Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

32229791 .. 32231230

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1253500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCTTACGTTCCACCACACAGGCGGCACTCGAAGGAATCAGAGAGGCCATTGCTGACTCCAGAGCTGCTTGCTCCTCAATCCAAGAAAAACTTAATTATCAAGCCATATAATAAGTCTAATGTGGGATGGACTGGAGATACAGTTTATGCAGACCATTCTATATTTAGATGGTGCGCCATCGGTTTGGACGACGAGAACCAGTTTCCATCTTCTGTTAATCTGGAGCCCGTTTCCTTGGAGTCTGCTGATCTGAATTTTGGAAAAAATCGTGTAGTTCTGATCAATACCAGTCTAATTAATGAAGGCGGTGAGGTGAAATGGAATTTGCCAAGGAGCCCTTGGGAATCTATAACAGAAAATGTGCTGGAAGACTTACTTTCGACATTTAAACACGTGAGGAATGAAATGAAGTCTGCAAAGCTCAAAGAAGTACATCCATTTTTGGTTGCCAGAGTGGGGAAAGTACTCTTTCGCAGGAGCGCTTCAGTTAACATGGAATCCATCAGAAAAAAATTGTGTACTGAAATCTTGAAACAACAGAACCGATTATTTTACATAAACACTCCTGTTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

21.98

Weight (kDa)

9.37

Isoelectric Point (pI)

52.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	45 - 191	3.7e-46	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	25, 309
AcsI	RAATTY	2 cut(s)	256, 325
AcuI	CTGAAG	1 cut(s)	471
AcvI	CACGTG	1 cut(s)	397
AfaI	GTAC	3 cut(s)	435, 468, 523
AfeI	AGCGCT	1 cut(s)	484
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	1 cut(s)	394
AgsI	TTSAA	1 cut(s)	535
AluBI	AGCT	2 cut(s)	67, 424
AluI	AGCT	2 cut(s)	67, 424
Aor51HI	AGCGCT	1 cut(s)	484
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	256, 325
AseI	ATTAAT	1 cut(s)	300
AspLEI	GCGC	2 cut(s)	179, 485
AsuHPI	GGTGA	2 cut(s)	323, 328
BanII	GRGCYC	2 cut(s)	231, 341
BbrPI	CACGTG	1 cut(s)	397
BbsI	GAAGAC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	5 cut(s)	123, 165, 188, 217, 512
BclI	TGATCA	1 cut(s)	282
BfoI	RGCGCY	1 cut(s)	486
BisI	GCNGC	2 cut(s)	26, 68
BlsI	GCNGC	2 cut(s)	27, 69
BmcAI	AGTACT	1 cut(s)	468
BmiI	GGNNCC	2 cut(s)	228, 338
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	3 cut(s)	45, 156, 245
BsaAI	YACGTR	1 cut(s)	397
BsaJI	CCNNGG	3 cut(s)	237, 332, 341
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	3 cut(s)	139, 202, 291
Bse3DI	GCAATG	1 cut(s)	50
BseDI	CCNNGG	3 cut(s)	237, 332, 341
BseGI	GGATG	2 cut(s)	134, 436
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMI	GCAATG	1 cut(s)	50
BseNI	ACTGG	3 cut(s)	139, 202, 291
BseRI	GAGGAG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	54
BshFI	GGCC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	459
BsnI	GGCC	1 cut(s)	49
Bsp1286I	GDGCHC	2 cut(s)	231, 341
Bsp143I	GATC	2 cut(s)	250, 282
BspACI	CCGC	2 cut(s)	25, 309
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	2 cut(s)	228, 338
BsrDI	GCAATG	1 cut(s)	50
BsrI	ACTGG	3 cut(s)	139, 202, 291
BssECI	CCNNGG	3 cut(s)	237, 332, 341
BssMI	GATC	2 cut(s)	250, 282
BssT1I	CCWWGG	3 cut(s)	237, 332, 341
Bst4CI	ACNGT	1 cut(s)	145
BstBAI	YACGTR	1 cut(s)	397
BstC8I	GCNNGC	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	134, 436
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	2 cut(s)	179, 485
BstKTI	GATC	2 cut(s)	253, 285
BstMBI	GATC	2 cut(s)	250, 282
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	378
BstXI	CCANNNNNNTGG	1 cut(s)	187
BsuRI	GGCC	1 cut(s)	49
BtsCI	GGATG	2 cut(s)	134, 436
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	2 cut(s)	179, 485
Csp6I	GTAC	3 cut(s)	434, 467, 522
CviAII	CATG	1 cut(s)	496
CviJI	RGCY	7 cut(s)	5, 49, 67, 106, 229, 339, 424
CviKI_1	RGCY	7 cut(s)	5, 49, 67, 106, 229, 339, 424
CviQI	GTAC	3 cut(s)	434, 467, 522
DpnI	GATC	2 cut(s)	252, 284
DpnII	GATC	2 cut(s)	250, 282
DraI	TTTAAA	1 cut(s)	391
Eco130I	CCWWGG	3 cut(s)	237, 332, 341
Eco24I	GRGCYC	2 cut(s)	231, 341
Eco47III	AGCGCT	1 cut(s)	484
Eco57I	CTGAAG	1 cut(s)	471
Eco72I	CACGTG	1 cut(s)	397
EcoT14I	CCWWGG	3 cut(s)	237, 332, 341
EcoT38I	GRGCYC	2 cut(s)	231, 341
ErhI	CCWWGG	3 cut(s)	237, 332, 341
FaeI	CATG	1 cut(s)	499
FaiI	YATR	8 cut(s)	109, 111, 150, 164, 353, 497, 560, 577
FalI	AAGNNNNNCTT	6 cut(s)	77, 109, 325, 357, 363, 395
FatI	CATG	1 cut(s)	495
FbaI	TGATCA	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	26, 68
FokI	GGATG	2 cut(s)	141, 423
FriOI	GRGCYC	2 cut(s)	231, 341
Fsp4HI	GCNGC	2 cut(s)	26, 68
GlaI	GCGC	2 cut(s)	178, 484
GluI	GCNGC	2 cut(s)	26, 68
GsuI	CTGGAG	3 cut(s)	45, 156, 245
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	49
HhaI	GCGC	2 cut(s)	179, 485
Hin1II	CATG	1 cut(s)	499
Hin6I	GCGC	2 cut(s)	177, 483
HinP1I	GCGC	2 cut(s)	177, 483
HincII	GTYRAC	1 cut(s)	493
HindII	GTYRAC	1 cut(s)	493
HinfI	GANTC	5 cut(s)	38, 58, 242, 347, 500
HpaI	GTTAAC	1 cut(s)	493
HphI	GGTGA	2 cut(s)	323, 328
Hpy166II	GTNNAC	2 cut(s)	493, 522
Hpy188I	TCNGA	4 cut(s)	43, 255, 282, 509
Hpy188III	TCNNGA	3 cut(s)	62, 224, 532
Hpy8I	GTNNAC	2 cut(s)	493, 522
Hpy99I	CGWCG	1 cut(s)	197
HpyAV	CCTTC	2 cut(s)	28, 299
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	9, 396
HpyCH4V	TGCA	2 cut(s)	152, 419
HpySE526I	ACGT	2 cut(s)	9, 396
Hsp92II	CATG	1 cut(s)	499
HspAI	GCGC	2 cut(s)	177, 483
Ksp22I	TGATCA	1 cut(s)	282
KspAI	GTTAAC	1 cut(s)	493
Kzo9I	GATC	2 cut(s)	250, 282
LmnI	GCTCC	4 cut(s)	79, 226, 336, 480
LpnPI	CCDG	9 cut(s)	7, 75, 120, 209, 215, 304, 353, 463, 466
Lsp1109I	GCAGC	1 cut(s)	54
MaeII	ACGT	2 cut(s)	9, 396
MalI	GATC	2 cut(s)	252, 284
MboI	GATC	2 cut(s)	250, 282
MboII	GAAGA	2 cut(s)	204, 383
MhlI	GDGCHC	2 cut(s)	231, 341
MluCI	AATT	5 cut(s)	96, 256, 297, 325, 515
MlyI	GAGTC	2 cut(s)	52, 251
MnlI	CCTC	4 cut(s)	39, 87, 307, 393
MseI	TTAA	5 cut(s)	95, 219, 300, 390, 492
NdeII	GATC	2 cut(s)	250, 282
NlaIII	CATG	1 cut(s)	499
NlaIV	GGNNCC	2 cut(s)	228, 338
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PfeI	GAWTC	3 cut(s)	38, 347, 500
PkrI	GCNGC	2 cut(s)	27, 69
PleI	GAGTC	2 cut(s)	52, 250
PmaCI	CACGTG	1 cut(s)	397
PmlI	CACGTG	1 cut(s)	397
PpsI	GAGTC	2 cut(s)	52, 250
Ppu21I	YACGTR	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	300
PspCI	CACGTG	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	228, 338
RsaI	GTAC	3 cut(s)	435, 468, 523
RsaNI	GTAC	3 cut(s)	434, 467, 522
SaqAI	TTAA	5 cut(s)	95, 219, 300, 390, 492
SatI	GCNGC	2 cut(s)	26, 68
Sau3AI	GATC	2 cut(s)	250, 282
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	2 cut(s)	52, 251
SduI	GDGCHC	2 cut(s)	231, 341
SetI	ASST	5 cut(s)	12, 69, 318, 399, 426
Sse9I	AATT	5 cut(s)	96, 256, 297, 325, 515
SsiI	CCGC	2 cut(s)	25, 309
StyI	CCWWGG	3 cut(s)	237, 332, 341
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	12, 399
TaqI	TCGA	2 cut(s)	32, 383
TasI	AATT	5 cut(s)	96, 256, 297, 325, 515
TatI	WGTACW	3 cut(s)	433, 466, 521
TauI	GCSGC	1 cut(s)	28
TfiI	GAWTC	3 cut(s)	38, 347, 500
Tru1I	TTAA	5 cut(s)	95, 219, 300, 390, 492
Tru9I	TTAA	5 cut(s)	95, 219, 300, 390, 492
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	318, 420, 425, 564
VspI	ATTAAT	1 cut(s)	300
XapI	RAATTY	2 cut(s)	256, 325
XcmI	CCANNNNNNNNNTGG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.