Rh3CG013100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001068
Physical Location & Seq
Reverse (-)
879472 .. 882777
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG013100.1

Sequence Viewer

Length: 1326 bp
ATGCAAGAGACTTTTTTTCATTCGATTCTTCGTCATTTCCGAATTCCGATCGTGCTTGCAAGTCTGGTGCTTTGCCTTCAATTCTCTCTGCTTCTGGGCATAAGTGCTAGTTTTATAATGGCTTACATCCCACCACACAAGCGAAGCTCAAACAAAGCTGAGAGGCCGTTTCCAACTCCAGACAAGCTTGCTCCTTTGTTTAAGAGAAATGTAAATGTAAGGTCATCAAAGTCTAATGATAATTGGACTGGGAAGGCAGTTTGGGCAGACCAAGCCATTTCGAAATGGTGGGCACTTGGTTTGGATGATGACACCCAGTTTCCATCTTCTGTTAATCTTGCACTCATTTCCTTGGAAACCATTGAGAACAAAATCGGAGAGAAGCGTCTAGCTTTAATGAATTCTGGTCTTGCTACTGAAGGTAGTGAGGTGAAATGGGACTTGCCAAAGAGTCCTTGGGTGTATATAGCCGAGAATGTGCTTGAAGACCTAATTGCGTCTTTTGACAATATGAGGATGGAAATGGAGTCCCCAAAGTTAGAAGAACTGAAGCCTAATTTGGTTGCTCGAGTTGGAAAAGTTATCTTCCATAGGAACCCTTCAGTTAACCTGGAATCTCTGAGAGAAAATTTAACTACAAAAATGTTGAAAAATTGGAGGAGATCATTTTACACAAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACAAAGTTGTCCCGAATATTGGAGTTGATTTTGAATCGGAGAAAGATATGTACCTAGTACAGTTGGCTGATTCCACAACACCAGATTCAACTCTCCTCTGCAAATGTAGTGTGAAGGCAGATGGAAAACTACAACTCTACAAGGTCGAACTAAAACAAATGCGTAATATGGTGATGGATATATCCATCCCTTATAAGAATCTGGACCTGAGACTGATGTTAAACTTGAAGAGAGTCGTAACAACTCAGACTGATGATGAGATGCAAAGCATTAGGGATCTGGTTGATGCTGCAATTGCAGATCCAGATGTGAAGGGTGGGTTGAGATGGCCCCTGGAGAAGACATCTTCTGGAAAGTACAATGTTGTTGGGACCTGGCATGTAAGAGCCAAAGTATATAAAAATCAGTCATTAAGATTTAAGGTCAGGCATGCCGATCGATTTGATTTTGGAACCTCAATTGGTGAAGCATCTTGGGAGATCAGTCTGAGGTTGAAAAAGCTAGGCTCAAAGTTGAAGGAAGAGAAGGTTGACGTCGACTCGGTTTCTGAGATGCTGGAGGAAAATATGAAGTTCATATATGACAACTTCTTAAGCTGTGAAAGTTTTCTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

441

Amino Acids

50.44

Weight (kDa)

8.75

Isoelectric Point (pI)

37.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 81 - 433 7.3e-152 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 116, 903
AatII GACGTC 1 cut(s) 1245
AccI GTMKAC 1 cut(s) 1245
AclWI GGATC 2 cut(s) 993, 1004
AcsI RAATTY 3 cut(s) 42, 400, 628
AcuI CTGAAG 3 cut(s) 438, 569, 585
AcyI GRCGYC 1 cut(s) 1242
AfaI GTAC 3 cut(s) 761, 768, 1067
AfiI CCNNNNNNNGG 1 cut(s) 728
AflII CTTAAG 1 cut(s) 1300
AgsI TTSAA 8 cut(s) 80, 485, 649, 743, 798, 937, 1204, 1225
AjnI CCWGG 3 cut(s) 609, 1041, 1082
AjuI GAANNNNNNNTTGG 2 cut(s) 542, 574
AluBI AGCT 6 cut(s) 147, 158, 187, 392, 1210, 1305
AluI AGCT 6 cut(s) 147, 158, 187, 392, 1210, 1305
Alw26I GTCTC 2 cut(s) 2, 913
AlwI GGATC 2 cut(s) 993, 1004
Ama87I CYCGRG 1 cut(s) 567
AoxI GGCC 2 cut(s) 164, 1037
ApeKI GCWGC 1 cut(s) 998
ApoI RAATTY 3 cut(s) 42, 400, 628
Asp700I GAANNNNTTC 1 cut(s) 1314
AspS9I GGNCC 3 cut(s) 913, 1038, 1080
AsuHPI GGTGA 3 cut(s) 442, 892, 1184
AsuII TTCGAA 1 cut(s) 281
AvaI CYCGRG 1 cut(s) 567
AvaII GGWCC 2 cut(s) 913, 1080
BaeGI GKGCMC 1 cut(s) 295
BbsI GAAGAC 2 cut(s) 492, 1055
BbvI GCAGC 1 cut(s) 985
BccI CCATC 6 cut(s) 331, 511, 824, 877, 902, 1029
BceAI ACGGC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 1127, 1161
BciT130I CCWGG 3 cut(s) 611, 1043, 1084
BcoDI GTCTC 2 cut(s) 2, 913
BfaI CTAG 4 cut(s) 108, 389, 764, 1211
BfrI CTTAAG 1 cut(s) 1300
BisI GCNGC 1 cut(s) 999
BlsI GCNGC 1 cut(s) 1000
Bme1390I CCNGG 3 cut(s) 611, 1043, 1084
Bme18I GGWCC 2 cut(s) 913, 1080
BmeT110I CYCGRG 1 cut(s) 567
BmgT120I GGNCC 3 cut(s) 913, 1038, 1080
BmiI GGNNCC 4 cut(s) 596, 1040, 1081, 1162
BmrFI CCNGG 3 cut(s) 611, 1043, 1084
BmrI ACTGGG 2 cut(s) 258, 310
BmsI GCATC 4 cut(s) 960, 985, 1187, 1251
BmuI ACTGGG 2 cut(s) 258, 310
BpiI GAAGAC 2 cut(s) 492, 1055
BpmI CTGGAG 3 cut(s) 162, 1064, 1286
Bpu14I TTCGAA 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 1147
BsaHI GRCGYC 1 cut(s) 1242
BsaJI CCNNGG 3 cut(s) 351, 455, 1041
Bsc4I CCNNNNNNNGG 1 cut(s) 728
Bse1I ACTGG 2 cut(s) 253, 316
BseBI CCWGG 3 cut(s) 611, 1043, 1084
BseCI ATCGAT 1 cut(s) 1147
BseDI CCNNGG 3 cut(s) 351, 455, 1041
BseGI GGATG 4 cut(s) 126, 310, 522, 894
BseLI CCNNNNNNNGG 1 cut(s) 728
BseMII CTCAG 6 cut(s) 150, 611, 908, 968, 1187, 1248
BseNI ACTGG 2 cut(s) 253, 316
BseRI GAGGAG 2 cut(s) 673, 794
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 1 cut(s) 985
Bsh1285I CGRYCG 2 cut(s) 51, 1147
BshFI GGCC 2 cut(s) 166, 1039
BshVI ATCGAT 1 cut(s) 1147
BsiEI CGRYCG 2 cut(s) 51, 1147
BsiHKCI CYCGRG 1 cut(s) 567
BslFI GGGAC 4 cut(s) 452, 514, 704, 1093
BslI CCNNNNNNNGG 1 cut(s) 728
BsmAI GTCTC 2 cut(s) 2, 913
BsmFI GGGAC 4 cut(s) 452, 514, 704, 1093
BsnI GGCC 2 cut(s) 166, 1039
BsoBI CYCGRG 1 cut(s) 567
Bsp119I TTCGAA 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 295
Bsp143I GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
BspANI GGCC 2 cut(s) 166, 1039
BspCNI CTCAG 6 cut(s) 151, 612, 909, 967, 1188, 1249
BspDI ATCGAT 1 cut(s) 1147
BspLI GGNNCC 4 cut(s) 596, 1040, 1081, 1162
BspPI GGATC 2 cut(s) 993, 1004
BspT104I TTCGAA 1 cut(s) 281
BspTI CTTAAG 1 cut(s) 1300
BsrI ACTGG 2 cut(s) 253, 316
BssECI CCNNGG 3 cut(s) 351, 455, 1041
BssMI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
BssNI GRCGYC 1 cut(s) 1242
BssT1I CCWWGG 2 cut(s) 351, 455
Bst2UI CCWGG 3 cut(s) 611, 1043, 1084
Bst4CI ACNGT 1 cut(s) 771
Bst6I CTCTTC 2 cut(s) 932, 1224
BstACI GRCGYC 1 cut(s) 1242
BstAFI CTTAAG 1 cut(s) 1300
BstBI TTCGAA 1 cut(s) 281
BstC8I GCNNGC 3 cut(s) 57, 189, 1140
BstDEI CTNAG 6 cut(s) 159, 620, 917, 954, 1196, 1257
BstF5I GGATG 4 cut(s) 126, 310, 522, 894
BstKTI GATC 6 cut(s) 51, 665, 988, 1012, 1147, 1191
BstMAI GTCTC 2 cut(s) 2, 913
BstMBI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
BstMCI CGRYCG 2 cut(s) 51, 1147
BstMWI GCNNNNNNNGC 3 cut(s) 263, 272, 1004
BstNI CCWGG 3 cut(s) 611, 1043, 1084
BstNSI RCATGY 2 cut(s) 1091, 1142
BstSCI CCNGG 3 cut(s) 609, 1041, 1082
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 1 cut(s) 985
BstV2I GAAGAC 2 cut(s) 492, 1055
BstX2I RGATCY 2 cut(s) 985, 1009
BstYI RGATCY 2 cut(s) 985, 1009
Bsu15I ATCGAT 1 cut(s) 1147
BsuRI GGCC 2 cut(s) 166, 1039
BsuTUI ATCGAT 1 cut(s) 1147
BtsCI GGATG 4 cut(s) 126, 310, 522, 894
Cac8I GCNNGC 3 cut(s) 57, 189, 1140
Cfr13I GGNCC 3 cut(s) 913, 1038, 1080
ClaI ATCGAT 1 cut(s) 1147
CseI GACGC 2 cut(s) 374, 486
Csp6I GTAC 3 cut(s) 760, 767, 1066
CviAII CATG 3 cut(s) 1088, 1139, 1323
CviQI GTAC 3 cut(s) 760, 767, 1066
DdeI CTNAG 6 cut(s) 159, 620, 917, 954, 1196, 1257
DpnI GATC 6 cut(s) 50, 664, 987, 1011, 1146, 1190
DpnII GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
Eam1104I CTCTTC 2 cut(s) 932, 1224
EarI CTCTTC 2 cut(s) 932, 1224
Eco130I CCWWGG 2 cut(s) 351, 455
Eco47I GGWCC 2 cut(s) 913, 1080
Eco57I CTGAAG 3 cut(s) 438, 569, 585
Eco88I CYCGRG 1 cut(s) 567
EcoO109I RGGNCCY 1 cut(s) 1080
EcoRI GAATTC 2 cut(s) 42, 400
EcoRII CCWGG 3 cut(s) 609, 1041, 1082
EcoT14I CCWWGG 2 cut(s) 351, 455
ErhI CCWWGG 2 cut(s) 351, 455
FaeI CATG 3 cut(s) 1091, 1142, 1326
FaqI GGGAC 4 cut(s) 452, 514, 704, 1093
FatI CATG 3 cut(s) 1087, 1138, 1322
FblI GTMKAC 1 cut(s) 1245
Fnu4HI GCNGC 1 cut(s) 999
FokI GGATG 4 cut(s) 113, 317, 529, 881
Fsp4HI GCNGC 1 cut(s) 999
FspBI CTAG 4 cut(s) 108, 389, 764, 1211
GluI GCNGC 1 cut(s) 999
GsuI CTGGAG 3 cut(s) 162, 1064, 1286
HaeIII GGCC 2 cut(s) 166, 1039
HgaI GACGC 2 cut(s) 374, 486
Hin1I GRCGYC 1 cut(s) 1242
Hin1II CATG 3 cut(s) 1091, 1142, 1326
HincII GTYRAC 3 cut(s) 607, 1240, 1246
HindII GTYRAC 3 cut(s) 607, 1240, 1246
HindIII AAGCTT 1 cut(s) 185
HpaI GTTAAC 1 cut(s) 607
HphI GGTGA 3 cut(s) 442, 892, 1184
Hpy166II GTNNAC 4 cut(s) 607, 709, 1240, 1246
Hpy188I TCNGA 8 cut(s) 41, 48, 377, 621, 748, 957, 1197, 1258
Hpy188III TCNNGA 5 cut(s) 179, 721, 911, 1013, 1059
Hpy8I GTNNAC 4 cut(s) 607, 709, 1240, 1246
Hpy99I CGWCG 1 cut(s) 1247
HpyAV CCTTC 8 cut(s) 86, 247, 413, 609, 817, 1015, 1219, 1228
HpyCH4III ACNGT 1 cut(s) 771
HpyCH4IV ACGT 1 cut(s) 1242
HpyCH4V TGCA 7 cut(s) 4, 59, 341, 810, 973, 1001, 1007
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 272, 1004
HpyF3I CTNAG 6 cut(s) 159, 620, 917, 954, 1196, 1257
HpySE526I ACGT 1 cut(s) 1242
Hsp92I GRCGYC 1 cut(s) 1242
Hsp92II CATG 3 cut(s) 1091, 1142, 1326
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
LmnI GCTCC 1 cut(s) 196
Lsp1109I GCAGC 1 cut(s) 985
LweI GCATC 4 cut(s) 960, 985, 1187, 1251
MaeI CTAG 4 cut(s) 108, 389, 764, 1211
MaeII ACGT 1 cut(s) 1242
MaeIII GTNAC 1 cut(s) 946
MalI GATC 6 cut(s) 50, 664, 987, 1011, 1146, 1190
MboI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
MfeI CAATTG 2 cut(s) 1002, 1167
MflI RGATCY 2 cut(s) 985, 1009
MhlI GDGCHC 1 cut(s) 295
MlyI GAGTC 4 cut(s) 460, 536, 951, 1241
MmeI TCCRAC 2 cut(s) 197, 553
MnlI CCTC 8 cut(s) 156, 421, 507, 651, 815, 1174, 1191, 1261
MroXI GAANNNNTTC 1 cut(s) 1314
MseI TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
MspCI CTTAAG 1 cut(s) 1300
MspR9I CCNGG 3 cut(s) 611, 1043, 1084
MunI CAATTG 2 cut(s) 1002, 1167
MvaI CCWGG 3 cut(s) 611, 1043, 1084
MwoI GCNNNNNNNGC 3 cut(s) 263, 272, 1004
NdeII GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
NlaIII CATG 3 cut(s) 1091, 1142, 1326
NlaIV GGNNCC 4 cut(s) 596, 1040, 1081, 1162
NmeAIII GCCGAG 1 cut(s) 496
NspI RCATGY 2 cut(s) 1091, 1142
NspV TTCGAA 1 cut(s) 281
PaeI GCATGC 1 cut(s) 1142
PaeR7I CTCGAG 1 cut(s) 567
PcsI WCGNNNNNNNCGW 1 cut(s) 37
PdmI GAANNNNTTC 1 cut(s) 1314
PfeI GAWTC 6 cut(s) 25, 614, 743, 779, 794, 907
PkrI GCNGC 1 cut(s) 1000
Ple19I CGATCG 2 cut(s) 51, 1147
PleI GAGTC 4 cut(s) 459, 535, 950, 1241
PpsI GAGTC 4 cut(s) 459, 535, 950, 1241
PpuMI RGGWCCY 1 cut(s) 1080
PsiI TTATAA 2 cut(s) 116, 903
Psp5II RGGWCCY 1 cut(s) 1080
Psp6I CCWGG 3 cut(s) 609, 1041, 1082
PspGI CCWGG 3 cut(s) 609, 1041, 1082
PspN4I GGNNCC 4 cut(s) 596, 1040, 1081, 1162
PspPI GGNCC 3 cut(s) 913, 1038, 1080
PspPPI RGGWCCY 1 cut(s) 1080
PspXI VCTCGAGB 1 cut(s) 567
PsuI RGATCY 2 cut(s) 985, 1009
PvuI CGATCG 2 cut(s) 51, 1147
RsaI GTAC 3 cut(s) 761, 768, 1067
RsaNI GTAC 3 cut(s) 760, 767, 1066
SalI GTCGAC 1 cut(s) 1244
SaqAI TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
SatI GCNGC 1 cut(s) 999
Sau3AI GATC 6 cut(s) 48, 662, 985, 1009, 1144, 1188
Sau96I GGNCC 3 cut(s) 913, 1038, 1080
SchI GAGTC 4 cut(s) 460, 536, 951, 1241
ScrFI CCNGG 3 cut(s) 611, 1043, 1084
SduI GDGCHC 1 cut(s) 295
SfaNI GCATC 4 cut(s) 960, 985, 1187, 1251
Sfr274I CTCGAG 1 cut(s) 567
SfuI TTCGAA 1 cut(s) 281
SinI GGWCC 2 cut(s) 913, 1080
SlaI CTCGAG 1 cut(s) 567
SmlI CTYRAG 2 cut(s) 567, 1300
SmoI CTYRAG 2 cut(s) 567, 1300
SphI GCATGC 1 cut(s) 1142
SspI AATATT 1 cut(s) 727
SspMI CTAG 4 cut(s) 108, 389, 764, 1211
StyD4I CCNGG 3 cut(s) 609, 1041, 1082
StyI CCWWGG 2 cut(s) 351, 455
TaaI ACNGT 1 cut(s) 771
TaiI ACGT 1 cut(s) 1245
TaqI TCGA 6 cut(s) 23, 281, 568, 855, 1147, 1245
TatI WGTACW 2 cut(s) 766, 1065
TfiI GAWTC 6 cut(s) 25, 614, 743, 779, 794, 907
Tru1I TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
Tru9I TTAA 9 cut(s) 201, 333, 395, 606, 632, 929, 1121, 1128, 1301
TseI GCWGC 1 cut(s) 998
TspDTI ATGAA 4 cut(s) 8, 413, 1273, 1292
TspGWI ACGGA 1 cut(s) 710
Vha464I CTTAAG 1 cut(s) 1300
VpaK11BI GGWCC 2 cut(s) 913, 1080
XapI RAATTY 3 cut(s) 42, 400, 628
XceI RCATGY 2 cut(s) 1091, 1142
XcmI CCANNNNNNNNNTGG 1 cut(s) 453
XhoI CTCGAG 1 cut(s) 567
XmiI GTMKAC 1 cut(s) 1245
XmnI GAANNNNTTC 1 cut(s) 1314
XspI CTAG 4 cut(s) 108, 389, 764, 1211
ZraI GACGTC 1 cut(s) 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.