Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

31481014 .. 31487896

Gene Structure 6883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1235900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCTTACGTTCCACCACACAAGCGGCACTCGAAGGAACCGGAGAGGCCATTGCTGACTCCAGAGCTGCTTGCTCCTCCATTCAAGAAAAACTTAAACGTCAAGCCATATAATAAGTCTAATGTGGAATGGACTGTAAAAATAGTTTATGCAGATCATTCTACATCGAGATGGCTCACCATTGGTTTGGATGACGAGAACCAATTTCTGCCTTCTGTTAATCTTATGCCCATTTACTTGGAGTCCACTGAGCCAAAAGTTGGAGAAAACCGTCTAGCTTTAATCAATACTAGTCTAGATAATGAAGGTGATGAGGTGAAATGGAATTTGCCAAGGAGTCCTGGGGTATCTATAACAGAAAATGTGCTGGAAGACTTGGTTTCTTCTTTTAAACACGTGAAGAATGAAATGAAGTGCGCAAAGCTCAAAGAAGTAAATCCTACTTTGATTGCTAGAGTTGGGAAAGTACTTTTTCGTAGCCCTTCAATTGACATGGAATCCATCAGAAAAAATTTGTGTCCTGAAATCTTGAAACAATTGAGGAAATCATTTTATACAAACATTCCTGTTTCATATAAGGAAAATATTGTGAACGAAGTTGTCCCGAAAATTGGAGTTGATTTCGAAGAGGAGAAAGATACATTCCAAATAAAGGTTGAACTGAATCAACTGCGTAACATGGTCACGGACATTTCATGCACTACTAAGAGTCTGGTCCTGAGACTAATGCTATGCACGAAGAGACTCGTAACAGATCTGACTGATGATGAGATGCAAAGCATTAGGGATCTGTTTAATTCGGCAATTCTCGATCCATATGTGAAGGGTGGGTTGAGGTGGCCTCTGGGAAAGGAGTCTTCCGGAGATAAATATAAAGTTGTTGGGGTTTGGCACGTAATAGCTAATACGTATAAAAATTCATCACTGAGACTGAAAGTAAGACATGCTGATCGATTCGATTTTAGAACCTTAACTGGGGAAGCTACTTGGGAGACAAGTCTGATGCTGAAAAAGGTCATGTCAATGTTGCAGGAAGAGAATGTTGAAGTCAGCTCAATTTCTGAGGTACTCAAGGAAGATGTGCAGCTGATATGGGATAACTTCTTGAGCTGTAAACGTTTTCTAACAAGAAATTGCATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

382

Amino Acids

43.86

Weight (kDa)

8.36

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	44 - 219	2.5e-57	Domain of unknown function (DUF7903)
DUF7903	PF25475	218 - 368	3.7e-74	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	418
AccB7I	CCANNNNNTGG	1 cut(s)	260
AccIII	TCCGGA	1 cut(s)	860
AciI	CCGC	1 cut(s)	25
AclI	AACGTT	1 cut(s)	1117
AclWI	GGATC	2 cut(s)	795, 806
AcsI	RAATTY	3 cut(s)	325, 511, 916
AcvI	CACGTG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	468, 1068
AfiI	CCNNNNNNNGG	4 cut(s)	260, 611, 652, 975
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	5 cut(s)	85, 486, 532, 659, 1046
AhlI	ACTAGT	1 cut(s)	290
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	8 cut(s)	67, 278, 424, 902, 983, 1053, 1087, 1110
AluI	AGCT	8 cut(s)	67, 278, 424, 902, 983, 1053, 1087, 1110
Alw26I	GTCTC	4 cut(s)	715, 736, 922, 986
AlwI	GGATC	2 cut(s)	795, 806
Aor13HI	TCCGGA	1 cut(s)	860
AoxI	GGCC	2 cut(s)	47, 839
ApeKI	GCWGC	2 cut(s)	67, 1084
ApoI	RAATTY	3 cut(s)	325, 511, 916
AspLEI	GCGC	1 cut(s)	419
AspS9I	GGNCC	1 cut(s)	715
AsuHPI	GGTGA	3 cut(s)	169, 320, 328
AsuII	TTCGAA	1 cut(s)	624
AvaII	GGWCC	1 cut(s)	715
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	2 cut(s)	378, 849
BbvI	GCAGC	2 cut(s)	54, 1096
BccI	CCATC	2 cut(s)	165, 509
BciT130I	CCWGG	1 cut(s)	342
BcoDI	GTCTC	4 cut(s)	715, 736, 922, 986
BcuI	ACTAGT	1 cut(s)	290
BfaI	CTAG	4 cut(s)	275, 291, 296, 453
BglII	AGATCT	1 cut(s)	754
BisI	GCNGC	3 cut(s)	26, 68, 1085
BlsI	GCNGC	3 cut(s)	27, 69, 1086
BmcAI	AGTACT	1 cut(s)	468
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	715
BmgT120I	GGNCC	1 cut(s)	715
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	984
BmsI	GCATC	2 cut(s)	762, 993
BmuI	ACTGGG	1 cut(s)	984
BpiI	GAAGAC	2 cut(s)	378, 849
BplI	GAGNNNNNCTC	2 cut(s)	826, 858
BpmI	CTGGAG	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	624
BpuEI	CTTGAG	2 cut(s)	1055, 1126
Bsa29I	ATCGAT	1 cut(s)	952
BsaAI	YACGTR	3 cut(s)	397, 895, 909
BsaJI	CCNNGG	2 cut(s)	332, 341
BsaWI	WCCGGW	2 cut(s)	40, 860
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 611, 652, 975
Bse1I	ACTGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	860
BseBI	CCWGG	1 cut(s)	342
BseCI	ATCGAT	1 cut(s)	952
BseDI	CCNNGG	2 cut(s)	332, 341
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	4 cut(s)	260, 611, 652, 975
BseMI	GCAATG	1 cut(s)	50
BseMII	CTCAG	4 cut(s)	240, 710, 917, 1053
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	2 cut(s)	66, 644
BseXI	GCAGC	2 cut(s)	54, 1096
BsgI	GTGCAG	1 cut(s)	1103
BshFI	GGCC	2 cut(s)	49, 841
BshVI	ATCGAT	1 cut(s)	952
BsiSI	CCGG	2 cut(s)	41, 861
BslFI	GGGAC	1 cut(s)	587
BslI	CCNNNNNNNGG	4 cut(s)	260, 611, 652, 975
BsmAI	GTCTC	4 cut(s)	715, 736, 922, 986
BsmFI	GGGAC	1 cut(s)	587
BsnI	GGCC	2 cut(s)	49, 841
Bsp119I	TTCGAA	1 cut(s)	624
Bsp13I	TCCGGA	1 cut(s)	860
Bsp143I	GATC	5 cut(s)	154, 754, 787, 811, 949
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	2 cut(s)	49, 841
BspCNI	CTCAG	4 cut(s)	241, 711, 918, 1054
BspDI	ATCGAT	1 cut(s)	952
BspEI	TCCGGA	1 cut(s)	860
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	2 cut(s)	795, 806
BspT104I	TTCGAA	1 cut(s)	624
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	1 cut(s)	979
BssECI	CCNNGG	2 cut(s)	332, 341
BssMI	GATC	5 cut(s)	154, 754, 787, 811, 949
BssT1I	CCWWGG	1 cut(s)	332
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	2 cut(s)	136, 272
Bst6I	CTCTTC	3 cut(s)	621, 734, 1029
BstBAI	YACGTR	3 cut(s)	397, 895, 909
BstBI	TTCGAA	1 cut(s)	624
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	5 cut(s)	249, 705, 719, 926, 1062
BstF5I	GGATG	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	419
BstKTI	GATC	5 cut(s)	157, 757, 790, 814, 952
BstMAI	GTCTC	4 cut(s)	715, 736, 922, 986
BstMBI	GATC	5 cut(s)	154, 754, 787, 811, 949
BstNI	CCWGG	1 cut(s)	342
BstNSI	RCATGY	2 cut(s)	947, 1141
BstSCI	CCNGG	1 cut(s)	340
BstSNI	TACGTA	1 cut(s)	909
BstV1I	GCAGC	2 cut(s)	54, 1096
BstV2I	GAAGAC	2 cut(s)	378, 849
BstX2I	RGATCY	2 cut(s)	754, 787
BstXI	CCANNNNNNTGG	2 cut(s)	187, 238
BstYI	RGATCY	2 cut(s)	754, 787
Bsu15I	ATCGAT	1 cut(s)	952
BsuRI	GGCC	2 cut(s)	49, 841
BsuTUI	ATCGAT	1 cut(s)	952
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	246, 923
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	715
ClaI	ATCGAT	1 cut(s)	952
Csp6I	GTAC	2 cut(s)	467, 1067
CviAII	CATG	6 cut(s)	493, 679, 696, 944, 1018, 1138
CviQI	GTAC	2 cut(s)	467, 1067
DdeI	CTNAG	5 cut(s)	249, 705, 719, 926, 1062
DpnI	GATC	5 cut(s)	156, 756, 789, 813, 951
DpnII	GATC	5 cut(s)	154, 754, 787, 811, 949
DraI	TTTAAA	1 cut(s)	391
Eam1104I	CTCTTC	3 cut(s)	621, 734, 1029
EarI	CTCTTC	3 cut(s)	621, 734, 1029
Eco105I	TACGTA	1 cut(s)	909
Eco130I	CCWWGG	1 cut(s)	332
Eco47I	GGWCC	1 cut(s)	715
Eco72I	CACGTG	1 cut(s)	397
EcoRII	CCWGG	1 cut(s)	340
EcoT14I	CCWWGG	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	6 cut(s)	496, 682, 699, 947, 1021, 1141
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FaqI	GGGAC	1 cut(s)	587
FatI	CATG	6 cut(s)	492, 678, 695, 943, 1017, 1137
FauNDI	CATATG	1 cut(s)	817
Fnu4HI	GCNGC	3 cut(s)	26, 68, 1085
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	26, 68, 1085
FspBI	CTAG	4 cut(s)	275, 291, 296, 453
FspI	TGCGCA	1 cut(s)	418
GlaI	GCGC	1 cut(s)	418
GluI	GCNGC	3 cut(s)	26, 68, 1085
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	49, 841
HapII	CCGG	2 cut(s)	41, 861
HhaI	GCGC	1 cut(s)	419
Hin1II	CATG	6 cut(s)	496, 682, 699, 947, 1021, 1141
Hin6I	GCGC	1 cut(s)	417
HinP1I	GCGC	1 cut(s)	417
HinfI	GANTC	9 cut(s)	58, 242, 337, 497, 664, 709, 744, 854, 954
HpaII	CCGG	2 cut(s)	41, 861
HphI	GGTGA	3 cut(s)	169, 320, 328
Hpy166II	GTNNAC	3 cut(s)	246, 592, 1115
Hpy188I	TCNGA	4 cut(s)	506, 759, 1002, 1063
Hpy8I	GTNNAC	3 cut(s)	246, 592, 1115
HpyAV	CCTTC	5 cut(s)	28, 222, 299, 492, 817
HpyCH4III	ACNGT	2 cut(s)	136, 272
HpyCH4IV	ACGT	6 cut(s)	9, 99, 396, 894, 908, 1117
HpyCH4V	TGCA	7 cut(s)	152, 699, 735, 775, 1030, 1084, 1137
HpyF3I	CTNAG	5 cut(s)	249, 705, 719, 926, 1062
HpySE526I	ACGT	6 cut(s)	9, 99, 396, 894, 908, 1117
Hsp92II	CATG	6 cut(s)	496, 682, 699, 947, 1021, 1141
HspAI	GCGC	1 cut(s)	417
Kpn2I	TCCGGA	1 cut(s)	860
Kzo9I	GATC	5 cut(s)	154, 754, 787, 811, 949
LmnI	GCTCC	1 cut(s)	79
Lsp1109I	GCAGC	2 cut(s)	54, 1096
LweI	GCATC	2 cut(s)	762, 993
MaeI	CTAG	4 cut(s)	275, 291, 296, 453
MaeII	ACGT	6 cut(s)	9, 99, 396, 894, 908, 1117
MaeIII	GTNAC	3 cut(s)	674, 682, 748
MalI	GATC	5 cut(s)	156, 756, 789, 813, 951
MboI	GATC	5 cut(s)	154, 754, 787, 811, 949
MboII	GAAGA	8 cut(s)	375, 383, 412, 638, 751, 849, 1046, 1088
MfeI	CAATTG	2 cut(s)	486, 536
MflI	RGATCY	2 cut(s)	754, 787
MlyI	GAGTC	6 cut(s)	52, 251, 346, 718, 738, 863
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	8 cut(s)	39, 87, 307, 534, 622, 828, 852, 1057
MroI	TCCGGA	1 cut(s)	860
MseI	TTAA	6 cut(s)	95, 219, 281, 390, 795, 971
MslI	CAYNNNNRTG	2 cut(s)	169, 1022
MspA1I	CMGCKG	1 cut(s)	1087
MspI	CCGG	2 cut(s)	41, 861
MspR9I	CCNGG	1 cut(s)	342
MunI	CAATTG	2 cut(s)	486, 536
MvaI	CCWGG	1 cut(s)	342
NdeI	CATATG	1 cut(s)	817
NdeII	GATC	5 cut(s)	154, 754, 787, 811, 949
NlaIII	CATG	6 cut(s)	496, 682, 699, 947, 1021, 1141
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	1 cut(s)	682
NsbI	TGCGCA	1 cut(s)	418
NspI	RCATGY	2 cut(s)	947, 1141
NspV	TTCGAA	1 cut(s)	624
PfeI	GAWTC	3 cut(s)	497, 664, 954
PflMI	CCANNNNNTGG	1 cut(s)	260
PkrI	GCNGC	3 cut(s)	27, 69, 1086
PleI	GAGTC	6 cut(s)	52, 250, 345, 717, 738, 862
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	6 cut(s)	52, 250, 345, 717, 738, 862
Ppu21I	YACGTR	3 cut(s)	397, 895, 909
Psp1406I	AACGTT	1 cut(s)	1117
Psp6I	CCWGG	1 cut(s)	340
PspCI	CACGTG	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	340
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	1 cut(s)	715
PsuI	RGATCY	2 cut(s)	754, 787
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	2 cut(s)	468, 1068
RsaNI	GTAC	2 cut(s)	467, 1067
RseI	CAYNNNNRTG	2 cut(s)	169, 1022
SaqAI	TTAA	6 cut(s)	95, 219, 281, 390, 795, 971
SatI	GCNGC	3 cut(s)	26, 68, 1085
Sau3AI	GATC	5 cut(s)	154, 754, 787, 811, 949
Sau96I	GGNCC	1 cut(s)	715
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	6 cut(s)	52, 251, 346, 718, 738, 863
ScrFI	CCNGG	1 cut(s)	342
SfaNI	GCATC	2 cut(s)	762, 993
SfuI	TTCGAA	1 cut(s)	624
SinI	GGWCC	1 cut(s)	715
SmiMI	CAYNNNNRTG	2 cut(s)	169, 1022
SmlI	CTYRAG	2 cut(s)	1070, 1105
SmoI	CTYRAG	2 cut(s)	1070, 1105
SnaBI	TACGTA	1 cut(s)	909
SpeI	ACTAGT	1 cut(s)	290
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	1 cut(s)	586
SspMI	CTAG	4 cut(s)	275, 291, 296, 453
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	1 cut(s)	332
TaaI	ACNGT	2 cut(s)	136, 272
TaiI	ACGT	6 cut(s)	12, 102, 399, 897, 911, 1120
TaqI	TCGA	6 cut(s)	32, 167, 624, 810, 952, 957
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	497, 664, 954
Tru1I	TTAA	6 cut(s)	95, 219, 281, 390, 795, 971
Tru9I	TTAA	6 cut(s)	95, 219, 281, 390, 795, 971
TscAI	CASTG	2 cut(s)	253, 930
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	2 cut(s)	67, 1084
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	6 cut(s)	318, 420, 425, 561, 684, 909
TspGWI	ACGGA	1 cut(s)	701
TspRI	CASTG	2 cut(s)	253, 930
Van91I	CCANNNNNTGG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	3 cut(s)	325, 511, 916
XbaI	TCTAGA	1 cut(s)	295
XceI	RCATGY	2 cut(s)	947, 1141
XspI	CTAG	4 cut(s)	275, 291, 296, 453
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.