RH3DG014700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0001068
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG014700.1

Sequence Viewer

Length: 1326 bp
ATGCAAGAGACTTTTTTTCATTCGATTCTTCGTCATTTCCGAATTCCGATCGTGCTTGCAAGTCTGGTGCTTTGCCTTCAATTCTCTCTGCTTCTGGGCATAAGTGCTAGTTTTATAATGGCTTACATCCCACCACACAAGCGAAGCTCAAACAAAGCTGAGAGGCCGTTTCCAACTCCAGACAAGCTTGCTCCTTTGTTTAAGAGAAATGTAAATGTAAGGTCATCAAAGTCTAATGATAATTGGACTGGGAAGGCAGTTTGGGCAGACCAAGCCATTTCGAAATGGTGGGCACTTGGTTTGGATGATGACACCCAGTTTCCATCTTCTGTTAATCTTGCACTCATTTCCTTGGAAACCATTGAGAACAAAATCGGAGAGAAGCGTCTAGCTTTAATGAATTCTGGTCTTGCTACTGAAGGTAGTGAGGTGAAATGGGACTTGCCAAAGAGTCCTTGGGTGTATATAGCCGAGAATGTGCTTGAAGACCTAATTGCGTCTTTTGACAATATGAGGATGGAAATGGAGTCCCCAAAGTTAGAAGAACTGAAGCCTAATTTGGTTGCTCGAGTTGGAAAAGTTATCTTCCATAGGAACCCTTCAGTTAACCTGGAATCTCTGAGAGAAAATTTAACTACAAAAATGTTGAAAAATTGGAGGAGATCATTTTACACAAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACAAAGTTGTCCCGAATATTGGAGTTGATTTTGAATCGGAGAAAGATATGTACCTAGTACAGTTGGCTGATTCCACAACACCAGATTCAACTCTCCTCTGCAAATGTAGTGTGAAGGCAGATGGAAAACTACAACTCTACAAGGTCGAACTAAACCAACTGCGTAATATGGTGGTGGATATGTCCGTCCCTAATAAGAATCTGGACCTGAGACTGATGTTAAACATGAAGAGAGTCGTAACAACTCACACTGATGATGAGATGCAAAGCATTAGGGATCTGGTTGATTCTGCAATTACAGATCCAGATGTGAAGGGTGGGTTGAGATGGCCCCTGGAGAAGACATGTTCTGGAAAGTACAACGTTGTTGGGGCTTGGCATGTAAGAGCCAAAGTATATAAAAATCAGTCATTAAGATTTAACGTCAGGCATGCCGATCGATTTGATTTCAGAACCTCAATTGGTGAAGCTTCTTGGGAGATCAGTCTGAGGTTGAAAAAGCTAGTCTCAAAGTTGAAGGAAGAGAAGGTTGAAGTTGGCTCGGTTTCTGAGATACTGGAGGAAAATATGAAGTTCATATATCACAACTTCTTAAGCAGTGAAAGATTTTTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

50.56

Weight (kDa)

8.99

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 81 - 433 1.6e-152 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 116
AclI AACGTT 1 cut(s) 1071
AclWI GGATC 2 cut(s) 993, 1004
AcsI RAATTY 3 cut(s) 42, 400, 628
AcuI CTGAAG 3 cut(s) 438, 569, 585
AfaI GTAC 3 cut(s) 761, 768, 1067
AfiI CCNNNNNNNGG 1 cut(s) 728
AflII CTTAAG 1 cut(s) 1300
AflIII ACRYGT 1 cut(s) 1052
AgsI TTSAA 8 cut(s) 80, 485, 649, 743, 798, 1204, 1225, 1241
AjnI CCWGG 2 cut(s) 609, 1041
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 6 cut(s) 147, 158, 187, 392, 1178, 1210
AluI AGCT 6 cut(s) 147, 158, 187, 392, 1178, 1210
Alw26I GTCTC 3 cut(s) 2, 913, 1219
AlwI GGATC 2 cut(s) 993, 1004
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 2 cut(s) 164, 1037
ApoI RAATTY 3 cut(s) 42, 400, 628
AspS9I GGNCC 2 cut(s) 913, 1038
AsuHPI GGTGA 2 cut(s) 442, 1184
AsuII TTCGAA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 1 cut(s) 913
BaeGI GKGCMC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 492, 1055
BccI CCATC 4 cut(s) 331, 511, 824, 1029
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 1127, 1161
BciT130I CCWGG 2 cut(s) 611, 1043
BcoDI GTCTC 3 cut(s) 2, 913, 1219
BfaI CTAG 4 cut(s) 108, 389, 764, 1211
BfrI CTTAAG 1 cut(s) 1300
Bme1390I CCNGG 2 cut(s) 611, 1043
Bme18I GGWCC 1 cut(s) 913
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 2 cut(s) 913, 1038
BmiI GGNNCC 2 cut(s) 596, 1040
BmrFI CCNGG 2 cut(s) 611, 1043
BmrI ACTGGG 2 cut(s) 258, 310
BmsI GCATC 1 cut(s) 960
BmuI ACTGGG 2 cut(s) 258, 310
BpiI GAAGAC 2 cut(s) 492, 1055
BpmI CTGGAG 3 cut(s) 162, 1064, 1286
Bpu14I TTCGAA 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 1147
BsaJI CCNNGG 3 cut(s) 351, 455, 1041
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse1I ACTGG 3 cut(s) 253, 316, 1269
BseBI CCWGG 2 cut(s) 611, 1043
BseCI ATCGAT 1 cut(s) 1147
BseDI CCNNGG 3 cut(s) 351, 455, 1041
BseGI GGATG 3 cut(s) 126, 310, 522
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMII CTCAG 5 cut(s) 150, 611, 908, 1187, 1248
BseNI ACTGG 3 cut(s) 253, 316, 1269
BseRI GAGGAG 2 cut(s) 673, 794
BseSI GKGCMC 1 cut(s) 295
Bsh1285I CGRYCG 2 cut(s) 51, 1147
BshFI GGCC 2 cut(s) 166, 1039
BshVI ATCGAT 1 cut(s) 1147
BsiEI CGRYCG 2 cut(s) 51, 1147
BsiHKCI CYCGRG 1 cut(s) 567
BslFI GGGAC 4 cut(s) 452, 514, 704, 881
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 3 cut(s) 2, 913, 1219
BsmFI GGGAC 4 cut(s) 452, 514, 704, 881
BsnI GGCC 2 cut(s) 166, 1039
BsoBI CYCGRG 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
BspANI GGCC 2 cut(s) 166, 1039
BspCNI CTCAG 5 cut(s) 151, 612, 909, 1188, 1249
BspDI ATCGAT 1 cut(s) 1147
BspLI GGNNCC 2 cut(s) 596, 1040
BspPI GGATC 2 cut(s) 993, 1004
BspT104I TTCGAA 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 1300
BsrI ACTGG 3 cut(s) 253, 316, 1269
BssECI CCNNGG 3 cut(s) 351, 455, 1041
BssMI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
BssT1I CCWWGG 2 cut(s) 351, 455
Bst2UI CCWGG 2 cut(s) 611, 1043
Bst4CI ACNGT 1 cut(s) 771
Bst6I CTCTTC 2 cut(s) 932, 1224
BstAFI CTTAAG 1 cut(s) 1300
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 57, 189, 1140
BstDEI CTNAG 5 cut(s) 159, 620, 917, 1196, 1257
BstF5I GGATG 3 cut(s) 126, 310, 522
BstKTI GATC 6 cut(s) 51, 665, 988, 1012, 1147, 1191
BstMAI GTCTC 3 cut(s) 2, 913, 1219
BstMBI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
BstMCI CGRYCG 2 cut(s) 51, 1147
BstMWI GCNNNNNNNGC 2 cut(s) 263, 272
BstNI CCWGG 2 cut(s) 611, 1043
BstNSI RCATGY 3 cut(s) 1056, 1091, 1142
BstSCI CCNGG 2 cut(s) 609, 1041
BstSLI GKGCMC 1 cut(s) 295
BstV2I GAAGAC 2 cut(s) 492, 1055
BstX2I RGATCY 2 cut(s) 985, 1009
BstYI RGATCY 2 cut(s) 985, 1009
Bsu15I ATCGAT 1 cut(s) 1147
BsuRI GGCC 2 cut(s) 166, 1039
BsuTUI ATCGAT 1 cut(s) 1147
BtsCI GGATG 3 cut(s) 126, 310, 522
BtsI GCAGTG 1 cut(s) 1312
BtsIMutI CAGTG 2 cut(s) 957, 1312
Cac8I GCNNGC 3 cut(s) 57, 189, 1140
Cfr13I GGNCC 2 cut(s) 913, 1038
ClaI ATCGAT 1 cut(s) 1147
CseI GACGC 2 cut(s) 374, 486
Csp6I GTAC 3 cut(s) 760, 767, 1066
CviAII CATG 5 cut(s) 934, 1053, 1088, 1139, 1323
CviQI GTAC 3 cut(s) 760, 767, 1066
DdeI CTNAG 5 cut(s) 159, 620, 917, 1196, 1257
DpnI GATC 6 cut(s) 50, 664, 987, 1011, 1146, 1190
DpnII GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
Eam1104I CTCTTC 2 cut(s) 932, 1224
EarI CTCTTC 2 cut(s) 932, 1224
Eco130I CCWWGG 2 cut(s) 351, 455
Eco47I GGWCC 1 cut(s) 913
Eco57I CTGAAG 3 cut(s) 438, 569, 585
Eco88I CYCGRG 1 cut(s) 567
EcoRI GAATTC 2 cut(s) 42, 400
EcoRII CCWGG 2 cut(s) 609, 1041
EcoT14I CCWWGG 2 cut(s) 351, 455
ErhI CCWWGG 2 cut(s) 351, 455
FaeI CATG 5 cut(s) 937, 1056, 1091, 1142, 1326
FaqI GGGAC 4 cut(s) 452, 514, 704, 881
FatI CATG 5 cut(s) 933, 1052, 1087, 1138, 1322
FokI GGATG 3 cut(s) 113, 317, 529
FspBI CTAG 4 cut(s) 108, 389, 764, 1211
GsuI CTGGAG 3 cut(s) 162, 1064, 1286
HaeIII GGCC 2 cut(s) 166, 1039
HgaI GACGC 2 cut(s) 374, 486
Hin1II CATG 5 cut(s) 937, 1056, 1091, 1142, 1326
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HindIII AAGCTT 2 cut(s) 185, 1176
HpaI GTTAAC 1 cut(s) 607
HphI GGTGA 2 cut(s) 442, 1184
Hpy166II GTNNAC 2 cut(s) 607, 709
Hpy188I TCNGA 8 cut(s) 41, 48, 377, 621, 748, 1160, 1197, 1258
Hpy188III TCNNGA 5 cut(s) 179, 721, 911, 1013, 1059
Hpy8I GTNNAC 2 cut(s) 607, 709
HpyAV CCTTC 8 cut(s) 86, 247, 413, 609, 817, 1015, 1219, 1228
HpyCH4III ACNGT 1 cut(s) 771
HpyCH4IV ACGT 2 cut(s) 1071, 1131
HpyCH4V TGCA 6 cut(s) 4, 59, 341, 810, 973, 1001
HpyF10VI GCNNNNNNNGC 2 cut(s) 263, 272
HpyF3I CTNAG 5 cut(s) 159, 620, 917, 1196, 1257
HpySE526I ACGT 2 cut(s) 1071, 1131
Hsp92II CATG 5 cut(s) 937, 1056, 1091, 1142, 1326
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
LmnI GCTCC 1 cut(s) 196
LweI GCATC 1 cut(s) 960
MaeI CTAG 4 cut(s) 108, 389, 764, 1211
MaeII ACGT 2 cut(s) 1071, 1131
MaeIII GTNAC 1 cut(s) 946
MalI GATC 6 cut(s) 50, 664, 987, 1011, 1146, 1190
MboI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
MboII GAAGA 9 cut(s) 20, 318, 497, 554, 577, 712, 949, 1060, 1241
MfeI CAATTG 1 cut(s) 1167
MflI RGATCY 2 cut(s) 985, 1009
MhlI GDGCHC 1 cut(s) 295
MlyI GAGTC 3 cut(s) 460, 536, 951
MmeI TCCRAC 2 cut(s) 197, 553
MnlI CCTC 8 cut(s) 156, 421, 507, 651, 815, 1174, 1191, 1261
MseI TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
MslI CAYNNNNRTG 1 cut(s) 960
MspCI CTTAAG 1 cut(s) 1300
MspR9I CCNGG 2 cut(s) 611, 1043
MunI CAATTG 1 cut(s) 1167
MvaI CCWGG 2 cut(s) 611, 1043
MwoI GCNNNNNNNGC 2 cut(s) 263, 272
NdeII GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
NlaIII CATG 5 cut(s) 937, 1056, 1091, 1142, 1326
NlaIV GGNNCC 2 cut(s) 596, 1040
NmeAIII GCCGAG 1 cut(s) 496
NspI RCATGY 3 cut(s) 1056, 1091, 1142
NspV TTCGAA 1 cut(s) 281
PaeI GCATGC 1 cut(s) 1142
PaeR7I CTCGAG 1 cut(s) 567
PciI ACATGT 1 cut(s) 1052
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PfeI GAWTC 7 cut(s) 25, 614, 743, 779, 794, 907, 995
Ple19I CGATCG 2 cut(s) 51, 1147
PleI GAGTC 3 cut(s) 459, 535, 950
PpsI GAGTC 3 cut(s) 459, 535, 950
PscI ACATGT 1 cut(s) 1052
PsiI TTATAA 1 cut(s) 116
Psp1406I AACGTT 1 cut(s) 1071
Psp6I CCWGG 2 cut(s) 609, 1041
PspGI CCWGG 2 cut(s) 609, 1041
PspN4I GGNNCC 2 cut(s) 596, 1040
PspPI GGNCC 2 cut(s) 913, 1038
PspXI VCTCGAGB 1 cut(s) 567
PsuI RGATCY 2 cut(s) 985, 1009
PvuI CGATCG 2 cut(s) 51, 1147
RsaI GTAC 3 cut(s) 761, 768, 1067
RsaNI GTAC 3 cut(s) 760, 767, 1066
RseI CAYNNNNRTG 1 cut(s) 960
SaqAI TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
Sau3AI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
Sau96I GGNCC 2 cut(s) 913, 1038
SchI GAGTC 3 cut(s) 460, 536, 951
ScrFI CCNGG 2 cut(s) 611, 1043
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 1 cut(s) 960
Sfr274I CTCGAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 281
SinI GGWCC 1 cut(s) 913
SlaI CTCGAG 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 960
SmlI CTYRAG 2 cut(s) 567, 1300
SmoI CTYRAG 2 cut(s) 567, 1300
SphI GCATGC 1 cut(s) 1142
SspI AATATT 1 cut(s) 727
SspMI CTAG 4 cut(s) 108, 389, 764, 1211
StyD4I CCNGG 2 cut(s) 609, 1041
StyI CCWWGG 2 cut(s) 351, 455
TaaI ACNGT 1 cut(s) 771
TaiI ACGT 2 cut(s) 1074, 1134
TaqI TCGA 5 cut(s) 23, 281, 568, 855, 1147
TatI WGTACW 2 cut(s) 766, 1065
TfiI GAWTC 7 cut(s) 25, 614, 743, 779, 794, 907, 995
Tru1I TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
Tru9I TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
TscAI CASTG 2 cut(s) 964, 1312
TspDTI ATGAA 5 cut(s) 8, 413, 950, 1273, 1292
TspGWI ACGGA 2 cut(s) 710, 883
TspRI CASTG 2 cut(s) 964, 1312
Vha464I CTTAAG 1 cut(s) 1300
VpaK11BI GGWCC 1 cut(s) 913
XapI RAATTY 3 cut(s) 42, 400, 628
XceI RCATGY 3 cut(s) 1056, 1091, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 567
XspI CTAG 4 cut(s) 108, 389, 764, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.