Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Reverse (-)

16092742 .. 16095311

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTCTTATATTCCACCACATAAGAGGCATTCGAAGGATCCGACAAAGCCTACCCCTGTTCCAGATTCTCTTGTTACAAAATTCAAGAAGAACCTTGACTTTAAGAGTAGCACTAGCAGTGTTAAACGCAACAAGATTATCTATTCAGGAGATTCCATTTCCAAATGGTTTCTTGTTGGTTCAAATGGAATTGAGGACGATGTTCCTTCGTATGTTAAGTTTGTGCCCTTGTCCTCAGATTCTGTCGAGTGTAGAAAAGGAGAAAAGCCTTCAATACTGATGAACAACAATGTCCAAAATGTGAATATGAATATTGGAGAGAGGAAGGATGAGAGAACTCAGTGGCTATTAGTAGCTGAGAAGGTTATGGAGGATCTTGTGTTGGCATATGAGCGAGTTAAGACTGAAATGAAGGAGCATCATCATGTATCGAGACTGGTTGCTCGGTTTGGTAAAATTTTCTTCTATGGGAGTCAAGCTGGTCCTGTGGCTGAATGTTCACTAAAAAACTTGAATAAGATGTTCTCTACTGATCTCCCAATGTCTTACTTACAACACATAAAATCTAATGTTGTACCAAGCCATGGATTCTCTATTGATAAGGAGAAGGAAACATACACTGTGAAGGTATCGCATTATTCTCGTCCTAATGCAACCATCAACTGTAAATGTACCCGTAAGGAAGATGGACGGCTCAGTATGTACAAGGTCGACCTTAATCCTGTAAGGCATTTGGTTGTTGATGTGTCATGCATTGATAAGAATCTCGACATGAGACTAACGCTCACCGCTAAGAGGGAAATAACGTATCTCAGTGATAAAGAGATAGGTGACATTAAAGCGCTATTGGAATCAGCAACTGTTGATCCAAATGTAAAAGGCGGTTTAAGGTGGCCGTTTGGTAAAGCTTTATCTGAAGATGGATACAAAGAATTTGAAGTTTGTCACGTTAGAGCTACTATCTACAAAAATAAAACTCTAAGGCTTAGGGTAAGAGAGACTGATAGATTCAATGAGACGACTGGAACAGGGGAAACCAAGAGGGAGGTGAGTTTGACGCTTAAAGACATCGACACTAAAATACAGGAGCAGAACACTGAGAGGGGTTGTGTTTTGGAGATGCTACGAGATGCTCTTGGAACTATATGGGACTTCTTGCATTGCGATGCCTATCTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

393

Amino Acids

44.91

Weight (kDa)

8.95

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	42 - 384	2.6e-133	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	584
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	2 cut(s)	789, 882
AclWI	GGATC	4 cut(s)	32, 45, 381, 860
AcoI	YGGCCR	1 cut(s)	893
AcsI	RAATTY	3 cut(s)	80, 456, 932
AcuI	CTGAAG	1 cut(s)	936
AfaI	GTAC	3 cut(s)	576, 673, 704
AfeI	AGCGCT	1 cut(s)	843
AfiI	CCNNNNNNNGG	2 cut(s)	584, 795
AgsI	TTSAA	6 cut(s)	85, 183, 273, 514, 938, 1012
AluBI	AGCT	4 cut(s)	356, 479, 908, 956
AluI	AGCT	4 cut(s)	356, 479, 908, 956
Alw26I	GTCTC	4 cut(s)	427, 769, 992, 1010
AlwI	GGATC	4 cut(s)	32, 45, 381, 860
AlwNI	CAGNNNCTG	2 cut(s)	242, 860
Aor51HI	AGCGCT	1 cut(s)	843
AoxI	GGCC	1 cut(s)	893
ApoI	RAATTY	3 cut(s)	80, 456, 932
AspLEI	GCGC	1 cut(s)	844
AspS9I	GGNCC	1 cut(s)	482
AsuHPI	GGTGA	3 cut(s)	778, 842, 1060
AsuII	TTCGAA	1 cut(s)	32
AvaII	GGWCC	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	228
BamHI	GGATCC	1 cut(s)	37
BarI	GAAGNNNNNNTAC	2 cut(s)	599, 631
BccI	CCATC	3 cut(s)	665, 680, 914
BceAI	ACGGC	2 cut(s)	707, 880
BcgI	CGANNNNNNTGC	2 cut(s)	623, 657
BciVI	GTATCC	1 cut(s)	917
BcoDI	GTCTC	4 cut(s)	427, 769, 992, 1010
BfaI	CTAG	1 cut(s)	114
BfoI	RGCGCY	1 cut(s)	845
BfuI	GTATCC	1 cut(s)	917
Bme18I	GGWCC	1 cut(s)	482
BmgT120I	GGNCC	1 cut(s)	482
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	4 cut(s)	427, 1110, 1120, 1156
Bpu10I	CCTNAGC	1 cut(s)	986
Bpu14I	TTCGAA	1 cut(s)	32
BsaBI	GATNNNNATC	2 cut(s)	762, 1170
BsaJI	CCNNGG	1 cut(s)	583
Bsc4I	CCNNNNNNNGG	2 cut(s)	584, 795
Bse1I	ACTGG	2 cut(s)	441, 1027
Bse3DI	GCAATG	1 cut(s)	1159
Bse8I	GATNNNNATC	2 cut(s)	762, 1170
BseDI	CCNNGG	1 cut(s)	583
BseGI	GGATG	1 cut(s)	334
BseJI	GATNNNNATC	2 cut(s)	762, 1170
BseLI	CCNNNNNNNGG	2 cut(s)	584, 795
BseMI	GCAATG	1 cut(s)	1159
BseMII	CTCAG	6 cut(s)	249, 348, 353, 709, 826, 1089
BseNI	ACTGG	2 cut(s)	441, 1027
BseSI	GKGCMC	1 cut(s)	228
BshFI	GGCC	1 cut(s)	895
BslFI	GGGAC	1 cut(s)	1163
BslI	CCNNNNNNNGG	2 cut(s)	584, 795
BsmAI	GTCTC	4 cut(s)	427, 769, 992, 1010
BsmBI	CGTCTC	1 cut(s)	1010
BsmFI	GGGAC	1 cut(s)	1163
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	895
Bsp119I	TTCGAA	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	702
Bsp143I	GATC	4 cut(s)	37, 373, 532, 865
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	2 cut(s)	789, 882
BspANI	GGCC	1 cut(s)	895
BspCNI	CTCAG	6 cut(s)	248, 349, 352, 708, 825, 1090
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	4 cut(s)	32, 45, 381, 860
BspT104I	TTCGAA	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	1159
BsrGI	TGTACA	1 cut(s)	702
BsrI	ACTGG	2 cut(s)	441, 1027
BssECI	CCNNGG	1 cut(s)	583
BssMI	GATC	4 cut(s)	37, 373, 532, 865
BssT1I	CCWWGG	1 cut(s)	583
Bst4CI	ACNGT	3 cut(s)	622, 665, 862
BstAUI	TGTACA	1 cut(s)	702
BstBI	TTCGAA	1 cut(s)	32
BstDEI	CTNAG	9 cut(s)	235, 339, 357, 695, 792, 812, 980, 986, 1098
BstDSI	CCRYGG	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	334
BstH2I	RGCGCY	1 cut(s)	845
BstHHI	GCGC	1 cut(s)	844
BstKTI	GATC	4 cut(s)	40, 376, 535, 868
BstMAI	GTCTC	4 cut(s)	427, 769, 992, 1010
BstMBI	GATC	4 cut(s)	37, 373, 532, 865
BstSLI	GKGCMC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	37, 373
BstYI	RGATCY	2 cut(s)	37, 373
BsuI	GTATCC	1 cut(s)	917
BsuRI	GGCC	1 cut(s)	895
BtgI	CCRYGG	1 cut(s)	583
BtsCI	GGATG	1 cut(s)	334
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	5 cut(s)	124, 347, 618, 820, 1095
CaiI	CAGNNNCTG	2 cut(s)	242, 860
CfoI	GCGC	1 cut(s)	844
Cfr13I	GGNCC	1 cut(s)	482
CseI	GACGC	1 cut(s)	1066
Csp6I	GTAC	3 cut(s)	575, 672, 703
CviAII	CATG	5 cut(s)	425, 584, 750, 772, 1179
CviQI	GTAC	3 cut(s)	575, 672, 703
DdeI	CTNAG	9 cut(s)	235, 339, 357, 695, 792, 812, 980, 986, 1098
DpnI	GATC	4 cut(s)	39, 375, 534, 867
DpnII	GATC	4 cut(s)	37, 373, 532, 865
EaeI	YGGCCR	1 cut(s)	893
Eco130I	CCWWGG	1 cut(s)	583
Eco47I	GGWCC	1 cut(s)	482
Eco47III	AGCGCT	1 cut(s)	843
Eco57I	CTGAAG	1 cut(s)	936
EcoT14I	CCWWGG	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	755
ErhI	CCWWGG	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	1010
FaeI	CATG	5 cut(s)	428, 587, 753, 775, 1182
FaqI	GGGAC	1 cut(s)	1163
FatI	CATG	5 cut(s)	424, 583, 749, 771, 1178
FauNDI	CATATG	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	711
FokI	GGATG	1 cut(s)	341
FspBI	CTAG	1 cut(s)	114
GlaI	GCGC	1 cut(s)	843
HaeII	RGCGCY	1 cut(s)	845
HaeIII	GGCC	1 cut(s)	895
HgaI	GACGC	1 cut(s)	1066
HhaI	GCGC	1 cut(s)	844
Hin1II	CATG	5 cut(s)	428, 587, 753, 775, 1182
Hin6I	GCGC	1 cut(s)	842
HinP1I	GCGC	1 cut(s)	842
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	906
HinfI	GANTC	8 cut(s)	65, 152, 239, 472, 588, 763, 851, 1008
HphI	GGTGA	3 cut(s)	778, 842, 1060
Hpy166II	GTNNAC	2 cut(s)	500, 712
Hpy188I	TCNGA	3 cut(s)	42, 238, 916
Hpy188III	TCNNGA	5 cut(s)	62, 85, 147, 432, 767
Hpy8I	GTNNAC	2 cut(s)	500, 712
HpyAV	CCTTC	8 cut(s)	28, 216, 279, 319, 355, 406, 601, 619
HpyCH4III	ACNGT	3 cut(s)	622, 665, 862
HpyCH4IV	ACGT	2 cut(s)	806, 948
HpyCH4V	TGCA	3 cut(s)	653, 753, 1159
HpyF3I	CTNAG	9 cut(s)	235, 339, 357, 695, 792, 812, 980, 986, 1098
HpySE526I	ACGT	2 cut(s)	806, 948
Hsp92II	CATG	5 cut(s)	428, 587, 753, 775, 1182
HspAI	GCGC	1 cut(s)	842
Kzo9I	GATC	4 cut(s)	37, 373, 532, 865
LmnI	GCTCC	2 cut(s)	415, 1087
LweI	GCATC	4 cut(s)	427, 1110, 1120, 1156
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	2 cut(s)	806, 948
MaeIII	GTNAC	3 cut(s)	73, 830, 944
MalI	GATC	4 cut(s)	39, 375, 534, 867
MboI	GATC	4 cut(s)	37, 373, 532, 865
MboII	GAAGA	4 cut(s)	100, 454, 695, 929
MflI	RGATCY	2 cut(s)	37, 373
MhlI	GDGCHC	1 cut(s)	228
MluCI	AATT	4 cut(s)	80, 189, 456, 932
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	9 cut(s)	18, 187, 244, 315, 364, 789, 1035, 1039, 1095
Mph1103I	ATGCAT	1 cut(s)	755
MseI	TTAA	8 cut(s)	102, 123, 216, 399, 717, 837, 887, 1062
MslI	CAYNNNNRTG	2 cut(s)	423, 1164
Mva1269I	GAATGC	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	583
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	4 cut(s)	37, 373, 532, 865
NlaIII	CATG	5 cut(s)	428, 587, 753, 775, 1182
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	830, 944
NsiI	ATGCAT	1 cut(s)	755
NspV	TTCGAA	1 cut(s)	32
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	7 cut(s)	65, 152, 239, 588, 763, 851, 1008
PflMI	CCANNNNNTGG	1 cut(s)	584
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	482
PstNI	CAGNNNCTG	2 cut(s)	242, 860
PsuI	RGATCY	2 cut(s)	37, 373
RsaI	GTAC	3 cut(s)	576, 673, 704
RsaNI	GTAC	3 cut(s)	575, 672, 703
RseI	CAYNNNNRTG	2 cut(s)	423, 1164
SalI	GTCGAC	1 cut(s)	710
SaqAI	TTAA	8 cut(s)	102, 123, 216, 399, 717, 837, 887, 1062
Sau3AI	GATC	4 cut(s)	37, 373, 532, 865
Sau96I	GGNCC	1 cut(s)	482
SchI	GAGTC	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	228
SfaNI	GCATC	4 cut(s)	427, 1110, 1120, 1156
SfuI	TTCGAA	1 cut(s)	32
SinI	GGWCC	1 cut(s)	482
SmiMI	CAYNNNNRTG	2 cut(s)	423, 1164
Sse9I	AATT	4 cut(s)	80, 189, 456, 932
SsiI	CCGC	2 cut(s)	789, 882
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	583
TaaI	ACNGT	3 cut(s)	622, 665, 862
TaiI	ACGT	2 cut(s)	809, 951
TaqI	TCGA	6 cut(s)	32, 246, 431, 711, 768, 1071
TasI	AATT	4 cut(s)	80, 189, 456, 932
TatI	WGTACW	1 cut(s)	702
TfiI	GAWTC	7 cut(s)	65, 152, 239, 588, 763, 851, 1008
Tru1I	TTAA	8 cut(s)	102, 123, 216, 399, 717, 837, 887, 1062
Tru9I	TTAA	8 cut(s)	102, 123, 216, 399, 717, 837, 887, 1062
TscAI	CASTG	5 cut(s)	124, 347, 625, 820, 1102
TseFI	GTSAC	2 cut(s)	830, 944
Tsp45I	GTSAC	2 cut(s)	830, 944
TspDTI	ATGAA	3 cut(s)	296, 323, 425
TspRI	CASTG	5 cut(s)	124, 347, 625, 820, 1102
Van91I	CCANNNNNTGG	1 cut(s)	584
VpaK11BI	GGWCC	1 cut(s)	482
XapI	RAATTY	3 cut(s)	80, 456, 932
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	1 cut(s)	114
Zsp2I	ATGCAT	1 cut(s)	755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.