pycom12g23280

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0001068
Physical Location & Seq
Forward (+)
23933679 .. 23935392
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g23280.3

Sequence Viewer

Length: 321 bp
ATGCAACGGTTGAGATGGCCCCTAGGGAAGGCGTTTTCTGGATGCCGGTATAATGTCGTTGGAACATTTACCACTACTTATGAAAATCCATCTCTGAAACTAAAGTTAAGGCATGCGAATCGCTTCGATTTTGCCGCCTCAGCTGGTGAAACTGGTTGGGAGGTTAGGCTGTTTCTGAAAATGCTCGTTTCAAAGTTACAGGAAGAGAATGTTGAAGTCGGCTTGATTTGTGATATGCTGCAGGAAAATGTGAAGTTGATATGGGACAACTTCTTATTAACATTATACTTCCAGCCAGCATTGTCACAGAACAGTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.25

Weight (kDa)

8.66

Isoelectric Point (pI)

34.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AfaI GTAC 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 28
AgsI TTSAA 2 cut(s) 192, 215
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AoxI GGCC 1 cut(s) 17
ApeKI GCWGC 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 122
AspA2I CCTAGG 1 cut(s) 22
AspS9I GGNCC 1 cut(s) 18
AsuHPI GGTGA 1 cut(s) 158
AvrII CCTAGG 1 cut(s) 22
BbvCI CCTCAGC 1 cut(s) 139
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 9, 97
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BfaI CTAG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 239
BisI GCNGC 2 cut(s) 135, 239
BlnI CCTAGG 1 cut(s) 22
BlsI GCNGC 2 cut(s) 136, 240
BmgT120I GGNCC 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 20
BmsI GCATC 1 cut(s) 32
Bpu10I CCTNAGC 1 cut(s) 139
BsaAI YACGTR 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 22
BseGI GGATG 1 cut(s) 47
BseLI CCNNNNNNNGG 1 cut(s) 28
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 225
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 28
BsmFI GGGAC 1 cut(s) 278
BsnI GGCC 1 cut(s) 19
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 20
BspMAI CTGCAG 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 45
BssECI CCNNGG 1 cut(s) 22
BssT1I CCWWGG 1 cut(s) 22
Bst4CI ACNGT 2 cut(s) 9, 314
Bst6I CTCTTC 1 cut(s) 198
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 2 cut(s) 114, 297
BstDEI CTNAG 1 cut(s) 139
BstENI CCTNNNNNAGG 1 cut(s) 26
BstF5I GGATG 1 cut(s) 47
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 239
BstSNI TACGTA 1 cut(s) 318
BstV1I GCAGC 1 cut(s) 225
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 1 cut(s) 47
Cac8I GCNNGC 2 cut(s) 114, 297
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 315
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 19, 143, 169, 222, 295
CviKI_1 RGCY 5 cut(s) 19, 143, 169, 222, 295
CviQI GTAC 1 cut(s) 315
DdeI CTNAG 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Eco105I TACGTA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 22
EcoNI CCTNNNNNAGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 22
ErhI CCWWGG 1 cut(s) 22
FaeI CATG 1 cut(s) 116
FaiI YATR 6 cut(s) 51, 81, 114, 236, 262, 286
FaqI GGGAC 1 cut(s) 278
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 135, 239
FokI GGATG 1 cut(s) 54
Fsp4HI GCNGC 2 cut(s) 135, 239
FspBI CTAG 1 cut(s) 23
GluI GCNGC 2 cut(s) 135, 239
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 116
HinfI GANTC 1 cut(s) 118
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 158
Hpy188I TCNGA 2 cut(s) 96, 177
Hpy188III TCNNGA 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 9, 314
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 2 cut(s) 4, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 1 cut(s) 116
LpnPI CCDG 8 cut(s) 24, 59, 129, 138, 185, 227, 305, 309
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 32
MaeI CTAG 1 cut(s) 23
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 2 cut(s) 195, 303
MboII GAAGA 1 cut(s) 215
MmeI TCCRAC 1 cut(s) 40
MnlI CCTC 2 cut(s) 148, 154
MroXI GAANNNNTTC 1 cut(s) 122
MseI TTAA 2 cut(s) 107, 278
MspA1I CMGCKG 1 cut(s) 143
MspI CCGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 20
NmuCI GTSAC 1 cut(s) 303
NspI RCATGY 1 cut(s) 116
PaeI GCATGC 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 122
PfeI GAWTC 1 cut(s) 118
PkrI GCNGC 2 cut(s) 136, 240
Ppu21I YACGTR 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 20
PspPI GGNCC 1 cut(s) 18
PstI CTGCAG 1 cut(s) 243
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 316
RsaNI GTAC 1 cut(s) 315
SaqAI TTAA 2 cut(s) 107, 278
SatI GCNGC 2 cut(s) 135, 239
Sau96I GGNCC 1 cut(s) 18
SetI ASST 3 cut(s) 145, 165, 320
SfaNI GCATC 1 cut(s) 32
SfcI CTRYAG 1 cut(s) 239
SnaBI TACGTA 1 cut(s) 318
SphI GCATGC 1 cut(s) 116
SsiI CCGC 1 cut(s) 135
SspMI CTAG 1 cut(s) 23
StyI CCWWGG 1 cut(s) 22
TaaI ACNGT 2 cut(s) 9, 314
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 126
TauI GCSGC 1 cut(s) 137
TfiI GAWTC 1 cut(s) 118
Tru1I TTAA 2 cut(s) 107, 278
Tru9I TTAA 2 cut(s) 107, 278
TseFI GTSAC 1 cut(s) 303
TseI GCWGC 1 cut(s) 238
Tsp45I GTSAC 1 cut(s) 303
TspDTI ATGAA 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 26
XceI RCATGY 1 cut(s) 116
XmaJI CCTAGG 1 cut(s) 22
XmnI GAANNNNTTC 1 cut(s) 122
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.