FvH4_6g01160

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001068
Physical Location & Seq
Reverse (-)
631078 .. 634516
3439 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01160.t1

Sequence Viewer

Length: 1206 bp
ATGGCGTATATACCACCGCACAAGCGAAACTCAAATGAAGCCGAGAGGCCAGTGCTAACTCCAGACAAGCTTGCTCCTTTATTTATGAGAAATGTAAATGTAAGGTCATCTAAGTCTAATAATAAATGGGGTTCAAAGATAATCTATGCAGACCATGCTATATCGAAATGGTGGGCAGTTGGTTTGAATGATGACACCCGGTTCCCCTCTTCTGTTAATCTTAAACCCATTTCCTCGGAAACCATTGAGCACAGAATTGGAGAAAAGCCTCTAGCGTTAAGGAATTCTGATCTTGATGATGGTAATGAGGTACAATTGGACTTGCCAAAGAGCCCATGGGTATATATTGCAAAGAATGTGGTTGAAGACCTACTTGTGTCTTTTGAAAATGTGAAGGAGGAAGTGAAGTCCCCAAAGTTAGAAGGTCTAAAGCCTGCATTGGTTGCTCGAGTTGGAAAAATTCTTTTCCATAGGACCCCTTCAGTTACCCTGGAATCTCTCGGAGAAAATTTGACTACTGCAATGTTGAAAAATTGGAAGAAAACATCATTTTACGCAAATGTTCCTGTTTCGTATACAGAGAAGATTGTAAATGAAGTTGTCCCGAATATTGGAGCTGCTTTTGAATCGGAGAAAGATATATACCAAGTAAAGTTGGCTGATTCAACAAAACCAGACTCAACTCTCTCCTGCAAATGCAGTGTGAAAGATGGAAAGCTACAACTGTACAAGGTTGAACTAAACCAAGTGCGTTTTATGTTGATGGACATGTCCATCCCTAATAAGAATCTGGACCTGAGACTGATGTTAAACATGAAGAGAGTTTTAACAAGTCAGACTGATGATGAGATGCAAAGCATTAGGGATCTGGTTGATTCTGCGATTACAGATCCAGATGTGAAGGGTGGGTTGAGATGGCCCCTGGAGAAGACATCTTCTGGAAAGTACAATGTCATTGGGGTTTGGCATGTAAGAGCTAAAGCATATAAAAATCAGTCATTAAGATTCAAGGTCAGGCATGCCGATCGATTTGATTTCATAACCTCAAGTGGGGAAGCATCTTGGGAGACCAGTCTGAGGTTGAAAAAGGTTGTCTCAGAGTTAAATGAAGAGAAGGTTGATGTCAGCTCGGTTACTGAGATGCTGGAGGAAGATATGAAGTTCATCTGGGACAACTTCTTAACCTGTGAAAGTTTTCTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

402

Amino Acids

45.62

Weight (kDa)

8.18

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 43 - 393 3.4e-149 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 575
AciI CCGC 1 cut(s) 17
AclWI GGATC 2 cut(s) 873, 884
AcsI RAATTY 3 cut(s) 283, 459, 508
AcuI CTGAAG 1 cut(s) 465
AfaI GTAC 3 cut(s) 312, 728, 947
AfiI CCNNNNNNNGG 3 cut(s) 611, 1050, 1077
AflIII ACRYGT 1 cut(s) 768
AjnI CCWGG 2 cut(s) 489, 921
AluBI AGCT 5 cut(s) 70, 617, 718, 977, 1128
AluI AGCT 5 cut(s) 70, 617, 718, 977, 1128
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 3 cut(s) 793, 1061, 1099
AlwI GGATC 2 cut(s) 873, 884
Ama87I CYCGRG 1 cut(s) 447
AoxI GGCC 2 cut(s) 47, 917
ApeKI GCWGC 1 cut(s) 617
ApoI RAATTY 3 cut(s) 283, 459, 508
Asp700I GAANNNNTTC 1 cut(s) 1194
AspS9I GGNCC 3 cut(s) 474, 793, 918
AsuC2I CCSGG 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 447
AvaII GGWCC 2 cut(s) 474, 793
BanII GRGCYC 1 cut(s) 335
BbsI GAAGAC 2 cut(s) 372, 935
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 604
BccI CCATC 5 cut(s) 293, 704, 757, 782, 909
BcgI CGANNNNNNTGC 2 cut(s) 1007, 1041
BciT130I CCWGG 2 cut(s) 491, 923
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 3 cut(s) 793, 1061, 1099
BfaI CTAG 1 cut(s) 272
BisI GCNGC 1 cut(s) 618
BlsI GCNGC 1 cut(s) 619
Bme1390I CCNGG 3 cut(s) 199, 491, 923
Bme18I GGWCC 2 cut(s) 474, 793
BmeT110I CYCGRG 1 cut(s) 447
BmgT120I GGNCC 3 cut(s) 474, 793, 918
BmiI GGNNCC 3 cut(s) 203, 476, 920
BmrFI CCNGG 3 cut(s) 199, 491, 923
BmsI GCATC 3 cut(s) 840, 1067, 1131
BpiI GAAGAC 2 cut(s) 372, 935
BpmI CTGGAG 3 cut(s) 45, 944, 1166
BpuEI CTTGAG 1 cut(s) 1030
BpuMI CCSGG 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 1027
BsaI GGTCTC 1 cut(s) 1061
BsaJI CCNNGG 4 cut(s) 234, 335, 489, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 611, 1050, 1077
Bse1I ACTGG 2 cut(s) 50, 1071
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 2 cut(s) 491, 923
BseCI ATCGAT 1 cut(s) 1027
BseDI CCNNGG 4 cut(s) 234, 335, 489, 921
BseGI GGATG 1 cut(s) 774
BseLI CCNNNNNNNGG 3 cut(s) 611, 1050, 1077
BseMI GCAATG 1 cut(s) 528
BseMII CTCAG 4 cut(s) 788, 1067, 1110, 1128
BseNI ACTGG 2 cut(s) 50, 1071
BseXI GCAGC 1 cut(s) 604
Bsh1285I CGRYCG 1 cut(s) 1027
BshFI GGCC 2 cut(s) 49, 919
BshVI ATCGAT 1 cut(s) 1027
BsiEI CGRYCG 1 cut(s) 1027
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 447
BsiSI CCGG 1 cut(s) 199
BslFI GGGAC 3 cut(s) 394, 587, 1184
BslI CCNNNNNNNGG 3 cut(s) 611, 1050, 1077
BsmAI GTCTC 3 cut(s) 793, 1061, 1099
BsmFI GGGAC 3 cut(s) 394, 587, 1184
BsnI GGCC 2 cut(s) 49, 919
Bso31I GGTCTC 1 cut(s) 1061
BsoBI CYCGRG 1 cut(s) 447
Bsp1286I GDGCHC 2 cut(s) 252, 335
Bsp1407I TGTACA 1 cut(s) 726
Bsp143I GATC 4 cut(s) 289, 865, 889, 1024
Bsp19I CCATGG 1 cut(s) 335
BspACI CCGC 1 cut(s) 17
BspANI GGCC 2 cut(s) 49, 919
BspCNI CTCAG 4 cut(s) 789, 1068, 1109, 1129
BspDI ATCGAT 1 cut(s) 1027
BspLI GGNNCC 3 cut(s) 203, 476, 920
BspPI GGATC 2 cut(s) 873, 884
BspTNI GGTCTC 1 cut(s) 1061
BsrDI GCAATG 1 cut(s) 528
BsrGI TGTACA 1 cut(s) 726
BsrI ACTGG 2 cut(s) 50, 1071
BssECI CCNNGG 4 cut(s) 234, 335, 489, 921
BssMI GATC 4 cut(s) 289, 865, 889, 1024
BssNAI GTATAC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 335
Bst1107I GTATAC 1 cut(s) 576
Bst2UI CCWGG 2 cut(s) 491, 923
Bst4CI ACNGT 1 cut(s) 726
Bst6I CTCTTC 3 cut(s) 214, 812, 1104
BstAPI GCANNNNNTGC 2 cut(s) 155, 443
BstAUI TGTACA 1 cut(s) 726
BstC8I GCNNGC 3 cut(s) 72, 435, 1020
BstDEI CTNAG 5 cut(s) 111, 797, 1076, 1096, 1137
BstDSI CCRYGG 1 cut(s) 335
BstF5I GGATG 1 cut(s) 774
BstKTI GATC 4 cut(s) 292, 868, 892, 1027
BstMAI GTCTC 3 cut(s) 793, 1061, 1099
BstMBI GATC 4 cut(s) 289, 865, 889, 1024
BstMCI CGRYCG 1 cut(s) 1027
BstMWI GCNNNNNNNGC 2 cut(s) 155, 443
BstNI CCWGG 2 cut(s) 491, 923
BstNSI RCATGY 3 cut(s) 772, 971, 1022
BstSCI CCNGG 3 cut(s) 197, 489, 921
BstV1I GCAGC 1 cut(s) 604
BstV2I GAAGAC 2 cut(s) 372, 935
BstX2I RGATCY 2 cut(s) 865, 889
BstYI RGATCY 2 cut(s) 865, 889
BstZ17I GTATAC 1 cut(s) 576
Bsu15I ATCGAT 1 cut(s) 1027
BsuRI GGCC 2 cut(s) 49, 919
BsuTUI ATCGAT 1 cut(s) 1027
BtgI CCRYGG 1 cut(s) 335
BtsCI GGATG 1 cut(s) 774
BtsI GCAGTG 1 cut(s) 706
BtsIMutI CAGTG 2 cut(s) 57, 706
Cac8I GCNNGC 3 cut(s) 72, 435, 1020
Cfr13I GGNCC 3 cut(s) 474, 793, 918
ClaI ATCGAT 1 cut(s) 1027
Csp6I GTAC 3 cut(s) 311, 727, 946
CspCI CAANNNNNGTGG 2 cut(s) 339, 374
CviAII CATG 7 cut(s) 155, 336, 769, 814, 968, 1019, 1203
CviQI GTAC 3 cut(s) 311, 727, 946
DdeI CTNAG 5 cut(s) 111, 797, 1076, 1096, 1137
DpnI GATC 4 cut(s) 291, 867, 891, 1026
DpnII GATC 4 cut(s) 289, 865, 889, 1024
Eam1104I CTCTTC 3 cut(s) 214, 812, 1104
EarI CTCTTC 3 cut(s) 214, 812, 1104
Eco130I CCWWGG 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 1061
Eco47I GGWCC 2 cut(s) 474, 793
Eco57I CTGAAG 1 cut(s) 465
Eco88I CYCGRG 1 cut(s) 447
EcoO109I RGGNCCY 1 cut(s) 474
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 489, 921
EcoT14I CCWWGG 1 cut(s) 335
EcoT38I GRGCYC 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
FaeI CATG 7 cut(s) 158, 339, 772, 817, 971, 1022, 1206
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 3 cut(s) 394, 587, 1184
FatI CATG 7 cut(s) 154, 335, 768, 813, 967, 1018, 1202
FblI GTMKAC 1 cut(s) 575
Fnu4HI GCNGC 1 cut(s) 618
FokI GGATG 1 cut(s) 761
FriOI GRGCYC 1 cut(s) 335
Fsp4HI GCNGC 1 cut(s) 618
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 618
GsuI CTGGAG 3 cut(s) 45, 944, 1166
HaeIII GGCC 2 cut(s) 49, 919
HapII CCGG 1 cut(s) 199
Hin1II CATG 7 cut(s) 158, 339, 772, 817, 971, 1022, 1206
HindIII AAGCTT 1 cut(s) 68
HinfI GANTC 7 cut(s) 494, 626, 662, 677, 787, 875, 1005
HpaII CCGG 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 576
Hpy188I TCNGA 7 cut(s) 238, 289, 503, 631, 837, 1077, 1099
Hpy188III TCNNGA 6 cut(s) 62, 293, 604, 791, 893, 939
Hpy8I GTNNAC 1 cut(s) 576
HpyAV CCTTC 5 cut(s) 388, 416, 489, 895, 1108
HpyCH4III ACNGT 1 cut(s) 726
HpyCH4V TGCA 7 cut(s) 149, 350, 437, 521, 693, 699, 853
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 443
HpyF3I CTNAG 5 cut(s) 111, 797, 1076, 1096, 1137
Hsp92II CATG 7 cut(s) 158, 339, 772, 817, 971, 1022, 1206
Kzo9I GATC 4 cut(s) 289, 865, 889, 1024
LmnI GCTCC 2 cut(s) 79, 614
Lsp1109I GCAGC 1 cut(s) 604
LweI GCATC 3 cut(s) 840, 1067, 1131
MaeI CTAG 1 cut(s) 272
MaeIII GTNAC 2 cut(s) 484, 1132
MalI GATC 4 cut(s) 291, 867, 891, 1026
MboI GATC 4 cut(s) 289, 865, 889, 1024
MboII GAAGA 9 cut(s) 201, 377, 550, 595, 829, 927, 940, 1121, 1163
MfeI CAATTG 1 cut(s) 314
MflI RGATCY 2 cut(s) 865, 889
MhlI GDGCHC 2 cut(s) 252, 335
MluCI AATT 6 cut(s) 255, 283, 314, 459, 508, 532
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 433
MnlI CCTC 9 cut(s) 39, 217, 244, 279, 301, 391, 1054, 1071, 1141
MroXI GAANNNNTTC 1 cut(s) 1194
MseI TTAA 8 cut(s) 216, 222, 278, 809, 827, 1001, 1103, 1181
MspI CCGG 1 cut(s) 199
MspR9I CCNGG 3 cut(s) 199, 491, 923
MunI CAATTG 1 cut(s) 314
MvaI CCWGG 2 cut(s) 491, 923
MwoI GCNNNNNNNGC 2 cut(s) 155, 443
NciI CCSGG 1 cut(s) 199
NcoI CCATGG 1 cut(s) 335
NdeII GATC 4 cut(s) 289, 865, 889, 1024
NlaIII CATG 7 cut(s) 158, 339, 772, 817, 971, 1022, 1206
NlaIV GGNNCC 3 cut(s) 203, 476, 920
NmeAIII GCCGAG 1 cut(s) 67
NspI RCATGY 3 cut(s) 772, 971, 1022
PaeI GCATGC 1 cut(s) 1022
PaeR7I CTCGAG 1 cut(s) 447
PciI ACATGT 1 cut(s) 768
PdmI GAANNNNTTC 1 cut(s) 1194
PfeI GAWTC 6 cut(s) 494, 626, 662, 787, 875, 1005
PkrI GCNGC 1 cut(s) 619
Ple19I CGATCG 1 cut(s) 1027
PleI GAGTC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 671
PpuMI RGGWCCY 1 cut(s) 474
PscI ACATGT 1 cut(s) 768
Psp5II RGGWCCY 1 cut(s) 474
Psp6I CCWGG 2 cut(s) 489, 921
PspGI CCWGG 2 cut(s) 489, 921
PspN4I GGNNCC 3 cut(s) 203, 476, 920
PspPI GGNCC 3 cut(s) 474, 793, 918
PspPPI RGGWCCY 1 cut(s) 474
PspXI VCTCGAGB 1 cut(s) 447
PsuI RGATCY 2 cut(s) 865, 889
PvuI CGATCG 1 cut(s) 1027
RsaI GTAC 3 cut(s) 312, 728, 947
RsaNI GTAC 3 cut(s) 311, 727, 946
SaqAI TTAA 8 cut(s) 216, 222, 278, 809, 827, 1001, 1103, 1181
SatI GCNGC 1 cut(s) 618
Sau3AI GATC 4 cut(s) 289, 865, 889, 1024
Sau96I GGNCC 3 cut(s) 474, 793, 918
SchI GAGTC 1 cut(s) 671
ScrFI CCNGG 3 cut(s) 199, 491, 923
SduI GDGCHC 2 cut(s) 252, 335
SfaNI GCATC 3 cut(s) 840, 1067, 1131
Sfr274I CTCGAG 1 cut(s) 447
SinI GGWCC 2 cut(s) 474, 793
SlaI CTCGAG 1 cut(s) 447
SmlI CTYRAG 2 cut(s) 447, 1045
SmoI CTYRAG 2 cut(s) 447, 1045
SphI GCATGC 1 cut(s) 1022
Sse9I AATT 6 cut(s) 255, 283, 314, 459, 508, 532
SsiI CCGC 1 cut(s) 17
SspI AATATT 1 cut(s) 610
SspMI CTAG 1 cut(s) 272
StyD4I CCNGG 3 cut(s) 197, 489, 921
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 726
TaqI TCGA 3 cut(s) 164, 448, 1027
TasI AATT 6 cut(s) 255, 283, 314, 459, 508, 532
TatI WGTACW 2 cut(s) 726, 945
TfiI GAWTC 6 cut(s) 494, 626, 662, 787, 875, 1005
Tru1I TTAA 8 cut(s) 216, 222, 278, 809, 827, 1001, 1103, 1181
Tru9I TTAA 8 cut(s) 216, 222, 278, 809, 827, 1001, 1103, 1181
TscAI CASTG 2 cut(s) 57, 706
TseI GCWGC 1 cut(s) 617
TspDTI ATGAA 7 cut(s) 51, 609, 830, 1027, 1122, 1153, 1172
TspRI CASTG 2 cut(s) 57, 706
VpaK11BI GGWCC 2 cut(s) 474, 793
XapI RAATTY 3 cut(s) 283, 459, 508
XceI RCATGY 3 cut(s) 772, 971, 1022
XcmI CCANNNNNNNNNTGG 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 447
XmiI GTMKAC 1 cut(s) 575
XmnI GAANNNNTTC 1 cut(s) 1194
XspI CTAG 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.