Rh3CG013000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001068
Physical Location & Seq
Reverse (-)
874538 .. 877181
2644 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG013000.1

Sequence Viewer

Length: 1209 bp
ATGGCTTACATCCCACCACACAAGCGAAACTCAAATGGAGCTGAGAGGCCGTTGCCAACTCCGGACAAGCTTGCTCCTTTATTTAAGAGAAATGTAAATGTAAGGTCATCAAAGTCTAATGATAATTGGACTGGGAAGGTAGTTTGGGCAGACCAAGCCATTTCGAAATGGTGGGCACTTGGTTTGGATGATGACACCCAGTTTCCATCTTCTGTTAATCTTGAACTCATTTCCTTGGAAACCATTGAGCACAAAATCGGAGAAAAGCGTCTAGCTTTAATGAATTCTGGTCTTGCTACTGAAGGTAGTGAGGTGAAATGGGACTTGCCAAAGAGTCCTTGGGTGTATATAGCCGAGAATGTGCTTGAAGACCTAATTGCGTCTTTTGACAATATGAGGAAGGAAATGGAGTCCCCAAAGTTAGAAGAACTGAAGCCTAATTTGGTTGCTCGAGTTGGAAAAGTTCTCTTCCATAGGAGCCCTTCAGTTAACCAGGAATCTCTGAGAGAAAACTTGACTACAAATATGTTGAAAAATTGGAAGAGATCATTTTACACAAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACGAAGTTGTCCCGAATATTGGGGTTGATCTTGAATGGGAGAAAGATATGTACCAAGTAAAGTTGGCTGATTCCACAACACCAGATTCAACTCTCCTCTGCAAATGTAGTGTGAAAGCAGATGGAAAGCTACAACTCTACAAGGTCGAACTAAACCAACTGCGTAATATGGTGGTGGATATGTCCGTCCCTAATAAGAATCTGGACCTGAGACTGATGTTAAACATGAAGAGAGTCGTAACAACTCACACTGATGATGAGATGCAAAGCATTAGGGATCTGGTTGATTCTGCAATTACAGATCCAGATGTGAAGGGTGGGTTGAGATGGCCCCTGGAGAAGACATGTTCTGGAAAGTACAACGTTGTTGGGGCTTGGCATGTAAGAGCCAAAGTATATAAAAATCAGTCATTAAGATTTAACGTCAGGCATGCCGATCGATTTGATTTCAGAACCTCAATTGGTGAAGCTTCTTGGGAGATCAGTCTGAGGTTGAAAAAGCTAGTCTCAAAGTTGAAGGAAGAGAAGGTTGAAGTTGGCTCGGTTTCTGAGATACTGGAGGAAAATATGAAGTTCATATATCACAACTTCTTAAGCAGTGAAAGATTTTTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

402

Amino Acids

46.18

Weight (kDa)

8.49

Isoelectric Point (pI)

37.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 42 - 394 1e-153 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 61
AclI AACGTT 1 cut(s) 954
AclWI GGATC 2 cut(s) 876, 887
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 3 cut(s) 321, 452, 468
AfaI GTAC 2 cut(s) 644, 950
AfiI CCNNNNNNNGG 1 cut(s) 611
AflII CTTAAG 1 cut(s) 1183
AflIII ACRYGT 1 cut(s) 935
AgsI TTSAA 8 cut(s) 224, 368, 532, 626, 681, 1087, 1108, 1124
AjnI CCWGG 2 cut(s) 492, 924
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 6 cut(s) 41, 70, 275, 721, 1061, 1093
AluI AGCT 6 cut(s) 41, 70, 275, 721, 1061, 1093
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 796, 1102
AlwI GGATC 2 cut(s) 876, 887
Ama87I CYCGRG 1 cut(s) 450
Aor13HI TCCGGA 1 cut(s) 61
AoxI GGCC 2 cut(s) 47, 920
ApoI RAATTY 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 796, 921
AsuHPI GGTGA 2 cut(s) 325, 1067
AsuII TTCGAA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 1 cut(s) 796
BaeGI GKGCMC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 482
BbsI GAAGAC 2 cut(s) 375, 938
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 3 cut(s) 214, 707, 912
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 1010, 1044
BciT130I CCWGG 2 cut(s) 494, 926
BcoDI GTCTC 2 cut(s) 796, 1102
BfaI CTAG 2 cut(s) 272, 1094
BfrI CTTAAG 1 cut(s) 1183
Bme1390I CCNGG 2 cut(s) 494, 926
Bme18I GGWCC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 2 cut(s) 796, 921
BmiI GGNNCC 2 cut(s) 479, 923
BmrFI CCNGG 2 cut(s) 494, 926
BmrI ACTGGG 2 cut(s) 141, 193
BmsI GCATC 1 cut(s) 843
BmuI ACTGGG 2 cut(s) 141, 193
BpiI GAAGAC 2 cut(s) 375, 938
BpmI CTGGAG 2 cut(s) 947, 1169
Bpu14I TTCGAA 1 cut(s) 164
Bsa29I ATCGAT 1 cut(s) 1030
BsaJI CCNNGG 3 cut(s) 234, 338, 924
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 3 cut(s) 136, 199, 1152
BseAI TCCGGA 1 cut(s) 61
BseBI CCWGG 2 cut(s) 494, 926
BseCI ATCGAT 1 cut(s) 1030
BseDI CCNNGG 3 cut(s) 234, 338, 924
BseGI GGATG 2 cut(s) 9, 193
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 5 cut(s) 33, 494, 791, 1070, 1131
BseNI ACTGG 3 cut(s) 136, 199, 1152
BseRI GAGGAG 1 cut(s) 677
BseSI GKGCMC 1 cut(s) 178
Bsh1285I CGRYCG 1 cut(s) 1030
BshFI GGCC 2 cut(s) 49, 922
BshVI ATCGAT 1 cut(s) 1030
BsiEI CGRYCG 1 cut(s) 1030
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 450
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 4 cut(s) 335, 397, 587, 764
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 2 cut(s) 796, 1102
BsmFI GGGAC 4 cut(s) 335, 397, 587, 764
BsnI GGCC 2 cut(s) 49, 922
BsoBI CYCGRG 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 178, 252, 482
Bsp13I TCCGGA 1 cut(s) 61
Bsp143I GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
BspANI GGCC 2 cut(s) 49, 922
BspCNI CTCAG 5 cut(s) 34, 495, 792, 1071, 1132
BspDI ATCGAT 1 cut(s) 1030
BspEI TCCGGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 479, 923
BspPI GGATC 2 cut(s) 876, 887
BspT104I TTCGAA 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 1183
BsrI ACTGG 3 cut(s) 136, 199, 1152
BssECI CCNNGG 3 cut(s) 234, 338, 924
BssMI GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
BssT1I CCWWGG 2 cut(s) 234, 338
Bst2UI CCWGG 2 cut(s) 494, 926
Bst6I CTCTTC 4 cut(s) 473, 536, 815, 1107
BstAFI CTTAAG 1 cut(s) 1183
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 72, 1023
BstDEI CTNAG 5 cut(s) 42, 503, 800, 1079, 1140
BstF5I GGATG 2 cut(s) 9, 193
BstKTI GATC 6 cut(s) 548, 622, 871, 895, 1030, 1074
BstMAI GTCTC 2 cut(s) 796, 1102
BstMBI GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
BstMCI CGRYCG 1 cut(s) 1030
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 494, 926
BstNSI RCATGY 3 cut(s) 939, 974, 1025
BstSCI CCNGG 2 cut(s) 492, 924
BstSLI GKGCMC 1 cut(s) 178
BstV2I GAAGAC 2 cut(s) 375, 938
BstX2I RGATCY 2 cut(s) 868, 892
BstYI RGATCY 2 cut(s) 868, 892
Bsu15I ATCGAT 1 cut(s) 1030
BsuRI GGCC 2 cut(s) 49, 922
BsuTUI ATCGAT 1 cut(s) 1030
BtsCI GGATG 2 cut(s) 9, 193
BtsI GCAGTG 1 cut(s) 1195
BtsIMutI CAGTG 2 cut(s) 840, 1195
Cac8I GCNNGC 2 cut(s) 72, 1023
Cfr13I GGNCC 2 cut(s) 796, 921
ClaI ATCGAT 1 cut(s) 1030
CseI GACGC 2 cut(s) 257, 369
Csp6I GTAC 2 cut(s) 643, 949
CviAII CATG 5 cut(s) 817, 936, 971, 1022, 1206
CviQI GTAC 2 cut(s) 643, 949
DdeI CTNAG 5 cut(s) 42, 503, 800, 1079, 1140
DpnI GATC 6 cut(s) 547, 621, 870, 894, 1029, 1073
DpnII GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
Eam1104I CTCTTC 4 cut(s) 473, 536, 815, 1107
EarI CTCTTC 4 cut(s) 473, 536, 815, 1107
Eco130I CCWWGG 2 cut(s) 234, 338
Eco24I GRGCYC 1 cut(s) 482
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 3 cut(s) 321, 452, 468
Eco88I CYCGRG 1 cut(s) 450
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 492, 924
EcoT14I CCWWGG 2 cut(s) 234, 338
EcoT38I GRGCYC 1 cut(s) 482
ErhI CCWWGG 2 cut(s) 234, 338
FaeI CATG 5 cut(s) 820, 939, 974, 1025, 1209
FaqI GGGAC 4 cut(s) 335, 397, 587, 764
FatI CATG 5 cut(s) 816, 935, 970, 1021, 1205
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 482
FspBI CTAG 2 cut(s) 272, 1094
GsuI CTGGAG 2 cut(s) 947, 1169
HaeIII GGCC 2 cut(s) 49, 922
HapII CCGG 1 cut(s) 62
HgaI GACGC 2 cut(s) 257, 369
Hin1II CATG 5 cut(s) 820, 939, 974, 1025, 1209
HincII GTYRAC 1 cut(s) 490
HindII GTYRAC 1 cut(s) 490
HindIII AAGCTT 2 cut(s) 68, 1059
HinfI GANTC 8 cut(s) 334, 410, 497, 662, 677, 790, 825, 878
HpaI GTTAAC 1 cut(s) 490
HpaII CCGG 1 cut(s) 62
HphI GGTGA 2 cut(s) 325, 1067
Hpy166II GTNNAC 2 cut(s) 490, 592
Hpy188I TCNGA 5 cut(s) 260, 504, 1043, 1080, 1141
Hpy188III TCNNGA 7 cut(s) 62, 221, 604, 623, 794, 896, 942
Hpy8I GTNNAC 2 cut(s) 490, 592
HpyAV CCTTC 7 cut(s) 130, 296, 394, 492, 898, 1102, 1111
HpyCH4IV ACGT 2 cut(s) 954, 1014
HpyCH4V TGCA 3 cut(s) 693, 856, 884
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 5 cut(s) 42, 503, 800, 1079, 1140
HpySE526I ACGT 2 cut(s) 954, 1014
Hsp92II CATG 5 cut(s) 820, 939, 974, 1025, 1209
Kpn2I TCCGGA 1 cut(s) 61
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
LmnI GCTCC 3 cut(s) 38, 79, 477
LweI GCATC 1 cut(s) 843
MaeI CTAG 2 cut(s) 272, 1094
MaeII ACGT 2 cut(s) 954, 1014
MaeIII GTNAC 1 cut(s) 829
MalI GATC 6 cut(s) 547, 621, 870, 894, 1029, 1073
MboI GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
MboII GAAGA 9 cut(s) 201, 380, 437, 460, 553, 595, 832, 943, 1124
MfeI CAATTG 1 cut(s) 1050
MflI RGATCY 2 cut(s) 868, 892
MhlI GDGCHC 3 cut(s) 178, 252, 482
MluCI AATT 7 cut(s) 124, 283, 375, 439, 535, 885, 1050
MlyI GAGTC 3 cut(s) 343, 419, 834
MmeI TCCRAC 1 cut(s) 436
MnlI CCTC 7 cut(s) 39, 304, 390, 698, 1057, 1074, 1144
MroI TCCGGA 1 cut(s) 61
MseI TTAA 8 cut(s) 84, 216, 278, 489, 812, 1004, 1011, 1184
MslI CAYNNNNRTG 1 cut(s) 843
MspCI CTTAAG 1 cut(s) 1183
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 494, 926
MunI CAATTG 1 cut(s) 1050
MvaI CCWGG 2 cut(s) 494, 926
MwoI GCNNNNNNNGC 1 cut(s) 155
NdeII GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
NlaIII CATG 5 cut(s) 820, 939, 974, 1025, 1209
NlaIV GGNNCC 2 cut(s) 479, 923
NmeAIII GCCGAG 1 cut(s) 379
NspI RCATGY 3 cut(s) 939, 974, 1025
NspV TTCGAA 1 cut(s) 164
PaeI GCATGC 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 450
PciI ACATGT 1 cut(s) 935
PfeI GAWTC 5 cut(s) 497, 662, 677, 790, 878
Ple19I CGATCG 1 cut(s) 1030
PleI GAGTC 3 cut(s) 342, 418, 833
PpsI GAGTC 3 cut(s) 342, 418, 833
PscI ACATGT 1 cut(s) 935
Psp1406I AACGTT 1 cut(s) 954
Psp6I CCWGG 2 cut(s) 492, 924
PspGI CCWGG 2 cut(s) 492, 924
PspN4I GGNNCC 2 cut(s) 479, 923
PspPI GGNCC 2 cut(s) 796, 921
PspXI VCTCGAGB 1 cut(s) 450
PsuI RGATCY 2 cut(s) 868, 892
PvuI CGATCG 1 cut(s) 1030
RsaI GTAC 2 cut(s) 644, 950
RsaNI GTAC 2 cut(s) 643, 949
RseI CAYNNNNRTG 1 cut(s) 843
SaqAI TTAA 8 cut(s) 84, 216, 278, 489, 812, 1004, 1011, 1184
Sau3AI GATC 6 cut(s) 545, 619, 868, 892, 1027, 1071
Sau96I GGNCC 2 cut(s) 796, 921
SchI GAGTC 3 cut(s) 343, 419, 834
ScrFI CCNGG 2 cut(s) 494, 926
SduI GDGCHC 3 cut(s) 178, 252, 482
SfaNI GCATC 1 cut(s) 843
Sfr274I CTCGAG 1 cut(s) 450
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 796
SlaI CTCGAG 1 cut(s) 450
SmiMI CAYNNNNRTG 1 cut(s) 843
SmlI CTYRAG 2 cut(s) 450, 1183
SmoI CTYRAG 2 cut(s) 450, 1183
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 7 cut(s) 124, 283, 375, 439, 535, 885, 1050
SspI AATATT 1 cut(s) 610
SspMI CTAG 2 cut(s) 272, 1094
StyD4I CCNGG 2 cut(s) 492, 924
StyI CCWWGG 2 cut(s) 234, 338
TaiI ACGT 2 cut(s) 957, 1017
TaqI TCGA 4 cut(s) 164, 451, 738, 1030
TasI AATT 7 cut(s) 124, 283, 375, 439, 535, 885, 1050
TatI WGTACW 1 cut(s) 948
TfiI GAWTC 5 cut(s) 497, 662, 677, 790, 878
Tru1I TTAA 8 cut(s) 84, 216, 278, 489, 812, 1004, 1011, 1184
Tru9I TTAA 8 cut(s) 84, 216, 278, 489, 812, 1004, 1011, 1184
TscAI CASTG 2 cut(s) 847, 1195
TspDTI ATGAA 4 cut(s) 296, 833, 1156, 1175
TspGWI ACGGA 2 cut(s) 593, 766
TspRI CASTG 2 cut(s) 847, 1195
Vha464I CTTAAG 1 cut(s) 1183
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 1 cut(s) 283
XceI RCATGY 3 cut(s) 939, 974, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
XhoI CTCGAG 1 cut(s) 450
XspI CTAG 2 cut(s) 272, 1094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.