGAGATGGTGCTCCTCTAAGGGTGATCCTTGGCACTACTAACTTGTTGGGAGATGGAGCTATCCCCGCTCTCACTTTGATAATTGGAGGAAACCCCCTTAAAGGTTTGAGAGGGTCAGGAATACAGAAATCTATTGTTGTTGGGATCATAATCGTTCGTTACGTGTTCCTGCCTCTTACAGGCATATTGATCATTAAAGGGGCACTAAAATTTGGCCTAGTGCACTCTAATCCATTGTATCTTTTTGTTCTCCTTATTCAGTATACACTCCCACCTGCAATGAACATAGGAACGATCACCCAATTGTTCGGAGCAGGAGAGAACGAATGTTCAGTAATCCTGTTGTGGACTTATGTATTTGCAACAGTATCACTTACTTTATGGTCTGCCTTCTTCATGTGGTTTGGGGCCAGGCAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

404

Amino Acids

43.76

Weight (kDa)

8.9

Isoelectric Point (pI)

41.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 12 - 392 1.2e-65 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1075
Acc36I ACCTGC 1 cut(s) 1075
AccBSI CCGCTC 1 cut(s) 860
AccI GTMKAC 2 cut(s) 14, 1055
AciI CCGC 3 cut(s) 260, 545, 858
AclI AACGTT 1 cut(s) 102
AclWI GGATC 2 cut(s) 811, 944
AcsI RAATTY 3 cut(s) 268, 696, 1001
AcyI GRCGYC 1 cut(s) 38
AfaI GTAC 3 cut(s) 189, 448, 577
AfiI CCNNNNNNNGG 2 cut(s) 893, 971
AflIII ACRYGT 1 cut(s) 954
AgsI TTSAA 5 cut(s) 381, 438, 472, 695, 729
AhdI GACNNNNNGTC 1 cut(s) 21
AjnI CCWGG 1 cut(s) 1202
AluBI AGCT 5 cut(s) 54, 86, 335, 601, 851
AluI AGCT 5 cut(s) 54, 86, 335, 601, 851
Alw21I GWGCWC 3 cut(s) 337, 805, 1017
Alw44I GTGCAC 1 cut(s) 1013
AlwI GGATC 2 cut(s) 811, 944
AoxI GGCC 3 cut(s) 238, 1006, 1200
ApaLI GTGCAC 1 cut(s) 1013
ApoI RAATTY 3 cut(s) 268, 696, 1001
ArsI GACNNNNNNTTYG 2 cut(s) 23, 55
AseI ATTAAT 1 cut(s) 618
AspS9I GGNCC 2 cut(s) 405, 1200
AsuHPI GGTGA 3 cut(s) 160, 826, 1081
AvaII GGWCC 1 cut(s) 405
BaeGI GKGCMC 2 cut(s) 997, 1017
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 3 cut(s) 337, 805, 1017
BccI CCATC 3 cut(s) 189, 791, 839
BceAI ACGGC 1 cut(s) 51
BciT130I CCWGG 1 cut(s) 1204
BciVI GTATCC 1 cut(s) 192
BclI TGATCA 1 cut(s) 981
BfaI CTAG 1 cut(s) 1010
BfuAI ACCTGC 1 cut(s) 1075
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 1204
Bme18I GGWCC 1 cut(s) 405
BmeRI GACNNNNNGTC 1 cut(s) 21
BmgT120I GGNCC 2 cut(s) 405, 1200
BmiI GGNNCC 2 cut(s) 477, 1201
BmrFI CCNGG 1 cut(s) 1204
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 242, 380
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 38
BpuEI CTTGAG 1 cut(s) 34
BsaAI YACGTR 1 cut(s) 955
BsaBI GATNNNNATC 2 cut(s) 203, 941
BsaHI GRCGYC 1 cut(s) 38
BsaJI CCNNGG 5 cut(s) 57, 235, 512, 525, 820
BsaXI ACNNNNNCTCC 2 cut(s) 729, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 893, 971
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 1077
Bse8I GATNNNNATC 2 cut(s) 203, 941
BseBI CCWGG 1 cut(s) 1204
BseDI CCNNGG 5 cut(s) 57, 235, 512, 525, 820
BseGI GGATG 5 cut(s) 159, 200, 204, 257, 765
BseJI GATNNNNATC 2 cut(s) 203, 941
BseLI CCNNNNNNNGG 2 cut(s) 893, 971
BseMI GCAATG 1 cut(s) 1077
BseMII CTCAG 3 cut(s) 498, 671, 785
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 3 cut(s) 275, 457, 795
BseSI GKGCMC 2 cut(s) 997, 1017
BseYI CCCAGC 1 cut(s) 298
BshFI GGCC 3 cut(s) 240, 1008, 1202
BsiHKAI GWGCWC 3 cut(s) 337, 805, 1017
BslI CCNNNNNNNGG 2 cut(s) 893, 971
BsnI GGCC 3 cut(s) 240, 1008, 1202
Bsp1286I GDGCHC 4 cut(s) 337, 805, 997, 1017
Bsp143I GATC 5 cut(s) 556, 816, 936, 981, 1086
BspACI CCGC 3 cut(s) 260, 545, 858
BspANI GGCC 3 cut(s) 240, 1008, 1202
BspCNI CTCAG 3 cut(s) 499, 670, 784
BspLI GGNNCC 2 cut(s) 477, 1201
BspMI ACCTGC 1 cut(s) 1075
BspPI GGATC 2 cut(s) 811, 944
BsrBI CCGCTC 1 cut(s) 860
BsrDI GCAATG 1 cut(s) 1077
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 5 cut(s) 57, 235, 512, 525, 820
BssMI GATC 5 cut(s) 556, 816, 936, 981, 1086
BssNAI GTATAC 1 cut(s) 1056
BssNI GRCGYC 1 cut(s) 38
BssT1I CCWWGG 3 cut(s) 57, 525, 820
Bst1107I GTATAC 1 cut(s) 1056
Bst2UI CCWGG 1 cut(s) 1204
Bst4CI ACNGT 4 cut(s) 128, 141, 677, 1159
BstACI GRCGYC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 955
BstDEI CTNAG 4 cut(s) 507, 657, 771, 809
BstENI CCTNNNNNAGG 1 cut(s) 969
BstF5I GGATG 5 cut(s) 159, 200, 204, 257, 765
BstKTI GATC 5 cut(s) 559, 819, 939, 984, 1089
BstMBI GATC 5 cut(s) 556, 816, 936, 981, 1086
BstMWI GCNNNNNNNGC 1 cut(s) 857
BstNI CCWGG 1 cut(s) 1204
BstSCI CCNGG 1 cut(s) 1202
BstSLI GKGCMC 2 cut(s) 997, 1017
BstV2I GAAGAC 1 cut(s) 38
BstZ17I GTATAC 1 cut(s) 1056
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 3 cut(s) 240, 1008, 1202
BtsCI GGATG 5 cut(s) 159, 200, 204, 257, 765
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 3 cut(s) 504, 566, 566
BveI ACCTGC 1 cut(s) 1075
Cfr13I GGNCC 2 cut(s) 405, 1200
CseI GACGC 1 cut(s) 27
Csp6I GTAC 3 cut(s) 188, 447, 576
CviAII CATG 2 cut(s) 626, 1189
CviQI GTAC 3 cut(s) 188, 447, 576
DdeI CTNAG 4 cut(s) 507, 657, 771, 809
DpnI GATC 5 cut(s) 558, 818, 938, 983, 1088
DpnII GATC 5 cut(s) 556, 816, 936, 981, 1086
DriI GACNNNNNGTC 1 cut(s) 21
Eam1105I GACNNNNNGTC 1 cut(s) 21
Ecl136II GAGCTC 1 cut(s) 335
Eco130I CCWWGG 3 cut(s) 57, 525, 820
Eco147I AGGCCT 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 337
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 405
Eco53kI GAGCTC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 335
EcoNI CCTNNNNNAGG 1 cut(s) 969
EcoRII CCWGG 1 cut(s) 1202
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 3 cut(s) 57, 525, 820
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 3 cut(s) 57, 525, 820
FaeI CATG 2 cut(s) 629, 1192
FatI CATG 2 cut(s) 625, 1188
FauI CCCGC 1 cut(s) 865
FauNDI CATATG 1 cut(s) 121
FbaI TGATCA 1 cut(s) 981
FblI GTMKAC 2 cut(s) 14, 1055
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 5 cut(s) 146, 191, 207, 264, 752
FriOI GRGCYC 1 cut(s) 337
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 1 cut(s) 1010
GluI GCNGC 1 cut(s) 261
GsaI CCCAGC 1 cut(s) 302
HaeIII GGCC 3 cut(s) 240, 1008, 1202
HgaI GACGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 38
Hin1II CATG 2 cut(s) 629, 1192
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 5 cut(s) 455, 485, 593, 762, 775
HphI GGTGA 3 cut(s) 160, 826, 1081
Hpy166II GTNNAC 7 cut(s) 15, 157, 566, 782, 1015, 1056, 1140
Hpy188I TCNGA 8 cut(s) 236, 484, 643, 660, 708, 761, 774, 1103
Hpy188III TCNNGA 3 cut(s) 338, 554, 909
Hpy8I GTNNAC 7 cut(s) 15, 157, 566, 782, 1015, 1056, 1140
Hpy99I CGWCG 3 cut(s) 16, 31, 43
HpyAV CCTTC 4 cut(s) 181, 466, 735, 1192
HpyCH4III ACNGT 4 cut(s) 128, 141, 677, 1159
HpyCH4IV ACGT 3 cut(s) 11, 102, 954
HpyCH4V TGCA 7 cut(s) 371, 504, 625, 755, 1015, 1070, 1154
HpyF10VI GCNNNNNNNGC 1 cut(s) 857
HpyF3I CTNAG 4 cut(s) 507, 657, 771, 809
HpySE526I ACGT 3 cut(s) 11, 102, 954
Hsp92I GRCGYC 1 cut(s) 38
Hsp92II CATG 2 cut(s) 629, 1192
Ksp22I TGATCA 1 cut(s) 981
Kzo9I GATC 5 cut(s) 556, 816, 936, 981, 1086
LmnI GCTCC 8 cut(s) 59, 288, 332, 340, 737, 808, 848, 1103
LweI GCATC 2 cut(s) 242, 380
MaeI CTAG 1 cut(s) 1010
MaeII ACGT 3 cut(s) 11, 102, 954
MaeIII GTNAC 3 cut(s) 347, 388, 950
MalI GATC 5 cut(s) 558, 818, 938, 983, 1088
MbiI CCGCTC 1 cut(s) 860
MboI GATC 5 cut(s) 556, 816, 936, 981, 1086
MboII GAAGA 4 cut(s) 43, 426, 513, 1177
MfeI CAATTG 1 cut(s) 1094
MhlI GDGCHC 4 cut(s) 337, 805, 997, 1017
MluCI AATT 7 cut(s) 209, 268, 619, 696, 873, 1001, 1094
MlyI GAGTC 3 cut(s) 449, 587, 771
Mph1103I ATGCAT 1 cut(s) 373
MseI TTAA 5 cut(s) 135, 618, 632, 891, 987
MspR9I CCNGG 1 cut(s) 1204
MunI CAATTG 1 cut(s) 1094
MvaI CCWGG 1 cut(s) 1204
MwoI GCNNNNNNNGC 1 cut(s) 857
NdeI CATATG 1 cut(s) 121
NdeII GATC 5 cut(s) 556, 816, 936, 981, 1086
NlaIII CATG 2 cut(s) 629, 1192
NlaIV GGNNCC 2 cut(s) 477, 1201
NmeAIII GCCGAG 1 cut(s) 493
NmuCI GTSAC 1 cut(s) 347
NsiI ATGCAT 1 cut(s) 373
PaqCI CACCTGC 1 cut(s) 1075
PceI AGGCCT 1 cut(s) 240
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 951
PfeI GAWTC 2 cut(s) 485, 775
PflFI GACNNNGTC 1 cut(s) 37
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 3 cut(s) 449, 587, 770
PpsI GAGTC 3 cut(s) 449, 587, 770
Ppu21I YACGTR 1 cut(s) 955
PshBI ATTAAT 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 337
Psp1406I AACGTT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 1202
PspFI CCCAGC 1 cut(s) 298
PspGI CCWGG 1 cut(s) 1202
PspN4I GGNNCC 2 cut(s) 477, 1201
PspPI GGNCC 2 cut(s) 405, 1200
PsyI GACNNNGTC 1 cut(s) 37
RsaI GTAC 3 cut(s) 189, 448, 577
RsaNI GTAC 3 cut(s) 188, 447, 576
SacI GAGCTC 1 cut(s) 337
SalI GTCGAC 1 cut(s) 13
SaqAI TTAA 5 cut(s) 135, 618, 632, 891, 987
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 5 cut(s) 556, 816, 936, 981, 1086
Sau96I GGNCC 2 cut(s) 405, 1200
SchI GAGTC 3 cut(s) 449, 587, 771
ScrFI CCNGG 1 cut(s) 1204
SduI GDGCHC 4 cut(s) 337, 805, 997, 1017
SfaNI GCATC 2 cut(s) 242, 380
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 7 cut(s) 209, 268, 619, 696, 873, 1001, 1094
SseBI AGGCCT 1 cut(s) 240
SsiI CCGC 3 cut(s) 260, 545, 858
SspMI CTAG 1 cut(s) 1010
SstI GAGCTC 1 cut(s) 337
StuI AGGCCT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 1202
StyI CCWWGG 3 cut(s) 57, 525, 820
TaaI ACNGT 4 cut(s) 128, 141, 677, 1159
TaiI ACGT 3 cut(s) 14, 105, 957
TaqI TCGA 2 cut(s) 14, 29
TasI AATT 7 cut(s) 209, 268, 619, 696, 873, 1001, 1094
TatI WGTACW 2 cut(s) 187, 575
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 2 cut(s) 485, 775
Tru1I TTAA 5 cut(s) 135, 618, 632, 891, 987
Tru9I TTAA 5 cut(s) 135, 618, 632, 891, 987
TscAI CASTG 3 cut(s) 511, 566, 573
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 3 cut(s) 163, 1088, 1177
TspGWI ACGGA 1 cut(s) 15
TspRI CASTG 3 cut(s) 511, 566, 573
Tth111I GACNNNGTC 1 cut(s) 37
VneI GTGCAC 1 cut(s) 1013
VpaK11BI GGWCC 1 cut(s) 405
VspI ATTAAT 1 cut(s) 618
XagI CCTNNNNNAGG 1 cut(s) 969
XapI RAATTY 3 cut(s) 268, 696, 1001
XmiI GTMKAC 2 cut(s) 14, 1055
XspI CTAG 1 cut(s) 1010
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.