Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

32231232 .. 32232845

Gene Structure 1614 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1253600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGTAGTGGACATTTCGTGCACTACTAAGAATCTGGACCTGAGTCTAGTGCTATACACGAGGAGACTCGCAACTAATCTGACTGATGATAAGATGCGAAGCATTTCGGATCTGATTAATTCTGCGATTCTAGTTCCAGACGAGAAGGGTGGATTGAGATGGCCCCAGGGGAAGGAGTCTTCTGGAAATAAATACAAAGTTGTTAGGGTTTGGCACATAATAGCAAATACGTATAGAAATTCATCACTGAGACTGGAAGTAAAACACACTGATCGATTTGATTTTAGAACCTTAACTGGGGGAGCTTCTTGGGGGACAAGTCTGGTACTGGAAAACGTCATGTCAAAGTTACAGGAAGAGAATGTCGAAGCCAGCTCAATTTCTGAGATACTCAAGGAAGATATGCAGTTGATATGGGATAACTTCTTAAGCTGTGAACCTTTTCTGACAGGAAATTGCATTGTAAATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

5.71

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	1 - 142	8.7e-63	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	117
AcsI	RAATTY	1 cut(s)	238
AfaI	GTAC	1 cut(s)	327
AfiI	CCNNNNNNNGG	2 cut(s)	172, 297
AflII	CTTAAG	1 cut(s)	427
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	3 cut(s)	305, 375, 432
AluI	AGCT	3 cut(s)	305, 375, 432
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	2 cut(s)	58, 244
Alw44I	GTGCAC	1 cut(s)	19
AlwI	GGATC	1 cut(s)	117
AoxI	GGCC	1 cut(s)	161
ApaLI	GTGCAC	1 cut(s)	19
ApoI	RAATTY	1 cut(s)	238
AseI	ATTAAT	1 cut(s)	117
Asp700I	GAANNNNTTC	2 cut(s)	103, 441
AspS9I	GGNCC	2 cut(s)	37, 162
AvaII	GGWCC	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	23
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	1 cut(s)	153
BciT130I	CCWGG	1 cut(s)	167
BcoDI	GTCTC	2 cut(s)	58, 244
BfaI	CTAG	2 cut(s)	47, 131
BfrI	CTTAAG	1 cut(s)	427
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	37
BmgT120I	GGNCC	2 cut(s)	37, 162
BmiI	GGNNCC	1 cut(s)	164
BmrFI	CCNGG	1 cut(s)	167
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	84
BmuI	ACTGGG	1 cut(s)	306
BoxI	GACNNNNGTC	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	377
Bsa29I	ATCGAT	1 cut(s)	274
BsaAI	YACGTR	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	165, 166
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 297
Bse1I	ACTGG	3 cut(s)	258, 301, 333
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	274
BseDI	CCNNGG	2 cut(s)	165, 166
BseLI	CCNNNNNNNGG	2 cut(s)	172, 297
BseMII	CTCAG	3 cut(s)	32, 239, 375
BseNI	ACTGG	3 cut(s)	258, 301, 333
BseRI	GAGGAG	1 cut(s)	76
BseSI	GKGCMC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	163
BshVI	ATCGAT	1 cut(s)	274
BsiHKAI	GWGCWC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	172, 297
BsmAI	GTCTC	2 cut(s)	58, 244
BsmFI	GGGAC	1 cut(s)	328
BsnI	GGCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	109, 271
BspANI	GGCC	1 cut(s)	163
BspCNI	CTCAG	3 cut(s)	33, 240, 376
BspDI	ATCGAT	1 cut(s)	274
BspLI	GGNNCC	1 cut(s)	164
BspPI	GGATC	1 cut(s)	117
BspTI	CTTAAG	1 cut(s)	427
BsrI	ACTGG	3 cut(s)	258, 301, 333
BssECI	CCNNGG	2 cut(s)	165, 166
BssMI	GATC	2 cut(s)	109, 271
BssSI	CACGAG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	167
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	427
BstBAI	YACGTR	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	373
BstDEI	CTNAG	4 cut(s)	27, 41, 248, 384
BstKTI	GATC	2 cut(s)	112, 274
BstMAI	GTCTC	2 cut(s)	58, 244
BstMBI	GATC	2 cut(s)	109, 271
BstNI	CCWGG	1 cut(s)	167
BstPAI	GACNNNNGTC	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	165
BstSLI	GKGCMC	1 cut(s)	23
BstSNI	TACGTA	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	163
BsuTUI	ATCGAT	1 cut(s)	274
BtsIMutI	CAGTG	2 cut(s)	245, 267
Cac8I	GCNNGC	1 cut(s)	373
Cfr13I	GGNCC	2 cut(s)	37, 162
ClaI	ATCGAT	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	326
CviAII	CATG	1 cut(s)	340
CviJI	RGCY	5 cut(s)	163, 305, 371, 375, 432
CviKI_1	RGCY	5 cut(s)	163, 305, 371, 375, 432
CviQI	GTAC	1 cut(s)	326
DdeI	CTNAG	4 cut(s)	27, 41, 248, 384
DpnI	GATC	2 cut(s)	111, 273
DpnII	GATC	2 cut(s)	109, 271
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco105I	TACGTA	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	343
FaiI	YATR	6 cut(s)	55, 218, 234, 341, 404, 415
FaqI	GGGAC	1 cut(s)	328
FatI	CATG	1 cut(s)	339
FspBI	CTAG	2 cut(s)	47, 131
HaeIII	GGCC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	343
HinfI	GANTC	5 cut(s)	31, 43, 66, 127, 176
Hpy166II	GTNNAC	3 cut(s)	10, 21, 437
Hpy188I	TCNGA	5 cut(s)	81, 109, 114, 385, 447
Hpy188III	TCNNGA	3 cut(s)	35, 137, 183
Hpy8I	GTNNAC	3 cut(s)	10, 21, 437
HpyAV	CCTTC	2 cut(s)	139, 166
HpyCH4IV	ACGT	2 cut(s)	230, 336
HpyCH4V	TGCA	3 cut(s)	21, 406, 459
HpyF3I	CTNAG	4 cut(s)	27, 41, 248, 384
HpySE526I	ACGT	2 cut(s)	230, 336
Hsp92II	CATG	1 cut(s)	343
Kzo9I	GATC	2 cut(s)	109, 271
LmnI	GCTCC	1 cut(s)	302
LweI	GCATC	1 cut(s)	84
MaeI	CTAG	2 cut(s)	47, 131
MaeII	ACGT	2 cut(s)	230, 336
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	2 cut(s)	111, 273
MboI	GATC	2 cut(s)	109, 271
MboII	GAAGA	3 cut(s)	171, 368, 410
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	118, 238, 378, 454
MlyI	GAGTC	3 cut(s)	52, 60, 185
MnlI	CCTC	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	103, 441
MseI	TTAA	3 cut(s)	117, 293, 428
MspCI	CTTAAG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	109, 271
NlaIII	CATG	1 cut(s)	343
NlaIV	GGNNCC	1 cut(s)	164
PasI	CCCWGGG	1 cut(s)	166
PdmI	GAANNNNTTC	2 cut(s)	103, 441
PfeI	GAWTC	2 cut(s)	31, 127
PleI	GAGTC	3 cut(s)	51, 60, 184
PpsI	GAGTC	3 cut(s)	51, 60, 184
Ppu21I	YACGTR	1 cut(s)	231
PshAI	GACNNNNGTC	1 cut(s)	42
PshBI	ATTAAT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	164
PspPI	GGNCC	2 cut(s)	37, 162
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	327
RsaNI	GTAC	1 cut(s)	326
SaqAI	TTAA	3 cut(s)	117, 293, 428
Sau3AI	GATC	2 cut(s)	109, 271
Sau96I	GGNCC	2 cut(s)	37, 162
SchI	GAGTC	3 cut(s)	52, 60, 185
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	8 cut(s)	42, 233, 293, 307, 339, 377, 434, 442
SfaNI	GCATC	1 cut(s)	84
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	2 cut(s)	392, 427
SmoI	CTYRAG	2 cut(s)	392, 427
SnaBI	TACGTA	1 cut(s)	231
Sse9I	AATT	4 cut(s)	118, 238, 378, 454
SspMI	CTAG	2 cut(s)	47, 131
StyD4I	CCNGG	1 cut(s)	165
TaiI	ACGT	2 cut(s)	233, 339
TaqI	TCGA	2 cut(s)	274, 366
TasI	AATT	4 cut(s)	118, 238, 378, 454
TfiI	GAWTC	2 cut(s)	31, 127
Tru1I	TTAA	3 cut(s)	117, 293, 428
Tru9I	TTAA	3 cut(s)	117, 293, 428
TscAI	CASTG	2 cut(s)	252, 274
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	2 cut(s)	252, 274
Vha464I	CTTAAG	1 cut(s)	427
VneI	GTGCAC	1 cut(s)	19
VpaK11BI	GGWCC	1 cut(s)	37
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	1 cut(s)	238
XmnI	GAANNNNTTC	2 cut(s)	103, 441
XspI	CTAG	2 cut(s)	47, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.