Rmu_co8209414.1_g000001

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8209414.1
OG0001068
Physical Location & Seq
Forward (+)
1 .. 676
676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8209414.1_g000001.1.cds

Sequence Viewer

Length: 366 bp
gatgatgagacgcaaagcattagggatctggttgatgctgcaattgcagatccagatgtgaagggtgggttgagatggcccctggagaagacatcttctggaaagtacaatgttgttggggcctggcatgtaagagccaaagtatataaaaatcagtcattaagatttaaggtcaggcatgccgatcgatttgattttggaacctcaattggtgaagcatcttgggagatcagtctgaggttgaaaaagctaggctcaaagttgaaggaagagaaggttgacgtcgactcggtttctgagatgctggaggaaaatatgaagttcatatatgacaacttcttaagctgtgaaagttttctcacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.83

Weight (kDa)

5.73

Isoelectric Point (pI)

29.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 285
AccI GTMKAC 1 cut(s) 285
AclWI GGATC 2 cut(s) 33, 44
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 107
AflII CTTAAG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 244, 265
AjnI CCWGG 2 cut(s) 81, 122
AluBI AGCT 2 cut(s) 250, 345
AluI AGCT 2 cut(s) 250, 345
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 2 cut(s) 33, 44
AoxI GGCC 2 cut(s) 77, 120
ApeKI GCWGC 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 78, 120
AsuHPI GGTGA 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 95
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 69
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BciT130I CCWGG 2 cut(s) 83, 124
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 251
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 83, 124
BmgT120I GGNCC 2 cut(s) 78, 120
BmiI GGNNCC 3 cut(s) 80, 121, 202
BmrFI CCNGG 2 cut(s) 83, 124
BmsI GCATC 3 cut(s) 25, 227, 291
BpiI GAAGAC 1 cut(s) 95
BpmI CTGGAG 2 cut(s) 104, 326
Bsa29I ATCGAT 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 81
BseBI CCWGG 2 cut(s) 83, 124
BseCI ATCGAT 1 cut(s) 187
BseDI CCNNGG 1 cut(s) 81
BseMII CTCAG 2 cut(s) 227, 288
BseXI GCAGC 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 79, 122
BshVI ATCGAT 1 cut(s) 187
BsiEI CGRYCG 1 cut(s) 187
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 2 cut(s) 79, 122
Bsp143I GATC 4 cut(s) 25, 49, 184, 228
BspANI GGCC 2 cut(s) 79, 122
BspCNI CTCAG 2 cut(s) 228, 289
BspDI ATCGAT 1 cut(s) 187
BspLI GGNNCC 3 cut(s) 80, 121, 202
BspPI GGATC 2 cut(s) 33, 44
BspTI CTTAAG 1 cut(s) 340
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 4 cut(s) 25, 49, 184, 228
BssNI GRCGYC 1 cut(s) 282
Bst2UI CCWGG 2 cut(s) 83, 124
Bst6I CTCTTC 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 282
BstAFI CTTAAG 1 cut(s) 340
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 236, 297
BstKTI GATC 4 cut(s) 28, 52, 187, 231
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 4 cut(s) 25, 49, 184, 228
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstNI CCWGG 2 cut(s) 83, 124
BstNSI RCATGY 2 cut(s) 131, 182
BstSCI CCNGG 2 cut(s) 81, 122
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 95
BstX2I RGATCY 2 cut(s) 25, 49
BstYI RGATCY 2 cut(s) 25, 49
Bsu15I ATCGAT 1 cut(s) 187
BsuRI GGCC 2 cut(s) 79, 122
BsuTUI ATCGAT 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 78, 120
ClaI ATCGAT 1 cut(s) 187
CseI GACGC 1 cut(s) 19
Csp6I GTAC 1 cut(s) 106
CviAII CATG 3 cut(s) 128, 179, 363
CviJI RGCY 6 cut(s) 79, 122, 137, 250, 255, 345
CviKI_1 RGCY 6 cut(s) 79, 122, 137, 250, 255, 345
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 2 cut(s) 236, 297
DpnI GATC 4 cut(s) 27, 51, 186, 230
DpnII GATC 4 cut(s) 25, 49, 184, 228
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EcoO109I RGGNCCY 1 cut(s) 120
EcoRII CCWGG 2 cut(s) 81, 122
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 3 cut(s) 131, 182, 366
FaiI YATR 9 cut(s) 129, 145, 147, 180, 317, 326, 328, 330, 364
FatI CATG 3 cut(s) 127, 178, 362
FblI GTMKAC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 39
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 251
GluI GCNGC 1 cut(s) 39
GsuI CTGGAG 2 cut(s) 104, 326
HaeIII GGCC 2 cut(s) 79, 122
HgaI GACGC 1 cut(s) 19
Hin1I GRCGYC 1 cut(s) 282
Hin1II CATG 3 cut(s) 131, 182, 366
HincII GTYRAC 2 cut(s) 280, 286
HindII GTYRAC 2 cut(s) 280, 286
HinfI GANTC 1 cut(s) 287
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 2 cut(s) 280, 286
Hpy188I TCNGA 2 cut(s) 237, 298
Hpy188III TCNNGA 2 cut(s) 53, 99
Hpy8I GTNNAC 2 cut(s) 280, 286
Hpy99I CGWCG 1 cut(s) 287
HpyAV CCTTC 3 cut(s) 55, 259, 268
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 2 cut(s) 41, 47
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpyF3I CTNAG 2 cut(s) 236, 297
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 282
Hsp92II CATG 3 cut(s) 131, 182, 366
Kzo9I GATC 4 cut(s) 25, 49, 184, 228
LpnPI CCDG 9 cut(s) 14, 66, 68, 84, 95, 109, 136, 160, 290
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 3 cut(s) 25, 227, 291
MaeI CTAG 1 cut(s) 251
MaeII ACGT 1 cut(s) 282
MalI GATC 4 cut(s) 27, 51, 186, 230
MboI GATC 4 cut(s) 25, 49, 184, 228
MboII GAAGA 3 cut(s) 87, 100, 281
MfeI CAATTG 2 cut(s) 42, 207
MflI RGATCY 2 cut(s) 25, 49
MluCI AATT 2 cut(s) 42, 207
MlyI GAGTC 1 cut(s) 281
MnlI CCTC 3 cut(s) 214, 231, 301
MroXI GAANNNNTTC 1 cut(s) 354
MseI TTAA 3 cut(s) 161, 168, 341
MspCI CTTAAG 1 cut(s) 340
MspR9I CCNGG 2 cut(s) 83, 124
MunI CAATTG 2 cut(s) 42, 207
MvaI CCWGG 2 cut(s) 83, 124
MwoI GCNNNNNNNGC 1 cut(s) 44
NdeII GATC 4 cut(s) 25, 49, 184, 228
NlaIII CATG 3 cut(s) 131, 182, 366
NlaIV GGNNCC 3 cut(s) 80, 121, 202
NspI RCATGY 2 cut(s) 131, 182
PaeI GCATGC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 354
PkrI GCNGC 1 cut(s) 40
Ple19I CGATCG 1 cut(s) 187
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
Psp6I CCWGG 2 cut(s) 81, 122
PspGI CCWGG 2 cut(s) 81, 122
PspN4I GGNNCC 3 cut(s) 80, 121, 202
PspPI GGNCC 2 cut(s) 78, 120
PsuI RGATCY 2 cut(s) 25, 49
PvuI CGATCG 1 cut(s) 187
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SalI GTCGAC 1 cut(s) 284
SaqAI TTAA 3 cut(s) 161, 168, 341
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 4 cut(s) 25, 49, 184, 228
Sau96I GGNCC 2 cut(s) 78, 120
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 2 cut(s) 83, 124
SetI ASST 7 cut(s) 174, 206, 242, 252, 279, 285, 347
SfaNI GCATC 3 cut(s) 25, 227, 291
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SphI GCATGC 1 cut(s) 182
Sse9I AATT 2 cut(s) 42, 207
SspMI CTAG 1 cut(s) 251
StyD4I CCNGG 2 cut(s) 81, 122
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 187, 285
TasI AATT 2 cut(s) 42, 207
TatI WGTACW 1 cut(s) 105
Tru1I TTAA 3 cut(s) 161, 168, 341
Tru9I TTAA 3 cut(s) 161, 168, 341
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 313, 332
Vha464I CTTAAG 1 cut(s) 340
XceI RCATGY 2 cut(s) 131, 182
XmiI GTMKAC 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 354
XspI CTAG 1 cut(s) 251
ZraI GACGTC 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.