Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0000423

Physical Location & Seq

Genomic Coordinates Reverse (-)

254411 .. 257948

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1002600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGAACTTCTGCAGCTGTTCGTGACGGCCTCAATTCCGGTGTTGAAAGTGCTTTTGATAACAGCACTTGGCTCTTATCTTGCTCTTGATCGTGTCGATATTTTGGGGGAAGTTACTAGAAAGAACTTAAACACTGTTGTATTTTATGTGTTCAGTCCTGCTCTCGTGGGTTCCAACCTTGCGAAGACAATTACATATGAAAGCATGGTTAAAATGTGGTTCATGCCAGTGAATATCCTCATCACGTTTATAATTGGTTCCGTGCTCGGATGGATTCTCATCCAATTAACAAGGCCTCCTGCACATCTGCGAGGCCTTGTCTTGGGTTGCTGTGCTGCAGGAAATTTGGGTAACTTGCTCCTCATTATAGTCCCAGCAGTTTGTAAAGAAAAAGGGAGCCCGTTTGGAGCTCCTGATGTCTGTCACACATATGCTATGGCTTATGCTTCGCTCTCAATGGCGATAGGAGCCGTGTATTTGTGGTCCTATGTATATAATATTGTGCGGATATCTTCAACAAGGGGCACCCAAGATTCTAATCAGTCCGCCGAGAGGTCCCCTACATCCGACCAAGTAAGTTGCACTGAGCCGCTGCTTTCTTCAAAGGAATATGTCATAGTTGAGGAAAATGGGGATCAATATTCACTGCCATACACTGCTGCGCCTGAAGAAAAACCAAAGGCGACGACTTCAGGTAAACTAAAGCAACGTATAGTGATGGTGTTTGAAAAGATCAATCTGAAAACAATATTTGCCCCTTCAACTATTGGAGCGATTGTTGGTTTTGCAATCGGAGTCATTCCTCAGATTCGAAAATTACTGATAGGAGATGGTGCTCCTCTACGGGTGATTCAAGATACTGCTTATTTGTTGGGGGACGGAGCCATCCCAGCTCTCACTTTGATAATAGGAGGAAACCTACTTAAGGGTTTGAGAGGGTCAGGGATTCAGAAATCTCTTGTCGTTGGCATCATCGTTGTTCGTTATGTTGCCCTGCCTCTTATAGGCATATTGGTTATTAAAGGGGCACTGAAATTTGGGTTGGTGCACTCTGACCCATTATATCTGTTTGTTCTTCTGCTTCAGTTTTCACTCCCACCTGCGATGAACATAGGAACAATGACGCAATTATTCGGAGCAGGAGAGAATGAATGTTCAGTTATCATGCTGTGGACTTATGCTTTCGCGTCACTGTCGCTTACATTTTGGTCTGCCGCCTTCATGTGGACTGTGACACGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mem_trans

Protein Analysis

415

Amino Acids

44.78

Weight (kDa)

9.0

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mem_trans	PF03547	10 - 403	4.3e-78	Membrane transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca	FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica	MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica	Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis	pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis	RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata	RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora	Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii	Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa	Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha	Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana	Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	251
AarI	CACCTGC	1 cut(s)	1108
Acc36I	ACCTGC	1 cut(s)	1108
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	1 cut(s)	1187
AciI	CCGC	4 cut(s)	505, 546, 590, 1215
AclWI	GGATC	1 cut(s)	642
AcsI	RAATTY	2 cut(s)	343, 1034
AcuI	CTGAAG	3 cut(s)	675, 687, 1067
AfiI	CCNNNNNNNGG	5 cut(s)	322, 552, 925, 1004, 1224
AflII	CTTAAG	1 cut(s)	923
AgsI	TTSAA	6 cut(s)	46, 516, 603, 728, 762, 854
AjuI	GAANNNNNNNTTGG	2 cut(s)	1025, 1057
AleI	CACNNNNGTG	1 cut(s)	1240
AluBI	AGCT	3 cut(s)	16, 410, 893
AluI	AGCT	3 cut(s)	16, 410, 893
Alw21I	GWGCWC	4 cut(s)	267, 412, 838, 1050
Alw44I	GTGCAC	1 cut(s)	1046
AlwI	GGATC	1 cut(s)	642
AoxI	GGCC	3 cut(s)	27, 293, 313
ApaLI	GTGCAC	1 cut(s)	1046
ApeKI	GCWGC	4 cut(s)	13, 335, 592, 659
ApoI	RAATTY	2 cut(s)	343, 1034
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	2 cut(s)	483, 555
AsuHPI	GGTGA	1 cut(s)	859
AsuII	TTCGAA	1 cut(s)	811
AvaII	GGWCC	2 cut(s)	483, 555
BaeGI	GKGCMC	3 cut(s)	527, 1030, 1050
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	2 cut(s)	401, 412
BauI	CACGAG	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	4 cut(s)	267, 412, 838, 1050
BbvI	GCAGC	4 cut(s)	25, 322, 579, 646
BccI	CCATC	4 cut(s)	264, 712, 824, 893
BceAI	ACGGC	2 cut(s)	42, 455
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	2 cut(s)	11, 336
BfrI	CTTAAG	1 cut(s)	923
BfuAI	ACCTGC	1 cut(s)	1108
BisI	GCNGC	6 cut(s)	14, 336, 590, 593, 660, 1215
BlsI	GCNGC	6 cut(s)	15, 337, 591, 594, 661, 1216
Bme18I	GGWCC	2 cut(s)	483, 555
BmgT120I	GGNCC	2 cut(s)	483, 555
BmiI	GGNNCC	7 cut(s)	172, 259, 398, 469, 526, 557, 883
BmsI	GCATC	1 cut(s)	978
BpiI	GAAGAC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	811
BsaBI	GATNNNNATC	2 cut(s)	278, 537
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	4 cut(s)	280, 310, 762, 792
Bsc4I	CCNNNNNNNGG	5 cut(s)	322, 552, 925, 1004, 1224
Bse1I	ACTGG	1 cut(s)	227
Bse8I	GATNNNNATC	2 cut(s)	278, 537
BseGI	GGATG	4 cut(s)	275, 279, 563, 885
BseJI	GATNNNNATC	2 cut(s)	278, 537
BseLI	CCNNNNNNNGG	5 cut(s)	322, 552, 925, 1004, 1224
BseMII	CTCAG	2 cut(s)	576, 818
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	2 cut(s)	350, 828
BseSI	GKGCMC	3 cut(s)	527, 1030, 1050
BseXI	GCAGC	4 cut(s)	25, 322, 579, 646
BseYI	CCCAGC	2 cut(s)	373, 889
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	1187
BshFI	GGCC	3 cut(s)	29, 295, 315
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	4 cut(s)	267, 412, 838, 1050
BsiSI	CCGG	1 cut(s)	38
BslFI	GGGAC	3 cut(s)	356, 541, 890
BslI	CCNNNNNNNGG	5 cut(s)	322, 552, 925, 1004, 1224
BsmFI	GGGAC	3 cut(s)	356, 541, 890
BsnI	GGCC	3 cut(s)	29, 295, 315
Bsp119I	TTCGAA	1 cut(s)	811
Bsp1286I	GDGCHC	7 cut(s)	267, 401, 412, 527, 838, 1030, 1050
Bsp143I	GATC	3 cut(s)	88, 634, 732
BspACI	CCGC	4 cut(s)	505, 546, 590, 1215
BspANI	GGCC	3 cut(s)	29, 295, 315
BspCNI	CTCAG	2 cut(s)	577, 817
BspFNI	CGCG	1 cut(s)	1187
BspLI	GGNNCC	7 cut(s)	172, 259, 398, 469, 526, 557, 883
BspMAI	CTGCAG	2 cut(s)	15, 340
BspMI	ACCTGC	1 cut(s)	1108
BspPI	GGATC	1 cut(s)	642
BspT104I	TTCGAA	1 cut(s)	811
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	923
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	3 cut(s)	88, 634, 732
BssSI	CACGAG	1 cut(s)	164
Bst2BI	CACGAG	1 cut(s)	164
Bst4CI	ACNGT	4 cut(s)	136, 1194, 1231, 1242
BstAFI	CTTAAG	1 cut(s)	923
BstBI	TTCGAA	1 cut(s)	811
BstDEI	CTNAG	2 cut(s)	585, 804
BstENI	CCTNNNNNAGG	2 cut(s)	923, 1002
BstF5I	GGATG	4 cut(s)	275, 279, 563, 885
BstFNI	CGCG	1 cut(s)	1187
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	3 cut(s)	91, 637, 735
BstMBI	GATC	3 cut(s)	88, 634, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	467, 890
BstSFI	CTRYAG	2 cut(s)	11, 336
BstSLI	GKGCMC	3 cut(s)	527, 1030, 1050
BstUI	CGCG	1 cut(s)	1187
BstV1I	GCAGC	4 cut(s)	25, 322, 579, 646
BstV2I	GAAGAC	1 cut(s)	191
BsuRI	GGCC	3 cut(s)	29, 295, 315
BtgZI	GCGATG	1 cut(s)	1118
BtsCI	GGATG	4 cut(s)	275, 279, 563, 885
BtsI	GCAGTG	2 cut(s)	644, 654
BtsIMutI	CAGTG	7 cut(s)	132, 234, 582, 644, 654, 1028, 1190
BveI	ACCTGC	1 cut(s)	1108
CfoI	GCGC	1 cut(s)	664
Cfr13I	GGNCC	2 cut(s)	483, 555
CseI	GACGC	2 cut(s)	1132, 1176
CviAII	CATG	4 cut(s)	205, 223, 1165, 1222
DdeI	CTNAG	2 cut(s)	585, 804
DpnI	GATC	3 cut(s)	90, 636, 734
DpnII	GATC	3 cut(s)	88, 634, 732
EciI	GGCGGA	1 cut(s)	535
Ecl136II	GAGCTC	1 cut(s)	410
Eco147I	AGGCCT	2 cut(s)	295, 315
Eco24I	GRGCYC	2 cut(s)	401, 412
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	483, 555
Eco53kI	GAGCTC	1 cut(s)	410
Eco57I	CTGAAG	3 cut(s)	675, 687, 1067
EcoICRI	GAGCTC	1 cut(s)	410
EcoNI	CCTNNNNNAGG	2 cut(s)	923, 1002
EcoO109I	RGGNCCY	1 cut(s)	555
EcoRV	GATATC	1 cut(s)	510
EcoT38I	GRGCYC	2 cut(s)	401, 412
FaeI	CATG	4 cut(s)	208, 226, 1168, 1225
FaqI	GGGAC	3 cut(s)	356, 541, 890
FatI	CATG	4 cut(s)	204, 222, 1164, 1221
FauNDI	CATATG	2 cut(s)	196, 430
Fnu4HI	GCNGC	6 cut(s)	14, 336, 590, 593, 660, 1215
FokI	GGATG	4 cut(s)	266, 282, 550, 872
FriOI	GRGCYC	2 cut(s)	401, 412
Fsp4HI	GCNGC	6 cut(s)	14, 336, 590, 593, 660, 1215
FspBI	CTAG	1 cut(s)	117
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	6 cut(s)	14, 336, 590, 593, 660, 1215
GsaI	CCCAGC	2 cut(s)	377, 893
HaeIII	GGCC	3 cut(s)	29, 295, 315
HapII	CCGG	1 cut(s)	38
HgaI	GACGC	2 cut(s)	1132, 1176
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	4 cut(s)	208, 226, 1168, 1225
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HinfI	GANTC	6 cut(s)	274, 533, 795, 808, 850, 946
HpaII	CCGG	1 cut(s)	38
HphI	GGTGA	1 cut(s)	859
Hpy166II	GTNNAC	4 cut(s)	698, 1048, 1173, 1227
Hpy188I	TCNGA	8 cut(s)	269, 568, 741, 794, 807, 951, 1054, 1136
Hpy188III	TCNNGA	4 cut(s)	22, 86, 413, 854
Hpy8I	GTNNAC	4 cut(s)	698, 1048, 1173, 1227
Hpy99I	CGWCG	1 cut(s)	688
HpyAV	CCTTC	2 cut(s)	768, 1228
HpyCH4III	ACNGT	4 cut(s)	136, 1194, 1231, 1242
HpyCH4IV	ACGT	2 cut(s)	245, 709
HpyCH4V	TGCA	6 cut(s)	13, 302, 338, 582, 788, 1048
HpyF10VI	GCNNNNNNNGC	2 cut(s)	467, 890
HpyF3I	CTNAG	2 cut(s)	585, 804
HpySE526I	ACGT	2 cut(s)	245, 709
Hsp92II	CATG	4 cut(s)	208, 226, 1168, 1225
HspAI	GCGC	1 cut(s)	662
Kzo9I	GATC	3 cut(s)	88, 634, 732
LmnI	GCTCC	9 cut(s)	363, 396, 407, 415, 467, 770, 841, 881, 1136
Lsp1109I	GCAGC	4 cut(s)	25, 322, 579, 646
LweI	GCATC	1 cut(s)	978
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	245, 709
MaeIII	GTNAC	6 cut(s)	22, 112, 350, 422, 1188, 1231
MalI	GATC	3 cut(s)	90, 636, 734
MboI	GATC	3 cut(s)	88, 634, 732
MboII	GAAGA	5 cut(s)	196, 504, 591, 680, 1067
MhlI	GDGCHC	7 cut(s)	267, 401, 412, 527, 838, 1030, 1050
MluCI	AATT	8 cut(s)	33, 189, 252, 284, 343, 815, 1034, 1127
MlyI	GAGTC	1 cut(s)	804
MmeI	TCCRAC	2 cut(s)	198, 591
MseI	TTAA	5 cut(s)	128, 210, 287, 924, 1020
MslI	CAYNNNNRTG	3 cut(s)	227, 429, 1240
MspA1I	CMGCKG	2 cut(s)	16, 592
MspCI	CTTAAG	1 cut(s)	923
MspI	CCGG	1 cut(s)	38
MvnI	CGCG	1 cut(s)	1187
MwoI	GCNNNNNNNGC	2 cut(s)	467, 890
NdeI	CATATG	2 cut(s)	196, 430
NdeII	GATC	3 cut(s)	88, 634, 732
NlaIII	CATG	4 cut(s)	208, 226, 1168, 1225
NlaIV	GGNNCC	7 cut(s)	172, 259, 398, 469, 526, 557, 883
NmeAIII	GCCGAG	1 cut(s)	574
NmuCI	GTSAC	4 cut(s)	22, 422, 1188, 1231
NspV	TTCGAA	1 cut(s)	811
OliI	CACNNNNGTG	1 cut(s)	1240
PaqCI	CACCTGC	1 cut(s)	1108
PceI	AGGCCT	2 cut(s)	295, 315
PfeI	GAWTC	5 cut(s)	274, 533, 808, 850, 946
PkrI	GCNGC	6 cut(s)	15, 337, 591, 594, 661, 1216
PleI	GAGTC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	803
PpuMI	RGGWCCY	1 cut(s)	555
PsiI	TTATAA	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	555
PspFI	CCCAGC	2 cut(s)	373, 889
PspN4I	GGNNCC	7 cut(s)	172, 259, 398, 469, 526, 557, 883
PspPI	GGNCC	2 cut(s)	483, 555
PspPPI	RGGWCCY	1 cut(s)	555
PstI	CTGCAG	2 cut(s)	15, 340
PvuII	CAGCTG	1 cut(s)	16
RseI	CAYNNNNRTG	3 cut(s)	227, 429, 1240
SacI	GAGCTC	1 cut(s)	412
SaqAI	TTAA	5 cut(s)	128, 210, 287, 924, 1020
SatI	GCNGC	6 cut(s)	14, 336, 590, 593, 660, 1215
Sau3AI	GATC	3 cut(s)	88, 634, 732
Sau96I	GGNCC	2 cut(s)	483, 555
SchI	GAGTC	1 cut(s)	804
SduI	GDGCHC	7 cut(s)	267, 401, 412, 527, 838, 1030, 1050
SfaNI	GCATC	1 cut(s)	978
SfcI	CTRYAG	2 cut(s)	11, 336
SfuI	TTCGAA	1 cut(s)	811
SinI	GGWCC	2 cut(s)	483, 555
SmiMI	CAYNNNNRTG	3 cut(s)	227, 429, 1240
SmlI	CTYRAG	1 cut(s)	923
SmoI	CTYRAG	1 cut(s)	923
Sse9I	AATT	8 cut(s)	33, 189, 252, 284, 343, 815, 1034, 1127
SseBI	AGGCCT	2 cut(s)	295, 315
SsiI	CCGC	4 cut(s)	505, 546, 590, 1215
SspI	AATATT	3 cut(s)	499, 641, 750
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	412
StuI	AGGCCT	2 cut(s)	295, 315
TaaI	ACNGT	4 cut(s)	136, 1194, 1231, 1242
TaiI	ACGT	2 cut(s)	248, 712
TaqI	TCGA	2 cut(s)	96, 811
TasI	AATT	8 cut(s)	33, 189, 252, 284, 343, 815, 1034, 1127
TauI	GCSGC	2 cut(s)	592, 1217
TfiI	GAWTC	5 cut(s)	274, 533, 808, 850, 946
Tru1I	TTAA	5 cut(s)	128, 210, 287, 924, 1020
Tru9I	TTAA	5 cut(s)	128, 210, 287, 924, 1020
TscAI	CASTG	7 cut(s)	139, 234, 589, 651, 661, 1035, 1197
TseFI	GTSAC	4 cut(s)	22, 422, 1188, 1231
TseI	GCWGC	4 cut(s)	13, 335, 592, 659
Tsp45I	GTSAC	4 cut(s)	22, 422, 1188, 1231
TspDTI	ATGAA	5 cut(s)	211, 213, 1121, 1164, 1210
TspGWI	ACGGA	2 cut(s)	250, 894
TspRI	CASTG	7 cut(s)	139, 234, 589, 651, 661, 1035, 1197
Vha464I	CTTAAG	1 cut(s)	923
VneI	GTGCAC	1 cut(s)	1046
VpaK11BI	GGWCC	2 cut(s)	483, 555
XagI	CCTNNNNNAGG	2 cut(s)	923, 1002
XapI	RAATTY	2 cut(s)	343, 1034
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.