Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017810.1

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

12807 .. 14690

Gene Structure 1884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017810.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggtggtggatatgtctgtccctaataagaatctggacctgagactgatgttaaacatgaagagagtcgtaacaactcacactgatgatgagatgcaaagcattagggatctggttgattctgcaattgcagatccagatgtgaagggtgggttgagatggcccctggagaagacatgttctggaaagtacaacgttgttggggcctggcatgtaagagccaaagtatataaaaatcagtcattaagatttaacgtcaggcatgccgatcgatttgatttcagaacctcaattggtgaagtttcttgggagatcagtctgaggttgaaaaagctagtctcaaagttgaaggaagagaaggttgaagttggctcggtttctgagatgctggaggaaaatatgaagttcatatatgacaacttcttaagcttcgattcggacaccaacatcgacgactacgatgcagccgcagtcgtcaattccgaagacgacgaggatcaccatccccaaaactacgccgtcgtttcctactcgcagctgcttcccaatggcaaattcagtgaagaagaagaagaagagattggaggaagttctgattcagagatcacgagagcgatcagagaggatgagagtcgctggaatgcgctgttgacgcacgagaatgcgaccagggttatgggcggctgctggagtcagagttgcggtggcagaagtggtcgagcggccttgatggtggcggtggtcgtgggttcattgacggcttgtgtcgccgactgcctttcatgttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.38

Weight (kDa)

4.9

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	722
AciI	CCGC	5 cut(s)	468, 681, 702, 722, 737
AclI	AACGTT	1 cut(s)	195
AclWI	GGATC	3 cut(s)	117, 128, 504
AcsI	RAATTY	1 cut(s)	554
AfaI	GTAC	1 cut(s)	191
AflII	CTTAAG	1 cut(s)	424
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	328, 349, 365
AjnI	CCWGG	3 cut(s)	165, 206, 668
AjuI	GAANNNNNNNTTGG	4 cut(s)	539, 564, 571, 596
AluBI	AGCT	3 cut(s)	334, 429, 538
AluI	AGCT	3 cut(s)	334, 429, 538
Alw26I	GTCTC	2 cut(s)	37, 343
AlwI	GGATC	3 cut(s)	117, 128, 504
AoxI	GGCC	3 cut(s)	161, 204, 723
ApeKI	GCWGC	4 cut(s)	464, 535, 538, 684
ApoI	RAATTY	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	646
AspS9I	GGNCC	3 cut(s)	37, 162, 204
AsuHPI	GGTGA	2 cut(s)	308, 491
AvaII	GGWCC	1 cut(s)	37
BauI	CACGAG	2 cut(s)	607, 656
BbsI	GAAGAC	2 cut(s)	179, 492
BbvI	GCAGC	4 cut(s)	476, 525, 547, 671
BccI	CCATC	3 cut(s)	153, 510, 724
BceAI	ACGGC	2 cut(s)	503, 774
BcgI	CGANNNNNNTGC	4 cut(s)	251, 285, 443, 477
BciT130I	CCWGG	3 cut(s)	167, 208, 670
BcoDI	GTCTC	2 cut(s)	37, 343
BfaI	CTAG	1 cut(s)	335
BfrI	CTTAAG	1 cut(s)	424
BisI	GCNGC	7 cut(s)	465, 468, 536, 539, 682, 685, 723
BlsI	GCNGC	7 cut(s)	466, 469, 537, 540, 683, 686, 724
Bme1390I	CCNGG	3 cut(s)	167, 208, 670
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	3 cut(s)	37, 162, 204
BmiI	GGNNCC	2 cut(s)	164, 205
BmrFI	CCNGG	3 cut(s)	167, 208, 670
BmsI	GCATC	3 cut(s)	84, 375, 451
BpiI	GAAGAC	2 cut(s)	179, 492
BpmI	CTGGAG	3 cut(s)	188, 410, 709
Bsa29I	ATCGAT	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	501
BsaJI	CCNNGG	2 cut(s)	165, 669
BsaXI	ACNNNNNCTCC	2 cut(s)	682, 712
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	3 cut(s)	167, 208, 670
BseCI	ATCGAT	1 cut(s)	271
BseDI	CCNNGG	2 cut(s)	165, 669
BseGI	GGATG	2 cut(s)	502, 631
BseJI	GATNNNNATC	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	32, 311, 372
BseXI	GCAGC	4 cut(s)	476, 525, 547, 671
Bsh1285I	CGRYCG	1 cut(s)	271
BshFI	GGCC	3 cut(s)	163, 206, 725
BshVI	ATCGAT	1 cut(s)	271
BsiEI	CGRYCG	1 cut(s)	271
BslFI	GGGAC	1 cut(s)	5
BsmAI	GTCTC	2 cut(s)	37, 343
BsmFI	GGGAC	1 cut(s)	5
BsmI	GAATGC	2 cut(s)	646, 667
BsnI	GGCC	3 cut(s)	163, 206, 725
Bsp143I	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
BspACI	CCGC	5 cut(s)	468, 681, 702, 722, 737
BspANI	GGCC	3 cut(s)	163, 206, 725
BspCNI	CTCAG	3 cut(s)	33, 312, 373
BspDI	ATCGAT	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	164, 205
BspPI	GGATC	3 cut(s)	117, 128, 504
BspTI	CTTAAG	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	722
BssECI	CCNNGG	2 cut(s)	165, 669
BssMI	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
BssSI	CACGAG	2 cut(s)	607, 656
Bst2BI	CACGAG	2 cut(s)	607, 656
Bst2UI	CCWGG	3 cut(s)	167, 208, 670
Bst6I	CTCTTC	3 cut(s)	56, 348, 570
BstAFI	CTTAAG	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	264
BstDEI	CTNAG	3 cut(s)	41, 320, 381
BstF5I	GGATG	2 cut(s)	502, 631
BstHHI	GCGC	1 cut(s)	646
BstKTI	GATC	7 cut(s)	112, 136, 271, 315, 499, 606, 618
BstMAI	GTCTC	2 cut(s)	37, 343
BstMBI	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
BstMCI	CGRYCG	1 cut(s)	271
BstMWI	GCNNNNNNNGC	2 cut(s)	652, 767
BstNI	CCWGG	3 cut(s)	167, 208, 670
BstNSI	RCATGY	3 cut(s)	180, 215, 266
BstSCI	CCNGG	3 cut(s)	165, 206, 668
BstV1I	GCAGC	4 cut(s)	476, 525, 547, 671
BstV2I	GAAGAC	2 cut(s)	179, 492
BstX2I	RGATCY	2 cut(s)	109, 133
BstXI	CCANNNNNNTGG	1 cut(s)	676
BstYI	RGATCY	2 cut(s)	109, 133
Bsu15I	ATCGAT	1 cut(s)	271
BsuRI	GGCC	3 cut(s)	163, 206, 725
BsuTUI	ATCGAT	1 cut(s)	271
BtsCI	GGATG	2 cut(s)	502, 631
BtsIMutI	CAGTG	2 cut(s)	81, 565
Cac8I	GCNNGC	1 cut(s)	264
CfoI	GCGC	1 cut(s)	646
Cfr13I	GGNCC	3 cut(s)	37, 162, 204
ClaI	ATCGAT	1 cut(s)	271
CseI	GACGC	1 cut(s)	661
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	5 cut(s)	58, 177, 212, 263, 783
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	3 cut(s)	41, 320, 381
DpnI	GATC	7 cut(s)	111, 135, 270, 314, 498, 605, 617
DpnII	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
Eam1104I	CTCTTC	3 cut(s)	56, 348, 570
EarI	CTCTTC	3 cut(s)	56, 348, 570
Eco47I	GGWCC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	204
EcoRII	CCWGG	3 cut(s)	165, 206, 668
FaeI	CATG	5 cut(s)	61, 180, 215, 266, 786
FaqI	GGGAC	1 cut(s)	5
FatI	CATG	5 cut(s)	57, 176, 211, 262, 782
Fnu4HI	GCNGC	7 cut(s)	465, 468, 536, 539, 682, 685, 723
FokI	GGATG	2 cut(s)	489, 638
Fsp4HI	GCNGC	7 cut(s)	465, 468, 536, 539, 682, 685, 723
FspBI	CTAG	1 cut(s)	335
GlaI	GCGC	1 cut(s)	645
GluI	GCNGC	7 cut(s)	465, 468, 536, 539, 682, 685, 723
GsuI	CTGGAG	3 cut(s)	188, 410, 709
HaeIII	GGCC	3 cut(s)	163, 206, 725
HgaI	GACGC	1 cut(s)	661
HhaI	GCGC	1 cut(s)	646
Hin1II	CATG	5 cut(s)	61, 180, 215, 266, 786
Hin6I	GCGC	1 cut(s)	644
HinP1I	GCGC	1 cut(s)	644
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HindIII	AAGCTT	1 cut(s)	427
HinfI	GANTC	7 cut(s)	31, 66, 119, 434, 596, 631, 691
HphI	GGTGA	2 cut(s)	308, 491
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	9 cut(s)	284, 321, 382, 439, 484, 595, 601, 620, 696
Hpy188III	TCNNGA	4 cut(s)	35, 137, 183, 607
Hpy8I	GTNNAC	1 cut(s)	651
Hpy99I	CGWCG	3 cut(s)	455, 494, 524
HpyAV	CCTTC	3 cut(s)	139, 343, 352
HpyCH4IV	ACGT	2 cut(s)	195, 255
HpyCH4V	TGCA	4 cut(s)	97, 125, 131, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	652, 767
HpyF3I	CTNAG	3 cut(s)	41, 320, 381
HpySE526I	ACGT	2 cut(s)	195, 255
Hsp92II	CATG	5 cut(s)	61, 180, 215, 266, 786
HspAI	GCGC	1 cut(s)	644
Kzo9I	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
Lsp1109I	GCAGC	4 cut(s)	476, 525, 547, 671
LweI	GCATC	3 cut(s)	84, 375, 451
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	2 cut(s)	195, 255
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	7 cut(s)	111, 135, 270, 314, 498, 605, 617
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
MboII	GAAGA	9 cut(s)	73, 184, 365, 497, 575, 578, 581, 584, 587
MfeI	CAATTG	2 cut(s)	126, 291
MflI	RGATCY	2 cut(s)	109, 133
MluCI	AATT	4 cut(s)	126, 291, 478, 554
MlyI	GAGTC	3 cut(s)	75, 640, 700
MnlI	CCTC	6 cut(s)	298, 315, 385, 487, 578, 616
MseI	TTAA	5 cut(s)	53, 245, 252, 425, 787
MslI	CAYNNNNRTG	2 cut(s)	84, 660
MspA1I	CMGCKG	1 cut(s)	538
MspCI	CTTAAG	1 cut(s)	424
MspR9I	CCNGG	3 cut(s)	167, 208, 670
MunI	CAATTG	2 cut(s)	126, 291
Mva1269I	GAATGC	2 cut(s)	646, 667
MvaI	CCWGG	3 cut(s)	167, 208, 670
MwoI	GCNNNNNNNGC	2 cut(s)	652, 767
NdeII	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
NlaIII	CATG	5 cut(s)	61, 180, 215, 266, 786
NlaIV	GGNNCC	2 cut(s)	164, 205
NspI	RCATGY	3 cut(s)	180, 215, 266
PaeI	GCATGC	1 cut(s)	266
PciI	ACATGT	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	2 cut(s)	456, 480
PctI	GAATGC	2 cut(s)	646, 667
PfeI	GAWTC	4 cut(s)	31, 119, 434, 596
PkrI	GCNGC	7 cut(s)	466, 469, 537, 540, 683, 686, 724
Ple19I	CGATCG	1 cut(s)	271
PleI	GAGTC	3 cut(s)	74, 639, 699
PpsI	GAGTC	3 cut(s)	74, 639, 699
PscI	ACATGT	1 cut(s)	176
Psp1406I	AACGTT	1 cut(s)	195
Psp6I	CCWGG	3 cut(s)	165, 206, 668
PspGI	CCWGG	3 cut(s)	165, 206, 668
PspN4I	GGNNCC	2 cut(s)	164, 205
PspPI	GGNCC	3 cut(s)	37, 162, 204
PsuI	RGATCY	2 cut(s)	109, 133
PvuI	CGATCG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	538
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	2 cut(s)	84, 660
SaqAI	TTAA	5 cut(s)	53, 245, 252, 425, 787
SatI	GCNGC	7 cut(s)	465, 468, 536, 539, 682, 685, 723
Sau3AI	GATC	7 cut(s)	109, 133, 268, 312, 496, 603, 615
Sau96I	GGNCC	3 cut(s)	37, 162, 204
SchI	GAGTC	3 cut(s)	75, 640, 700
ScrFI	CCNGG	3 cut(s)	167, 208, 670
SetI	ASST	9 cut(s)	42, 198, 258, 290, 326, 336, 363, 431, 540
SfaNI	GCATC	3 cut(s)	84, 375, 451
SinI	GGWCC	1 cut(s)	37
SmiMI	CAYNNNNRTG	2 cut(s)	84, 660
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SphI	GCATGC	1 cut(s)	266
Sse9I	AATT	4 cut(s)	126, 291, 478, 554
SsiI	CCGC	5 cut(s)	468, 681, 702, 722, 737
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	3 cut(s)	165, 206, 668
TaiI	ACGT	2 cut(s)	198, 258
TaqI	TCGA	4 cut(s)	271, 432, 450, 718
TasI	AATT	4 cut(s)	126, 291, 478, 554
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	3 cut(s)	470, 684, 725
TfiI	GAWTC	4 cut(s)	31, 119, 434, 596
Tru1I	TTAA	5 cut(s)	53, 245, 252, 425, 787
Tru9I	TTAA	5 cut(s)	53, 245, 252, 425, 787
TscAI	CASTG	2 cut(s)	88, 565
TseI	GCWGC	4 cut(s)	464, 535, 538, 684
TspDTI	ATGAA	5 cut(s)	74, 397, 416, 741, 771
TspRI	CASTG	2 cut(s)	88, 565
Vha464I	CTTAAG	1 cut(s)	424
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	3 cut(s)	180, 215, 266
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.