Rh7AG327400

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
Physical Location & Seq
Forward (+)
37460742 .. 37473333
12592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG327400.1

Sequence Viewer

Length: 993 bp
ATGAAGATGAAGCTTTTCCAGCTCTTTATCACTGCATCGATTCCAGTCTTGAAAACCCTATTGATTACTGCCCTTGGCTCATATCTTGCAACTGAACGCGTCAATATTCTGGGGGAAGACAGTAGGAAGCACTTAAACAGTGTTGTATTTTTCGTGTACAATCCAGCCCTGGTTGGTTCCAGCCTTGCCCAGACCATAACATATCACAGTATGATTAAGCTGTGGTTCATGCCTGTGAACGTCGTCATGACCTTTATTGTTGGTTCAATATTTGGATGGATACTCATCCTGTTAACAAGAACTCCTCGACGTCTTCGAGGTCTTACTGTGGGTTGCTGTGCTGCTGGAAATTTAGGGAACATGCTCCTTATTATAATCCCAGCTGTTTGTGAAGAAAAAGGGAGTCCATTTGGAGCTCCTGATGTTTGTTATGCTTACGGATTGGCATATGCTTCACTTTCAATGGCGGTACTTCTTTATTTTTCTTTATTTATTTTACCTTTTTTTTTTTTTTGGTTTATCATATTTTTAATTTCAATCGCTTTTGTTCGCCAGATCTCGGTTGTTTATTTGTGGTCCTATGTTTATAGTATTGTGAGGATATCTTCAAAGAGAGACACTCTTGATCAAGACACGATCCAATCTTTGGAGAGATCCTCCATCCCAAACCAACAGATCATGACACCTCCGGGCAAAATAATGAACCGTATAATGAAGGTGGTTAAAAAGCTCAATCTAGAAACGATCTTTTCCCCCTCAATAGTTGCAGCGATCGTTGGCTTTGTTATCGGAGTCATCCCTCCAGTTCGAAAAGTATTCATAGAAGATGGCGCTCCTCTACGGGTGATTAATGACACTGCTTCCTTGTTGGGAGATCGTGATGGGGAATTGGGGATGACCGAGTCACCGAGACCGACCATGATCAAGATTCAAGAAATCAAGAGCCTCAGTTCGGCAATTCCTCACTCCTTAGCGGCTCAGCTAAGTAGCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

330

Amino Acids

36.61

Weight (kDa)

9.51

Isoelectric Point (pI)

39.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 12 - 292 4.6e-42 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AatII GACGTC 1 cut(s) 313
AccB7I CCANNNNNTGG 1 cut(s) 646
AccII CGCG 1 cut(s) 99
AciI CCGC 2 cut(s) 467, 974
AclWI GGATC 2 cut(s) 631, 648
AcsI RAATTY 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 2 cut(s) 158, 471
AfiI CCNNNNNNNGG 3 cut(s) 559, 646, 952
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 6 cut(s) 52, 267, 462, 537, 609, 932
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 8 cut(s) 13, 22, 220, 383, 416, 730, 982, 990
AluI AGCT 8 cut(s) 13, 22, 220, 383, 416, 730, 982, 990
Alw21I GWGCWC 1 cut(s) 418
Alw26I GTCTC 2 cut(s) 609, 904
AlwI GGATC 2 cut(s) 631, 648
ApeKI GCWGC 2 cut(s) 341, 767
ApoI RAATTY 1 cut(s) 349
AseI ATTAAT 1 cut(s) 849
Asp700I GAANNNNTTC 1 cut(s) 14
AspLEI GCGC 1 cut(s) 833
AspS9I GGNCC 1 cut(s) 576
AsuC2I CCSGG 1 cut(s) 690
AsuHPI GGTGA 2 cut(s) 856, 897
AsuII TTCGAA 1 cut(s) 808
AvaII GGWCC 1 cut(s) 576
BanII GRGCYC 1 cut(s) 418
BbsI GAAGAC 2 cut(s) 123, 305
Bbv12I GWGCWC 1 cut(s) 418
BbvI GCAGC 2 cut(s) 328, 779
BccI CCATC 4 cut(s) 270, 668, 821, 875
BciT130I CCWGG 1 cut(s) 170
BciVI GTATCC 1 cut(s) 273
BclI TGATCA 2 cut(s) 625, 921
BcnI CCSGG 1 cut(s) 690
BcoDI GTCTC 2 cut(s) 609, 904
BfaI CTAG 1 cut(s) 737
BfoI RGCGCY 1 cut(s) 834
BfuI GTATCC 1 cut(s) 273
BglII AGATCT 1 cut(s) 555
BisI GCNGC 3 cut(s) 342, 768, 975
BlpI GCTNAGC 1 cut(s) 978
BlsI GCNGC 3 cut(s) 343, 769, 976
Bme1390I CCNGG 2 cut(s) 170, 690
Bme18I GGWCC 1 cut(s) 576
BmgT120I GGNCC 1 cut(s) 576
BmiI GGNNCC 1 cut(s) 178
BmrFI CCNGG 2 cut(s) 170, 690
BmsI GCATC 1 cut(s) 44
BpiI GAAGAC 2 cut(s) 123, 305
BplI GAGNNNNNCTC 4 cut(s) 604, 636, 641, 673
BpmI CTGGAG 1 cut(s) 786
Bpu10I CCTNAGC 1 cut(s) 970
Bpu1102I GCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 808
BpuMI CCSGG 1 cut(s) 690
Bsa29I ATCGAT 1 cut(s) 38
BsaBI GATNNNNATC 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 904
BsaJI CCNNGG 2 cut(s) 73, 168
BsaXI ACNNNNNCTCC 2 cut(s) 286, 316
Bsc4I CCNNNNNNNGG 3 cut(s) 559, 646, 952
Bse1I ACTGG 2 cut(s) 44, 803
Bse8I GATNNNNATC 1 cut(s) 284
BseBI CCWGG 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 38
BseDI CCNNGG 2 cut(s) 73, 168
BseGI GGATG 5 cut(s) 281, 285, 660, 795, 900
BseJI GATNNNNATC 1 cut(s) 284
BseLI CCNNNNNNNGG 3 cut(s) 559, 646, 952
BseMII CTCAG 2 cut(s) 961, 992
BseNI ACTGG 2 cut(s) 44, 803
BseRI GAGGAG 2 cut(s) 294, 825
BseXI GCAGC 2 cut(s) 328, 779
BseYI CCCAGC 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 99
Bsh1285I CGRYCG 1 cut(s) 774
BshVI ATCGAT 1 cut(s) 38
BsiEI CGRYCG 1 cut(s) 774
BsiHKAI GWGCWC 1 cut(s) 418
BsiSI CCGG 1 cut(s) 689
BslI CCNNNNNNNGG 3 cut(s) 559, 646, 952
BsmAI GTCTC 2 cut(s) 609, 904
Bso31I GGTCTC 1 cut(s) 904
Bsp119I TTCGAA 1 cut(s) 808
Bsp1286I GDGCHC 1 cut(s) 418
Bsp1407I TGTACA 1 cut(s) 156
Bsp143I GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
Bsp1720I GCTNAGC 1 cut(s) 978
BspACI CCGC 2 cut(s) 467, 974
BspCNI CTCAG 2 cut(s) 960, 991
BspDI ATCGAT 1 cut(s) 38
BspFNI CGCG 1 cut(s) 99
BspHI TCATGA 2 cut(s) 246, 678
BspLI GGNNCC 1 cut(s) 178
BspPI GGATC 2 cut(s) 631, 648
BspT104I TTCGAA 1 cut(s) 808
BspTNI GGTCTC 1 cut(s) 904
BsrGI TGTACA 1 cut(s) 156
BsrI ACTGG 2 cut(s) 44, 803
BssECI CCNNGG 2 cut(s) 73, 168
BssMI GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 5 cut(s) 122, 140, 209, 328, 707
BstACI GRCGYC 1 cut(s) 310
BstAUI TGTACA 1 cut(s) 156
BstBI TTCGAA 1 cut(s) 808
BstDEI CTNAG 4 cut(s) 947, 970, 978, 983
BstF5I GGATG 5 cut(s) 281, 285, 660, 795, 900
BstFNI CGCG 1 cut(s) 99
BstH2I RGCGCY 1 cut(s) 834
BstHHI GCGC 1 cut(s) 833
BstKTI GATC 9 cut(s) 558, 628, 639, 656, 678, 747, 774, 877, 924
BstMAI GTCTC 2 cut(s) 609, 904
BstMBI GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
BstMCI CGRYCG 1 cut(s) 774
BstMWI GCNNNNNNNGC 1 cut(s) 19
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 364
BstSCI CCNGG 2 cut(s) 168, 688
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 328, 779
BstV2I GAAGAC 2 cut(s) 123, 305
BstX2I RGATCY 2 cut(s) 555, 653
BstYI RGATCY 2 cut(s) 555, 653
Bsu15I ATCGAT 1 cut(s) 38
BsuI GTATCC 1 cut(s) 273
BsuTUI ATCGAT 1 cut(s) 38
BtsCI GGATG 5 cut(s) 281, 285, 660, 795, 900
BtsI GCAGTG 2 cut(s) 30, 855
BtsIMutI CAGTG 3 cut(s) 30, 145, 855
CciI TCATGA 2 cut(s) 246, 678
CfoI GCGC 1 cut(s) 833
Cfr13I GGNCC 1 cut(s) 576
ClaI ATCGAT 1 cut(s) 38
CseI GACGC 1 cut(s) 88
Csp6I GTAC 2 cut(s) 157, 470
CviAII CATG 5 cut(s) 229, 247, 361, 679, 919
CviQI GTAC 2 cut(s) 157, 470
DdeI CTNAG 4 cut(s) 947, 970, 978, 983
DpnI GATC 9 cut(s) 557, 627, 638, 655, 677, 746, 773, 876, 923
DpnII GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
Ecl136II GAGCTC 1 cut(s) 416
Eco130I CCWWGG 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 418
Eco31I GGTCTC 1 cut(s) 904
Eco32I GATATC 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 416
EcoICRI GAGCTC 1 cut(s) 416
EcoRII CCWGG 1 cut(s) 168
EcoRV GATATC 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 418
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 5 cut(s) 232, 250, 364, 682, 922
FatI CATG 5 cut(s) 228, 246, 360, 678, 918
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 2 cut(s) 625, 921
Fnu4HI GCNGC 3 cut(s) 342, 768, 975
FokI GGATG 5 cut(s) 272, 288, 647, 782, 907
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 342, 768, 975
FspBI CTAG 1 cut(s) 737
GlaI GCGC 1 cut(s) 832
GluI GCNGC 3 cut(s) 342, 768, 975
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 786
HaeII RGCGCY 1 cut(s) 834
HapII CCGG 1 cut(s) 689
HgaI GACGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 833
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 5 cut(s) 232, 250, 364, 682, 922
Hin6I GCGC 1 cut(s) 831
HinP1I GCGC 1 cut(s) 831
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 5 cut(s) 40, 403, 792, 902, 928
HpaI GTTAAC 1 cut(s) 294
HpaII CCGG 1 cut(s) 689
HphI GGTGA 2 cut(s) 856, 897
Hpy166II GTNNAC 3 cut(s) 157, 238, 294
Hpy188I TCNGA 1 cut(s) 791
Hpy8I GTNNAC 3 cut(s) 157, 238, 294
Hpy99I CGWCG 2 cut(s) 245, 312
HpyAV CCTTC 1 cut(s) 709
HpyCH4III ACNGT 5 cut(s) 122, 140, 209, 328, 707
HpyCH4IV ACGT 2 cut(s) 240, 310
HpyCH4V TGCA 3 cut(s) 35, 89, 767
HpyF10VI GCNNNNNNNGC 1 cut(s) 19
HpyF3I CTNAG 4 cut(s) 947, 970, 978, 983
HpySE526I ACGT 2 cut(s) 240, 310
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 5 cut(s) 232, 250, 364, 682, 922
HspAI GCGC 1 cut(s) 831
Ksp22I TGATCA 2 cut(s) 625, 921
KspAI GTTAAC 1 cut(s) 294
Kzo9I GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
LmnI GCTCC 4 cut(s) 369, 413, 421, 838
Lsp1109I GCAGC 2 cut(s) 328, 779
LweI GCATC 1 cut(s) 44
MaeI CTAG 1 cut(s) 737
MaeII ACGT 2 cut(s) 240, 310
MaeIII GTNAC 1 cut(s) 903
MalI GATC 9 cut(s) 557, 627, 638, 655, 677, 746, 773, 876, 923
MboI GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
MboII GAAGA 6 cut(s) 16, 128, 305, 404, 597, 836
MflI RGATCY 2 cut(s) 555, 653
MhlI GDGCHC 1 cut(s) 418
MluCI AATT 4 cut(s) 349, 531, 887, 957
MluI ACGCGT 1 cut(s) 97
MlyI GAGTC 3 cut(s) 412, 801, 911
MroXI GAANNNNTTC 1 cut(s) 14
MseI TTAA 6 cut(s) 134, 216, 293, 530, 723, 849
MslI CAYNNNNRTG 1 cut(s) 233
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 1 cut(s) 689
MspR9I CCNGG 2 cut(s) 170, 690
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 19
NciI CCSGG 1 cut(s) 690
NdeI CATATG 1 cut(s) 448
NdeII GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
NlaIII CATG 5 cut(s) 232, 250, 364, 682, 922
NlaIV GGNNCC 1 cut(s) 178
NmuCI GTSAC 1 cut(s) 903
NspI RCATGY 1 cut(s) 364
NspV TTCGAA 1 cut(s) 808
PagI TCATGA 2 cut(s) 246, 678
PcsI WCGNNNNNNNCGW 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 14
PfeI GAWTC 2 cut(s) 40, 928
PflFI GACNNNGTC 1 cut(s) 901
PflMI CCANNNNNTGG 1 cut(s) 646
PkrI GCNGC 3 cut(s) 343, 769, 976
Ple19I CGATCG 1 cut(s) 774
PleI GAGTC 3 cut(s) 411, 800, 910
PpsI GAGTC 3 cut(s) 411, 800, 910
PshBI ATTAAT 1 cut(s) 849
PsiI TTATAA 1 cut(s) 374
Psp124BI GAGCTC 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 168
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 178
PspPI GGNCC 1 cut(s) 576
PsuI RGATCY 2 cut(s) 555, 653
PsyI GACNNNGTC 1 cut(s) 901
PvuI CGATCG 1 cut(s) 774
PvuII CAGCTG 1 cut(s) 383
RsaI GTAC 2 cut(s) 158, 471
RsaNI GTAC 2 cut(s) 157, 470
RseI CAYNNNNRTG 1 cut(s) 233
SacI GAGCTC 1 cut(s) 418
SaqAI TTAA 6 cut(s) 134, 216, 293, 530, 723, 849
SatI GCNGC 3 cut(s) 342, 768, 975
Sau3AI GATC 9 cut(s) 555, 625, 636, 653, 675, 744, 771, 874, 921
Sau96I GGNCC 1 cut(s) 576
SchI GAGTC 3 cut(s) 412, 801, 911
ScrFI CCNGG 2 cut(s) 170, 690
SduI GDGCHC 1 cut(s) 418
SfaNI GCATC 1 cut(s) 44
SfuI TTCGAA 1 cut(s) 808
SinI GGWCC 1 cut(s) 576
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 4 cut(s) 349, 531, 887, 957
SsiI CCGC 2 cut(s) 467, 974
SspI AATATT 2 cut(s) 106, 270
SspMI CTAG 1 cut(s) 737
SstI GAGCTC 1 cut(s) 418
StyD4I CCNGG 2 cut(s) 168, 688
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 5 cut(s) 122, 140, 209, 328, 707
TaiI ACGT 2 cut(s) 243, 313
TaqI TCGA 4 cut(s) 38, 307, 316, 808
TaqII GACCGA 2 cut(s) 914, 928
TasI AATT 4 cut(s) 349, 531, 887, 957
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 977
TfiI GAWTC 2 cut(s) 40, 928
Tru1I TTAA 6 cut(s) 134, 216, 293, 530, 723, 849
Tru9I TTAA 6 cut(s) 134, 216, 293, 530, 723, 849
TscAI CASTG 3 cut(s) 37, 145, 862
TseFI GTSAC 1 cut(s) 903
TseI GCWGC 2 cut(s) 341, 767
Tsp45I GTSAC 1 cut(s) 903
TspDTI ATGAA 6 cut(s) 17, 23, 217, 716, 728, 808
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 3 cut(s) 37, 145, 862
Tth111I GACNNNGTC 1 cut(s) 901
Van91I CCANNNNNTGG 1 cut(s) 646
VpaK11BI GGWCC 1 cut(s) 576
VspI ATTAAT 1 cut(s) 849
XapI RAATTY 1 cut(s) 349
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 14
XspI CTAG 1 cut(s) 737
ZraI GACGTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.