Rw7G025930

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000423
Physical Location & Seq
Forward (+)
32794223 .. 32802041
7819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G025930.1

Sequence Viewer

Length: 996 bp
ATGCCGGTGAATATTCTTCTTACATTCATTGTTGGTTCAATTTTTGGATGGATTCTCATGAAATTAACAAGAACTCCTCCACATTTGCGAGGTCTCGTCTTGGGTTGTTGCGCTGCAGGAAATTTGGGAAACCTTCTCCTCATTATTATTCCAGCAGTTTGTGAAGAATCAGGGAGTCCATTTGGAGATGCTGATACCTGTGATACTACTGGAACTACTTATGCTTCACTTTCAATGGCGATTGGAGCCATTTATTTGTGGACCTATGTGTATAATATTGTGCGGATATCTTCAAAGATGAGCGTCCAAGATTCCCTGCAGACCACCGACAGCTCGTCAACATCCAGCCACATAAGTTACACCGAGCCTCTACTTTCTATAGAGGACAATGTGGATCAATGTGAACCTCCCCGTAATGTATCCGAAGGAGATGCTAAGATGACATGTCTAGGTAAAACAAAGGAATGGATGGTGATGGTGAATGAAAAGCTCAATTTGAAAACAGTATTTTCCCCTTCAACTATTGCAGTGATTATTGGGTTTGCAGTTGGAATCATCTCTCCAATTCGAAACTTATTGATTGGAGACGACGCTCCTCTAGCGGTGATCGACGACACTACTTCGTTGTTAGGAGATGCTGCTATCCCGCTTCTTACTTTGATAATAGGAGGCAACCTTGTTAAAGGTTTGAGAGTGGGAGGGATACAAAAATCTATCCTTATTGGCATCATAATTGTTAAATATGTTGCGGCGCCTCTTACAGGAATATTGATTGTTAAAGGGGCAGTAAAATTTGGCTTTGTAAGCAATGATCCATTGTATCTGTTTGTTCTTCTGCTTCAGTTTGCTGTCCCTCCTGCAATGAACTTGGGAACCATCACTCAACTGTTCGGACAAGGAGAGAGTGAGTGTTCAGTTATCATGCTCTGGACTTACATTTTTGCTTCGCTATCGCTTACGTTTTGGTGTGCCTTCTTCTTGTGGCTTGTGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

331

Amino Acids

35.54

Weight (kDa)

4.93

Isoelectric Point (pI)

42.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 1 - 322 3e-58 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 751
AciI CCGC 4 cut(s) 283, 602, 647, 749
AclWI GGATC 2 cut(s) 402, 806
AcsI RAATTY 2 cut(s) 121, 791
AcuI CTGAAG 1 cut(s) 824
AcyI GRCGYC 1 cut(s) 752
AfiI CCNNNNNNNGG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 443
AgsI TTSAA 5 cut(s) 39, 234, 294, 499, 519
AhdI GACNNNNNGTC 1 cut(s) 334
AluBI AGCT 2 cut(s) 333, 490
AluI AGCT 2 cut(s) 333, 490
Alw26I GTCTC 2 cut(s) 98, 579
AlwI GGATC 2 cut(s) 402, 806
AoxI GGCC 1 cut(s) 990
ApeKI GCWGC 2 cut(s) 113, 638
ApoI RAATTY 2 cut(s) 121, 791
AspLEI GCGC 2 cut(s) 113, 754
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 4 cut(s) 19, 484, 490, 616
AsuII TTCGAA 1 cut(s) 568
AvaII GGWCC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 751
BbvI GCAGC 2 cut(s) 100, 625
BccI CCATC 4 cut(s) 42, 463, 469, 884
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BciVI GTATCC 2 cut(s) 430, 696
BcoDI GTCTC 2 cut(s) 98, 579
BfaI CTAG 2 cut(s) 449, 599
BfmI CTRYAG 3 cut(s) 114, 317, 378
BfoI RGCGCY 1 cut(s) 755
BfuI GTATCC 2 cut(s) 430, 696
BisI GCNGC 3 cut(s) 114, 639, 750
BlsI GCNGC 3 cut(s) 115, 640, 751
Bme18I GGWCC 1 cut(s) 261
BmeRI GACNNNNNGTC 1 cut(s) 334
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 3 cut(s) 247, 753, 874
BmsI GCATC 4 cut(s) 178, 421, 625, 735
Bpu14I TTCGAA 1 cut(s) 568
BsaHI GRCGYC 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 2 cut(s) 814, 867
BseGI GGATG 3 cut(s) 53, 341, 474
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 2 cut(s) 814, 867
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 3 cut(s) 66, 128, 585
BseXI GCAGC 2 cut(s) 100, 625
BshFI GGCC 1 cut(s) 992
BshNI GGYRCC 1 cut(s) 751
BsiSI CCGG 1 cut(s) 5
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 2 cut(s) 98, 579
BsmBI CGTCTC 1 cut(s) 579
BsmFI GGGAC 1 cut(s) 836
BsnI GGCC 1 cut(s) 992
Bso31I GGTCTC 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 568
Bsp143I GATC 3 cut(s) 394, 606, 811
BspACI CCGC 4 cut(s) 283, 602, 647, 749
BspANI GGCC 1 cut(s) 992
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 247, 753, 874
BspMAI CTGCAG 2 cut(s) 118, 321
BspPI GGATC 2 cut(s) 402, 806
BspT104I TTCGAA 1 cut(s) 568
BspT107I GGYRCC 1 cut(s) 751
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 2 cut(s) 814, 867
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 3 cut(s) 394, 606, 811
BssNI GRCGYC 1 cut(s) 752
Bst4CI ACNGT 2 cut(s) 505, 888
BstACI GRCGYC 1 cut(s) 752
BstBI TTCGAA 1 cut(s) 568
BstDEI CTNAG 1 cut(s) 435
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 3 cut(s) 53, 341, 474
BstH2I RGCGCY 1 cut(s) 755
BstHHI GCGC 2 cut(s) 113, 754
BstKTI GATC 3 cut(s) 397, 609, 814
BstMAI GTCTC 2 cut(s) 98, 579
BstMBI GATC 3 cut(s) 394, 606, 811
BstMWI GCNNNNNNNGC 3 cut(s) 245, 599, 804
BstNSI RCATGY 1 cut(s) 447
BstSFI CTRYAG 3 cut(s) 114, 317, 378
BstV1I GCAGC 2 cut(s) 100, 625
BsuI GTATCC 2 cut(s) 430, 696
BsuRI GGCC 1 cut(s) 992
BtsCI GGATG 3 cut(s) 53, 341, 474
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 1 cut(s) 534
CciI TCATGA 1 cut(s) 57
CfoI GCGC 2 cut(s) 113, 754
Cfr10I RCCGGY 1 cut(s) 4
Cfr13I GGNCC 1 cut(s) 261
CseI GACGC 2 cut(s) 292, 599
CviAII CATG 3 cut(s) 58, 444, 922
CviJI RGCY 8 cut(s) 248, 333, 348, 367, 490, 798, 985, 992
CviKI_1 RGCY 8 cut(s) 248, 333, 348, 367, 490, 798, 985, 992
DdeI CTNAG 1 cut(s) 435
DinI GGCGCC 1 cut(s) 753
DpnI GATC 3 cut(s) 396, 608, 813
DpnII GATC 3 cut(s) 394, 606, 811
DriI GACNNNNNGTC 1 cut(s) 334
Eam1105I GACNNNNNGTC 1 cut(s) 334
Eco31I GGTCTC 1 cut(s) 98
Eco32I GATATC 1 cut(s) 288
Eco47I GGWCC 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 824
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoRV GATATC 1 cut(s) 288
EgeI GGCGCC 1 cut(s) 753
EheI GGCGCC 1 cut(s) 753
Esp3I CGTCTC 1 cut(s) 579
FaeI CATG 3 cut(s) 61, 447, 925
FaqI GGGAC 1 cut(s) 836
FatI CATG 3 cut(s) 57, 443, 921
FauI CCCGC 1 cut(s) 654
Fnu4HI GCNGC 3 cut(s) 114, 639, 750
FokI GGATG 3 cut(s) 60, 328, 481
Fsp4HI GCNGC 3 cut(s) 114, 639, 750
FspBI CTAG 2 cut(s) 449, 599
GlaI GCGC 2 cut(s) 112, 753
GluI GCNGC 3 cut(s) 114, 639, 750
HaeII RGCGCY 1 cut(s) 755
HaeIII GGCC 1 cut(s) 992
HapII CCGG 1 cut(s) 5
HgaI GACGC 2 cut(s) 292, 599
HhaI GCGC 2 cut(s) 113, 754
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 3 cut(s) 61, 447, 925
Hin6I GCGC 2 cut(s) 111, 752
HinP1I GCGC 2 cut(s) 111, 752
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 5 cut(s) 52, 167, 175, 311, 552
HpaII CCGG 1 cut(s) 5
HphI GGTGA 4 cut(s) 19, 484, 490, 616
Hpy166II GTNNAC 3 cut(s) 261, 339, 404
Hpy188I TCNGA 2 cut(s) 424, 893
Hpy188III TCNNGA 2 cut(s) 58, 928
Hpy8I GTNNAC 3 cut(s) 261, 339, 404
Hpy99I CGWCG 2 cut(s) 593, 614
HpyAV CCTTC 4 cut(s) 143, 419, 525, 982
HpyCH4III ACNGT 2 cut(s) 505, 888
HpyCH4IV ACGT 1 cut(s) 959
HpyCH4V TGCA 5 cut(s) 116, 319, 527, 545, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 245, 599, 804
HpyF3I CTNAG 1 cut(s) 435
HpySE526I ACGT 1 cut(s) 959
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 3 cut(s) 61, 447, 925
HspAI GCGC 2 cut(s) 111, 752
KasI GGCGCC 1 cut(s) 751
Kzo9I GATC 3 cut(s) 394, 606, 811
LmnI GCTCC 2 cut(s) 245, 598
Lsp1109I GCAGC 2 cut(s) 100, 625
LweI GCATC 4 cut(s) 178, 421, 625, 735
MaeI CTAG 2 cut(s) 449, 599
MaeII ACGT 1 cut(s) 959
MaeIII GTNAC 1 cut(s) 356
MalI GATC 3 cut(s) 396, 608, 813
MboI GATC 3 cut(s) 394, 606, 811
MboII GAAGA 5 cut(s) 8, 176, 282, 824, 967
MluCI AATT 7 cut(s) 39, 62, 121, 493, 564, 732, 791
Mly113I GGCGCC 1 cut(s) 752
MlyI GAGTC 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 529
MseI TTAA 4 cut(s) 65, 681, 738, 777
MspI CCGG 1 cut(s) 5
MwoI GCNNNNNNNGC 3 cut(s) 245, 599, 804
NarI GGCGCC 1 cut(s) 752
NdeII GATC 3 cut(s) 394, 606, 811
NlaIII CATG 3 cut(s) 61, 447, 925
NlaIV GGNNCC 3 cut(s) 247, 753, 874
NspI RCATGY 1 cut(s) 447
NspV TTCGAA 1 cut(s) 568
PagI TCATGA 1 cut(s) 57
PciI ACATGT 1 cut(s) 443
PfeI GAWTC 4 cut(s) 52, 167, 311, 552
PkrI GCNGC 3 cut(s) 115, 640, 751
PleI GAGTC 1 cut(s) 183
PluTI GGCGCC 1 cut(s) 755
PpsI GAGTC 1 cut(s) 183
PscI ACATGT 1 cut(s) 443
PspN4I GGNNCC 3 cut(s) 247, 753, 874
PspPI GGNCC 1 cut(s) 261
PstI CTGCAG 2 cut(s) 118, 321
SaqAI TTAA 4 cut(s) 65, 681, 738, 777
SatI GCNGC 3 cut(s) 114, 639, 750
Sau3AI GATC 3 cut(s) 394, 606, 811
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 184
SfaNI GCATC 4 cut(s) 178, 421, 625, 735
SfcI CTRYAG 3 cut(s) 114, 317, 378
SfoI GGCGCC 1 cut(s) 753
SfuI TTCGAA 1 cut(s) 568
SinI GGWCC 1 cut(s) 261
Sse9I AATT 7 cut(s) 39, 62, 121, 493, 564, 732, 791
SsiI CCGC 4 cut(s) 283, 602, 647, 749
SspDI GGCGCC 1 cut(s) 751
SspI AATATT 3 cut(s) 13, 277, 768
SspMI CTAG 2 cut(s) 449, 599
TaaI ACNGT 2 cut(s) 505, 888
TaiI ACGT 1 cut(s) 962
TaqI TCGA 2 cut(s) 568, 609
TasI AATT 7 cut(s) 39, 62, 121, 493, 564, 732, 791
TauI GCSGC 1 cut(s) 752
TfiI GAWTC 4 cut(s) 52, 167, 311, 552
Tru1I TTAA 4 cut(s) 65, 681, 738, 777
Tru9I TTAA 4 cut(s) 65, 681, 738, 777
TscAI CASTG 1 cut(s) 534
TseI GCWGC 2 cut(s) 113, 638
TspDTI ATGAA 4 cut(s) 16, 74, 498, 878
TspRI CASTG 1 cut(s) 534
VpaK11BI GGWCC 1 cut(s) 261
XagI CCTNNNNNAGG 1 cut(s) 759
XapI RAATTY 2 cut(s) 121, 791
XceI RCATGY 1 cut(s) 447
XspI CTAG 2 cut(s) 449, 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.