FvH4_5g26370

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000423
Physical Location & Seq
Forward (+)
17868306 .. 17871706
3401 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g26370.t2

Sequence Viewer

Length: 1242 bp
ATGGCGGTTTTGCAGCTCTTCATCACCGCCTCGATTCCGGTCTTGAAGGTGCTCTTCATCACTGCACTTGGATCCTATCTTGCACTTGAGCGAATTAATATTCTTGGGGAAGAAACCAGGAAGAACTTGAATACAGTTGTATTTTATGTATTCAGTCCTGCCTTGGTGGGAACTAACCTTGCCCAGACTATTACATATGACAGTATGATTAAACTGTGGTTTATGCCTGTGAACATCTTAGTCACATTTCTTGTTGGTTCTCTACTTGGATGGATACTCATCCAATTAGCAAGACCACCTCCACATCTCAGAGGCCTCATTTTGGGTTGCTGTGCTGCTGGAAATTTGGGGAACTTGCTCCTCATTATAATCCCAGCAGTTTGTAAAGAGAAGGGAAGCCCATTTGGAGCTCCTGATGTCTGTCACACTTATGGAATGGCTTATGCATCACTTTCAATGGCAACTGGAGCCATTTATATATGGTCCTATGTGTATAACATTGTGAGGATATCTTCAAAGAGGACTACCCAAGACTTACCCCAGTCTTTGGAGGAACCCTCTGAATCAAACCAAGCGAGTTTCACTGAGCCTCTGCTTTCTTCCAAGGAATATGGGATACTGGAGGACAATGCCGATCAGTATGCCCTGCCCTGCACTATATCTCAACAAGACTCTAAGATAGAGCCTCCAAGTAAATCCAAAAACTGCATAGTGAGAATGTGTCAAATGCTTAATCTGAAAACGATATTTGCCCCTTCAACTATTGGAGCAATTGTCGGATTTGCAATTGGAGTCATCCCTCAGATTCGTAATCTAATGATAGGAGATGGTGCTCCTCTACGGGTGATCCAAGACACTACTAACTTGTTGGGAGATGGAGCTATCCCCGCTCTTACTTTGATAATTGGAGGAAACCTCCTTAAAGGTTTGAGAGGGTCAGGGATACAGAAATCTATTGTTGTTGGGATCATCTTTGTTCGTTATGTGTTCCTGCCTCTTACAGGCATATTGATCATTAAAGGGGCGCTAAAATTTGGCTTAGTGCACTCCGATCCATTGTATCTATTTGTTCTTCTGATTCAGTATACACTTCCACCTGCAATGAACATAGGAACCATCACCCAATTGTTTGGAGCAGGAGAAAGCGAATGTTCAGTAATCCTGCTGTGGACTTATGTCTTTGCATCAGTGTCACTTACTTTATGGTCTGCCTTCTTCATGTGGTTTGTGGCCAGGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

414

Amino Acids

44.96

Weight (kDa)

8.54

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 292 5.5e-55 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 368
AarI CACCTGC 1 cut(s) 1105
Acc36I ACCTGC 1 cut(s) 1105
AccB7I CCANNNNNTGG 1 cut(s) 547
AccBSI CCGCTC 1 cut(s) 890
AccI GTMKAC 1 cut(s) 1085
AciI CCGC 3 cut(s) 5, 27, 888
AclWI GGATC 5 cut(s) 66, 79, 841, 974, 1046
AcoI YGGCCR 1 cut(s) 1230
AcsI RAATTY 2 cut(s) 343, 1031
AfiI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
AgsI TTSAA 5 cut(s) 46, 130, 456, 516, 759
AjnI CCWGG 2 cut(s) 116, 1232
AluBI AGCT 3 cut(s) 16, 410, 881
AluI AGCT 3 cut(s) 16, 410, 881
Alw21I GWGCWC 4 cut(s) 54, 412, 835, 1047
Alw44I GTGCAC 1 cut(s) 1043
AlwI GGATC 5 cut(s) 66, 79, 841, 974, 1046
AoxI GGCC 2 cut(s) 313, 1230
ApaLI GTGCAC 1 cut(s) 1043
ApeKI GCWGC 2 cut(s) 13, 335
ApoI RAATTY 2 cut(s) 343, 1031
AseI ATTAAT 1 cut(s) 96
AspLEI GCGC 1 cut(s) 1027
AspS9I GGNCC 1 cut(s) 483
AsuHPI GGTGA 3 cut(s) 16, 856, 1111
AvaII GGWCC 1 cut(s) 483
BaeGI GKGCMC 1 cut(s) 1047
BalI TGGCCA 1 cut(s) 1232
BamHI GGATCC 1 cut(s) 71
BanII GRGCYC 1 cut(s) 412
Bbv12I GWGCWC 4 cut(s) 54, 412, 835, 1047
BbvI GCAGC 2 cut(s) 25, 322
BccI CCATC 4 cut(s) 264, 821, 869, 1124
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BciT130I CCWGG 2 cut(s) 118, 1234
BciVI GTATCC 3 cut(s) 267, 609, 936
BclI TGATCA 1 cut(s) 1011
BfmI CTRYAG 1 cut(s) 1238
BfoI RGCGCY 1 cut(s) 1028
BfuAI ACCTGC 1 cut(s) 1105
BfuI GTATCC 3 cut(s) 267, 609, 936
BisI GCNGC 2 cut(s) 14, 336
BlsI GCNGC 2 cut(s) 15, 337
Bme1390I CCNGG 2 cut(s) 118, 1234
Bme18I GGWCC 1 cut(s) 483
BmgT120I GGNCC 1 cut(s) 483
BmiI GGNNCC 4 cut(s) 73, 469, 555, 1114
BmrFI CCNGG 2 cut(s) 118, 1234
BmrI ACTGGG 1 cut(s) 535
BmsI GCATC 2 cut(s) 455, 1193
BmuI ACTGGG 1 cut(s) 535
BoxI GACNNNNGTC 1 cut(s) 1175
BplI GAGNNNNNCTC 4 cut(s) 542, 574, 900, 932
BpmI CTGGAG 2 cut(s) 486, 641
BpuEI CTTGAG 1 cut(s) 107
BsaBI GATNNNNATC 1 cut(s) 278
BsaJI CCNNGG 2 cut(s) 162, 603
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 759, 789
Bsc4I CCNNNNNNNGG 3 cut(s) 322, 547, 1001
Bse1I ACTGG 3 cut(s) 469, 541, 624
Bse3DI GCAATG 1 cut(s) 1107
Bse8I GATNNNNATC 1 cut(s) 278
BseBI CCWGG 2 cut(s) 118, 1234
BseDI CCNNGG 2 cut(s) 162, 603
BseGI GGATG 3 cut(s) 275, 279, 795
BseJI GATNNNNATC 1 cut(s) 278
BseLI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
BseMI GCAATG 1 cut(s) 1107
BseMII CTCAG 3 cut(s) 322, 576, 815
BseNI ACTGG 3 cut(s) 469, 541, 624
BseRI GAGGAG 2 cut(s) 350, 825
BseSI GKGCMC 1 cut(s) 1047
BseXI GCAGC 2 cut(s) 25, 322
BseYI CCCAGC 1 cut(s) 373
BsgI GTGCAG 2 cut(s) 48, 637
BshFI GGCC 2 cut(s) 315, 1232
BsiHKAI GWGCWC 4 cut(s) 54, 412, 835, 1047
BsiSI CCGG 1 cut(s) 38
BslI CCNNNNNNNGG 3 cut(s) 322, 547, 1001
BsnI GGCC 2 cut(s) 315, 1232
Bsp1286I GDGCHC 4 cut(s) 54, 412, 835, 1047
Bsp143I GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
BspACI CCGC 3 cut(s) 5, 27, 888
BspANI GGCC 2 cut(s) 315, 1232
BspCNI CTCAG 3 cut(s) 321, 577, 814
BspLI GGNNCC 4 cut(s) 73, 469, 555, 1114
BspMI ACCTGC 1 cut(s) 1105
BspPI GGATC 5 cut(s) 66, 79, 841, 974, 1046
BspQI GCTCTTC 2 cut(s) 23, 59
BsrBI CCGCTC 1 cut(s) 890
BsrDI GCAATG 1 cut(s) 1107
BsrI ACTGG 3 cut(s) 469, 541, 624
BssECI CCNNGG 2 cut(s) 162, 603
BssMI GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
BssNAI GTATAC 1 cut(s) 1086
BssT1I CCWWGG 2 cut(s) 162, 603
Bst1107I GTATAC 1 cut(s) 1086
Bst2UI CCWGG 2 cut(s) 118, 1234
Bst4CI ACNGT 3 cut(s) 136, 203, 216
Bst6I CTCTTC 2 cut(s) 23, 59
BstDEI CTNAG 6 cut(s) 238, 308, 585, 675, 801, 1039
BstENI CCTNNNNNAGG 1 cut(s) 999
BstF5I GGATG 3 cut(s) 275, 279, 795
BstH2I RGCGCY 1 cut(s) 1028
BstHHI GCGC 1 cut(s) 1027
BstKTI GATC 6 cut(s) 74, 637, 849, 969, 1014, 1054
BstMBI GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
BstMWI GCNNNNNNNGC 2 cut(s) 467, 887
BstNI CCWGG 2 cut(s) 118, 1234
BstPAI GACNNNNGTC 1 cut(s) 1175
BstSCI CCNGG 2 cut(s) 116, 1232
BstSFI CTRYAG 1 cut(s) 1238
BstSLI GKGCMC 1 cut(s) 1047
BstV1I GCAGC 2 cut(s) 25, 322
BstX2I RGATCY 1 cut(s) 71
BstXI CCANNNNNNTGG 1 cut(s) 1130
BstYI RGATCY 1 cut(s) 71
BstZ17I GTATAC 1 cut(s) 1086
BsuI GTATCC 3 cut(s) 267, 609, 936
BsuRI GGCC 2 cut(s) 315, 1232
BtsCI GGATG 3 cut(s) 275, 279, 795
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 582, 1194
BveI ACCTGC 1 cut(s) 1105
CfoI GCGC 1 cut(s) 1027
Cfr13I GGNCC 1 cut(s) 483
CviAII CATG 1 cut(s) 1219
DdeI CTNAG 6 cut(s) 238, 308, 585, 675, 801, 1039
DpnI GATC 6 cut(s) 73, 636, 848, 968, 1013, 1053
DpnII GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
EaeI YGGCCR 1 cut(s) 1230
Eam1104I CTCTTC 2 cut(s) 23, 59
EarI CTCTTC 2 cut(s) 23, 59
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 2 cut(s) 162, 603
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 1 cut(s) 412
Eco32I GATATC 1 cut(s) 510
Eco47I GGWCC 1 cut(s) 483
Eco53kI GAGCTC 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 999
EcoRII CCWGG 2 cut(s) 116, 1232
EcoRV GATATC 1 cut(s) 510
EcoT14I CCWWGG 2 cut(s) 162, 603
EcoT22I ATGCAT 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 412
ErhI CCWWGG 2 cut(s) 162, 603
FaeI CATG 1 cut(s) 1222
FalI AAGNNNNNCTT 2 cut(s) 38, 70
FatI CATG 1 cut(s) 1218
FauI CCCGC 1 cut(s) 895
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 1011
FblI GTMKAC 1 cut(s) 1085
Fnu4HI GCNGC 2 cut(s) 14, 336
FokI GGATG 3 cut(s) 266, 282, 782
FriOI GRGCYC 1 cut(s) 412
Fsp4HI GCNGC 2 cut(s) 14, 336
GlaI GCGC 1 cut(s) 1026
GluI GCNGC 2 cut(s) 14, 336
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 2 cut(s) 486, 641
HaeII RGCGCY 1 cut(s) 1028
HaeIII GGCC 2 cut(s) 315, 1232
HapII CCGG 1 cut(s) 38
HhaI GCGC 1 cut(s) 1027
Hin1II CATG 1 cut(s) 1222
Hin6I GCGC 1 cut(s) 1025
HinP1I GCGC 1 cut(s) 1025
HinfI GANTC 6 cut(s) 34, 563, 671, 792, 805, 1078
HpaII CCGG 1 cut(s) 38
HphI GGTGA 3 cut(s) 16, 856, 1111
Hpy166II GTNNAC 4 cut(s) 232, 1045, 1086, 1170
Hpy188I TCNGA 7 cut(s) 311, 562, 738, 779, 804, 1051, 1077
Hpy188III TCNNGA 2 cut(s) 43, 413
Hpy8I GTNNAC 4 cut(s) 232, 1045, 1086, 1170
HpyAV CCTTC 4 cut(s) 40, 385, 765, 1222
HpyCH4III ACNGT 3 cut(s) 136, 203, 216
HpyF10VI GCNNNNNNNGC 2 cut(s) 467, 887
HpyF3I CTNAG 6 cut(s) 238, 308, 585, 675, 801, 1039
Hsp92II CATG 1 cut(s) 1222
HspAI GCGC 1 cut(s) 1025
Ksp22I TGATCA 1 cut(s) 1011
Kzo9I GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
LguI GCTCTTC 2 cut(s) 23, 59
LmnI GCTCC 8 cut(s) 363, 407, 415, 467, 767, 838, 878, 1133
Lsp1109I GCAGC 2 cut(s) 25, 322
LweI GCATC 2 cut(s) 455, 1193
MaeIII GTNAC 3 cut(s) 241, 422, 1191
MalI GATC 6 cut(s) 73, 636, 848, 968, 1013, 1053
MbiI CCGCTC 1 cut(s) 890
MboI GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
MboII GAAGA 8 cut(s) 10, 46, 122, 133, 504, 591, 1064, 1207
MfeI CAATTG 3 cut(s) 771, 786, 1124
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 4 cut(s) 54, 412, 835, 1047
MlsI TGGCCA 1 cut(s) 1232
MluCI AATT 8 cut(s) 93, 284, 343, 771, 786, 903, 1031, 1124
MluNI TGGCCA 1 cut(s) 1232
MlyI GAGTC 2 cut(s) 665, 801
MmeI TCCRAC 1 cut(s) 757
Mox20I TGGCCA 1 cut(s) 1232
Mph1103I ATGCAT 1 cut(s) 448
MscI TGGCCA 1 cut(s) 1232
MseI TTAA 5 cut(s) 96, 210, 732, 921, 1017
MslI CAYNNNNRTG 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 1232
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 2 cut(s) 118, 1234
MunI CAATTG 3 cut(s) 771, 786, 1124
MvaI CCWGG 2 cut(s) 118, 1234
MwoI GCNNNNNNNGC 2 cut(s) 467, 887
NdeI CATATG 1 cut(s) 196
NdeII GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
NlaIII CATG 1 cut(s) 1222
NlaIV GGNNCC 4 cut(s) 73, 469, 555, 1114
NmuCI GTSAC 3 cut(s) 241, 422, 1191
NsiI ATGCAT 1 cut(s) 448
PaqCI CACCTGC 1 cut(s) 1105
PceI AGGCCT 1 cut(s) 315
PciSI GCTCTTC 2 cut(s) 23, 59
PfeI GAWTC 4 cut(s) 34, 563, 805, 1078
PflMI CCANNNNNTGG 1 cut(s) 547
PkrI GCNGC 2 cut(s) 15, 337
PleI GAGTC 2 cut(s) 665, 800
PpsI GAGTC 2 cut(s) 665, 800
PshAI GACNNNNGTC 1 cut(s) 1175
PshBI ATTAAT 1 cut(s) 96
PsiI TTATAA 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 2 cut(s) 116, 1232
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 2 cut(s) 116, 1232
PspN4I GGNNCC 4 cut(s) 73, 469, 555, 1114
PspPI GGNCC 1 cut(s) 483
PsuI RGATCY 1 cut(s) 71
RseI CAYNNNNRTG 1 cut(s) 429
SacI GAGCTC 1 cut(s) 412
SapI GCTCTTC 2 cut(s) 23, 59
SaqAI TTAA 5 cut(s) 96, 210, 732, 921, 1017
SatI GCNGC 2 cut(s) 14, 336
Sau3AI GATC 6 cut(s) 71, 634, 846, 966, 1011, 1051
Sau96I GGNCC 1 cut(s) 483
SchI GAGTC 2 cut(s) 665, 801
ScrFI CCNGG 2 cut(s) 118, 1234
SduI GDGCHC 4 cut(s) 54, 412, 835, 1047
SetI ASST 9 cut(s) 18, 51, 180, 301, 412, 883, 918, 928, 1099
SfaNI GCATC 2 cut(s) 455, 1193
SfcI CTRYAG 1 cut(s) 1238
SinI GGWCC 1 cut(s) 483
SmiMI CAYNNNNRTG 1 cut(s) 429
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 8 cut(s) 93, 284, 343, 771, 786, 903, 1031, 1124
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 3 cut(s) 5, 27, 888
SspI AATATT 1 cut(s) 100
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 116, 1232
StyI CCWWGG 2 cut(s) 162, 603
TaaI ACNGT 3 cut(s) 136, 203, 216
TaqI TCGA 1 cut(s) 32
TasI AATT 8 cut(s) 93, 284, 343, 771, 786, 903, 1031, 1124
TfiI GAWTC 4 cut(s) 34, 563, 805, 1078
Tru1I TTAA 5 cut(s) 96, 210, 732, 921, 1017
Tru9I TTAA 5 cut(s) 96, 210, 732, 921, 1017
TscAI CASTG 3 cut(s) 67, 589, 1194
TseFI GTSAC 3 cut(s) 241, 422, 1191
TseI GCWGC 2 cut(s) 13, 335
Tsp45I GTSAC 3 cut(s) 241, 422, 1191
TspDTI ATGAA 4 cut(s) 10, 46, 1118, 1207
TspRI CASTG 3 cut(s) 67, 589, 1194
Van91I CCANNNNNTGG 1 cut(s) 547
VneI GTGCAC 1 cut(s) 1043
VpaK11BI GGWCC 1 cut(s) 483
VspI ATTAAT 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 999
XapI RAATTY 2 cut(s) 343, 1031
XmiI GTMKAC 1 cut(s) 1085
Zsp2I ATGCAT 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.