RchiOBHm_Chr7g0219341

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000423
Physical Location & Seq
Forward (+)
37731128 .. 37733366
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19632

Sequence Viewer

Length: 963 bp
ATGAAGCTTTTCCAGCTCTTTATCACTGCATCGATTCCAGTCTTGAAAACCCTATTGATTACTGCCCTTGGCTCATATCTTGCAACTGAACGCGTCAATATTCTGGGGGAAGACAGTAGGAAGCACTTAAACAGTGTTGTATTTTTCGTGTACAATCCAGCCCTGGTTGGTTCCAGCCTTGCCCAGACCATAACATATCACAGTATGATTAAGCTGTGGTTCATGCCTGTGAACGTCGGCATGACCTTTATTGTTGGTTCAATATTTGGATGGATACTCATCCTGTTAACAAGAACTCCTCGACGTCTTCGAGGTCTTACTGTGGGTTGCTGTGCTGCTGGAAATTTAGGGAACATGCTCCTTATTATAATCCCAGCTGTTTGTGAAGAAAAAGGGAGTCCATTTGGAGCTCCTGATGTTTGTTATGCTTACGGATTGGCATATGCTTCACTTTCAATGGCGATCATGACACCTCCGGGCAAAATAATGAACCGTATAATGAAGGTGGTCAAAAAGCTCAATCTAGAAACGATCTTTTCCCCCTCAATAGTTGCAGCGATCGTTGGCTTTGTTATCGGAGTCATCCCTCCAGTTCGAAAAGTATTCATAGAAGATGGCGCTCCTCTACGGGTGATTAATGACACTGCTTCCTTGTTGGGCATAATGAGAGTCTTGATGGTTCATTATCTGGTGCTGATTGAAATTGTGTTCATTTATTTGTTACTTTTCAGTGGAGATATCCCGGCTGTCACTCTTATAATAGGAGGAAACCTCCTTAAAGGCCTGAGAGGGTCTGGGATACAGACTTCTCTCGTTATCGGCATCATCATTGTTCGTTATGTTGCCCTGCCTCTTGCAGGCATATTGATCGTTAAAGGGGCAATGAAATTTGGCTTAGTACACTCTGATCCATTGTATCTGTTTGTGTTCTTCTCCTTCAATTTGCACTCCCACCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

320

Amino Acids

34.85

Weight (kDa)

9.69

Isoelectric Point (pI)

31.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 155 3.6e-33 Membrane transport protein
Mem_trans PF03547 165 - 222 7.7e-06 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 368, 758
AatII GACGTC 1 cut(s) 307
AccII CGCG 1 cut(s) 93
AclWI GGATC 1 cut(s) 902
AcsI RAATTY 2 cut(s) 343, 887
AcyI GRCGYC 1 cut(s) 304
AfaI GTAC 2 cut(s) 152, 900
AfiI CCNNNNNNNGG 1 cut(s) 857
AflIII ACRYGT 1 cut(s) 91
AgsI TTSAA 5 cut(s) 46, 261, 456, 701, 940
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 6 cut(s) 7, 16, 214, 377, 410, 517
AluI AGCT 6 cut(s) 7, 16, 214, 377, 410, 517
Alw21I GWGCWC 1 cut(s) 412
AlwI GGATC 1 cut(s) 902
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 2 cut(s) 335, 554
ApoI RAATTY 2 cut(s) 343, 887
AseI ATTAAT 1 cut(s) 636
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 620
AsuC2I CCSGG 2 cut(s) 477, 743
AsuHPI GGTGA 1 cut(s) 643
AsuII TTCGAA 1 cut(s) 595
BanII GRGCYC 1 cut(s) 412
BbsI GAAGAC 2 cut(s) 117, 299
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 2 cut(s) 322, 566
BccI CCATC 3 cut(s) 264, 608, 670
BcgI CGANNNNNNTGC 2 cut(s) 850, 884
BciT130I CCWGG 1 cut(s) 164
BciVI GTATCC 2 cut(s) 267, 792
BcnI CCSGG 2 cut(s) 477, 743
BfaI CTAG 1 cut(s) 524
BfmI CTRYAG 1 cut(s) 956
BfoI RGCGCY 1 cut(s) 621
BfuI GTATCC 2 cut(s) 267, 792
BisI GCNGC 2 cut(s) 336, 555
BlsI GCNGC 2 cut(s) 337, 556
Bme1390I CCNGG 3 cut(s) 164, 477, 743
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 3 cut(s) 164, 477, 743
BmsI GCATC 2 cut(s) 38, 831
BpiI GAAGAC 2 cut(s) 117, 299
BplI GAGNNNNNCTC 2 cut(s) 756, 788
BpmI CTGGAG 1 cut(s) 573
Bpu14I TTCGAA 1 cut(s) 595
BpuMI CCSGG 2 cut(s) 477, 743
Bsa29I ATCGAT 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 304
BsaJI CCNNGG 2 cut(s) 67, 162
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 1 cut(s) 857
Bse1I ACTGG 2 cut(s) 38, 590
Bse3DI GCAATG 1 cut(s) 888
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 67, 162
BseGI GGATG 3 cut(s) 275, 279, 582
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 1 cut(s) 857
BseMI GCAATG 1 cut(s) 888
BseMII CTCAG 1 cut(s) 776
BseNI ACTGG 2 cut(s) 38, 590
BseRI GAGGAG 2 cut(s) 288, 612
BseXI GCAGC 2 cut(s) 322, 566
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 93
Bsh1285I CGRYCG 1 cut(s) 561
BshFI GGCC 1 cut(s) 783
BshVI ATCGAT 1 cut(s) 32
BsiEI CGRYCG 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 2 cut(s) 476, 743
BslI CCNNNNNNNGG 1 cut(s) 857
BsnI GGCC 1 cut(s) 783
Bsp119I TTCGAA 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 412
Bsp1407I TGTACA 1 cut(s) 150
Bsp143I GATC 5 cut(s) 462, 531, 558, 867, 907
BspANI GGCC 1 cut(s) 783
BspCNI CTCAG 1 cut(s) 777
BspDI ATCGAT 1 cut(s) 32
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 465
BspLI GGNNCC 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 960
BspPI GGATC 1 cut(s) 902
BspT104I TTCGAA 1 cut(s) 595
BsrDI GCAATG 1 cut(s) 888
BsrGI TGTACA 1 cut(s) 150
BsrI ACTGG 2 cut(s) 38, 590
BssECI CCNNGG 2 cut(s) 67, 162
BssMI GATC 5 cut(s) 462, 531, 558, 867, 907
BssNI GRCGYC 1 cut(s) 304
BssT1I CCWWGG 1 cut(s) 67
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 5 cut(s) 116, 134, 203, 322, 494
BstACI GRCGYC 1 cut(s) 304
BstAUI TGTACA 1 cut(s) 150
BstBI TTCGAA 1 cut(s) 595
BstC8I GCNNGC 1 cut(s) 859
BstDEI CTNAG 2 cut(s) 785, 895
BstENI CCTNNNNNAGG 1 cut(s) 855
BstF5I GGATG 3 cut(s) 275, 279, 582
BstFNI CGCG 1 cut(s) 93
BstH2I RGCGCY 1 cut(s) 621
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 5 cut(s) 465, 534, 561, 870, 910
BstMBI GATC 5 cut(s) 462, 531, 558, 867, 907
BstMCI CGRYCG 1 cut(s) 561
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 358
BstSCI CCNGG 3 cut(s) 162, 475, 741
BstSFI CTRYAG 1 cut(s) 956
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 322, 566
BstV2I GAAGAC 2 cut(s) 117, 299
Bsu15I ATCGAT 1 cut(s) 32
BsuI GTATCC 2 cut(s) 267, 792
BsuRI GGCC 1 cut(s) 783
BsuTUI ATCGAT 1 cut(s) 32
BtsCI GGATG 3 cut(s) 275, 279, 582
BtsI GCAGTG 2 cut(s) 24, 642
BtsIMutI CAGTG 4 cut(s) 24, 139, 642, 736
Cac8I GCNNGC 1 cut(s) 859
CciI TCATGA 1 cut(s) 465
CfoI GCGC 1 cut(s) 620
ClaI ATCGAT 1 cut(s) 32
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 151, 899
CviAII CATG 4 cut(s) 223, 241, 355, 466
CviQI GTAC 2 cut(s) 151, 899
DdeI CTNAG 2 cut(s) 785, 895
DpnI GATC 5 cut(s) 464, 533, 560, 869, 909
DpnII GATC 5 cut(s) 462, 531, 558, 867, 907
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 67
Eco147I AGGCCT 1 cut(s) 783
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 739
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 855
EcoRII CCWGG 1 cut(s) 162
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 1 cut(s) 67
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 67
FaeI CATG 4 cut(s) 226, 244, 358, 469
FatI CATG 4 cut(s) 222, 240, 354, 465
FauNDI CATATG 1 cut(s) 442
Fnu4HI GCNGC 2 cut(s) 336, 555
FokI GGATG 3 cut(s) 266, 282, 569
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 336, 555
FspBI CTAG 1 cut(s) 524
GlaI GCGC 1 cut(s) 619
GluI GCNGC 2 cut(s) 336, 555
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 621
HaeIII GGCC 1 cut(s) 783
HapII CCGG 2 cut(s) 476, 743
HgaI GACGC 1 cut(s) 82
HhaI GCGC 1 cut(s) 620
Hin1I GRCGYC 1 cut(s) 304
Hin1II CATG 4 cut(s) 226, 244, 358, 469
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 4 cut(s) 34, 397, 579, 669
HpaI GTTAAC 1 cut(s) 288
HpaII CCGG 2 cut(s) 476, 743
HphI GGTGA 1 cut(s) 643
Hpy166II GTNNAC 4 cut(s) 151, 232, 288, 901
Hpy188I TCNGA 2 cut(s) 578, 907
Hpy188III TCNNGA 5 cut(s) 43, 413, 466, 524, 673
Hpy8I GTNNAC 4 cut(s) 151, 232, 288, 901
Hpy99I CGWCG 2 cut(s) 239, 306
HpyAV CCTTC 2 cut(s) 496, 946
HpyCH4III ACNGT 5 cut(s) 116, 134, 203, 322, 494
HpyCH4IV ACGT 2 cut(s) 234, 304
HpyCH4V TGCA 6 cut(s) 29, 83, 554, 857, 946, 958
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpyF3I CTNAG 2 cut(s) 785, 895
HpySE526I ACGT 2 cut(s) 234, 304
Hsp92I GRCGYC 1 cut(s) 304
Hsp92II CATG 4 cut(s) 226, 244, 358, 469
HspAI GCGC 1 cut(s) 618
KspAI GTTAAC 1 cut(s) 288
Kzo9I GATC 5 cut(s) 462, 531, 558, 867, 907
LmnI GCTCC 4 cut(s) 363, 407, 415, 625
Lsp1109I GCAGC 2 cut(s) 322, 566
LweI GCATC 2 cut(s) 38, 831
MaeI CTAG 1 cut(s) 524
MaeII ACGT 2 cut(s) 234, 304
MaeIII GTNAC 2 cut(s) 720, 748
MalI GATC 5 cut(s) 464, 533, 560, 869, 909
MboI GATC 5 cut(s) 462, 531, 558, 867, 907
MboII GAAGA 5 cut(s) 122, 299, 398, 623, 922
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 4 cut(s) 343, 702, 887, 940
MluI ACGCGT 1 cut(s) 91
MlyI GAGTC 3 cut(s) 406, 588, 678
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 6 cut(s) 128, 210, 287, 636, 777, 873
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 377
MspI CCGG 2 cut(s) 476, 743
MspR9I CCNGG 3 cut(s) 164, 477, 743
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 1 cut(s) 13
NciI CCSGG 2 cut(s) 477, 743
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 462, 531, 558, 867, 907
NlaIII CATG 4 cut(s) 226, 244, 358, 469
NlaIV GGNNCC 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 748
NspI RCATGY 1 cut(s) 358
NspV TTCGAA 1 cut(s) 595
PagI TCATGA 1 cut(s) 465
PceI AGGCCT 1 cut(s) 783
PcsI WCGNNNNNNNCGW 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 337, 556
Ple19I CGATCG 1 cut(s) 561
PleI GAGTC 3 cut(s) 405, 587, 677
PpsI GAGTC 3 cut(s) 405, 587, 677
PshBI ATTAAT 1 cut(s) 636
PsiI TTATAA 2 cut(s) 368, 758
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 162
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 172
PstI CTGCAG 1 cut(s) 960
PvuI CGATCG 1 cut(s) 561
PvuII CAGCTG 1 cut(s) 377
RsaI GTAC 2 cut(s) 152, 900
RsaNI GTAC 2 cut(s) 151, 899
RseI CAYNNNNRTG 1 cut(s) 227
SacI GAGCTC 1 cut(s) 412
SaqAI TTAA 6 cut(s) 128, 210, 287, 636, 777, 873
SatI GCNGC 2 cut(s) 336, 555
Sau3AI GATC 5 cut(s) 462, 531, 558, 867, 907
SchI GAGTC 3 cut(s) 406, 588, 678
ScrFI CCNGG 3 cut(s) 164, 477, 743
SduI GDGCHC 1 cut(s) 412
SfaNI GCATC 2 cut(s) 38, 831
SfcI CTRYAG 1 cut(s) 956
SfuI TTCGAA 1 cut(s) 595
SmiMI CAYNNNNRTG 1 cut(s) 227
Sse9I AATT 4 cut(s) 343, 702, 887, 940
SseBI AGGCCT 1 cut(s) 783
SspI AATATT 2 cut(s) 100, 264
SspMI CTAG 1 cut(s) 524
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 1 cut(s) 783
StyD4I CCNGG 3 cut(s) 162, 475, 741
StyI CCWWGG 1 cut(s) 67
TaaI ACNGT 5 cut(s) 116, 134, 203, 322, 494
TaiI ACGT 2 cut(s) 237, 307
TaqI TCGA 4 cut(s) 32, 301, 310, 595
TasI AATT 4 cut(s) 343, 702, 887, 940
TatI WGTACW 2 cut(s) 150, 898
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 6 cut(s) 128, 210, 287, 636, 777, 873
Tru9I TTAA 6 cut(s) 128, 210, 287, 636, 777, 873
TscAI CASTG 4 cut(s) 31, 139, 649, 736
TseFI GTSAC 1 cut(s) 748
TseI GCWGC 2 cut(s) 335, 554
Tsp45I GTSAC 1 cut(s) 748
TspDTI ATGAA 8 cut(s) 17, 211, 503, 515, 595, 671, 700, 899
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 4 cut(s) 31, 139, 649, 736
VspI ATTAAT 1 cut(s) 636
XagI CCTNNNNNAGG 1 cut(s) 855
XapI RAATTY 2 cut(s) 343, 887
XbaI TCTAGA 1 cut(s) 523
XceI RCATGY 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 1 cut(s) 524
ZraI GACGTC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.