Rroxscaffold_6G00426980

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001068
Physical Location & Seq
Reverse (-)
47588833 .. 47592531
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426980.1

Sequence Viewer

Length: 1209 bp
ATGGCTTACATCCCTCCACACAAGCGAAGCTCAAATGAAGCTGAGAGGCCGTTTCCAACTCCAGACAAGCTTGCTCCTTTGTTTAAGAGAAATGTAAATGTAAGGTCATCAAAGTCTAATGATAATTGGACTGGGAAGGTAGTTTGGGCAGACCAAGCCATTTCGAAATGGTGGGCACTTGGTTTAGATGATGACACCCAGTTTCCATCTTCTGTTAATCTTGAACTCATTTCCTTGGAAACCATTGAGCACAAAATCGGAGAGAAGCGTCTAGCTTTAATGAATTCTGATCTTGCTACTGAAGGTAGTGAGGTGAAATGGGACTTGCCAAAGAGTCCCTGGGTGTATATAGCAGAGAATGTGCTTGAAGACCTACTTGCGTCTTTTGAAAATATGAGGAAGGAAATGGAGTCCCCAAAGTTAGAAGAACTAAAGCCTACTTTGGTTGCTCGAGTTGGAAAAGTTCTCTTCCATAGGAACCCTTCAGTTAACCTGGAATCTCTGACAGAAAATTTAACTACAAAAATGTTGAAAAATTGGAGGAGATCATTTTACACAAATGTTCCTGTTTCCTATACGGAGAAGATTGTAAACAAAGTTGTCCCGAATATTGGAGTTGATTTTGAATCAGAGAAAGATATGTACCTAGTAAAGTTGGCTGATTCCACAACACCAGGTTCAACTCTCCTCTGCAAATGTAGTGTGAAAGCAGATGGAAAACTACAACTCTACAAGGTCGAACTAAACCAAATGCGTAATATGGTGATGGATATATCGATCCCTAATAAGAATCTGGACCTGAGACTGATGTTAAACATGAAGAGAGTCGTAACAACTCAGACTGATGATGAGACGCAAAGCATTAGGGATCTGGTTGATGCTGCAATTGCAGATCCAGATGTGAAGGGTGGGTTGAGATGGCCCCTGGAGAAGACATCTTCTGGAAAGTACAATGTTGTTGGGGCCTGGCATGTAAGAGCCAAAGTATATAAAAATCAGTCATTAAGATTTAAGGTCAGGCATGCTGATCGATTTGATTTTGGAACCTCAATTGGTGAAGCTTCTTGGGAGATCAGTCTGAGGTTGAAAAAGCTGGGCTCAAAGTTGAAGGAAGAGAAGGTTGACGTCGACTCGGTTTCTGTGATGCTGGAGGAAAATATGAAGTTCATATATGACAACTTCTTAAGCTGTGAAAGTTTTCTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

402

Amino Acids

45.91

Weight (kDa)

8.18

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 42 - 394 2.6e-155 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1128
AccI GTMKAC 1 cut(s) 1128
AclWI GGATC 3 cut(s) 772, 876, 887
AcsI RAATTY 2 cut(s) 283, 511
AcuI CTGAAG 2 cut(s) 321, 468
AcyI GRCGYC 1 cut(s) 1125
AfaI GTAC 2 cut(s) 644, 950
AfiI CCNNNNNNNGG 1 cut(s) 611
AflII CTTAAG 1 cut(s) 1183
AgsI TTSAA 8 cut(s) 224, 368, 389, 532, 626, 681, 1087, 1108
AjnI CCWGG 5 cut(s) 338, 492, 673, 924, 965
AluBI AGCT 7 cut(s) 30, 41, 70, 275, 1061, 1093, 1188
AluI AGCT 7 cut(s) 30, 41, 70, 275, 1061, 1093, 1188
Alw21I GWGCWC 1 cut(s) 252
Alw26I GTCTC 2 cut(s) 796, 845
AlwI GGATC 3 cut(s) 772, 876, 887
Ama87I CYCGRG 1 cut(s) 450
AoxI GGCC 3 cut(s) 47, 920, 963
ApeKI GCWGC 1 cut(s) 881
ApoI RAATTY 2 cut(s) 283, 511
Asp700I GAANNNNTTC 1 cut(s) 1197
AspS9I GGNCC 3 cut(s) 796, 921, 963
AsuHPI GGTGA 3 cut(s) 325, 775, 1067
AsuII TTCGAA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 450
AvaII GGWCC 1 cut(s) 796
BaeGI GKGCMC 1 cut(s) 178
BanII GRGCYC 1 cut(s) 1100
BbsI GAAGAC 2 cut(s) 375, 938
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 1 cut(s) 868
BccI CCATC 4 cut(s) 214, 707, 760, 912
BceAI ACGGC 1 cut(s) 34
BcgI CGANNNNNNTGC 2 cut(s) 1010, 1044
BciT130I CCWGG 5 cut(s) 340, 494, 675, 926, 967
BcoDI GTCTC 2 cut(s) 796, 845
BfaI CTAG 2 cut(s) 272, 647
BfrI CTTAAG 1 cut(s) 1183
BisI GCNGC 1 cut(s) 882
BlsI GCNGC 1 cut(s) 883
Bme1390I CCNGG 5 cut(s) 340, 494, 675, 926, 967
Bme18I GGWCC 1 cut(s) 796
BmeT110I CYCGRG 1 cut(s) 450
BmgT120I GGNCC 3 cut(s) 796, 921, 963
BmiI GGNNCC 4 cut(s) 479, 923, 964, 1045
BmrFI CCNGG 5 cut(s) 340, 494, 675, 926, 967
BmrI ACTGGG 2 cut(s) 141, 193
BmsI GCATC 2 cut(s) 868, 1134
BmuI ACTGGG 2 cut(s) 141, 193
BpiI GAAGAC 2 cut(s) 375, 938
BpmI CTGGAG 3 cut(s) 45, 947, 1169
Bpu14I TTCGAA 1 cut(s) 164
Bsa29I ATCGAT 2 cut(s) 776, 1030
BsaHI GRCGYC 1 cut(s) 1125
BsaJI CCNNGG 4 cut(s) 234, 338, 339, 924
Bsc4I CCNNNNNNNGG 1 cut(s) 611
Bse1I ACTGG 2 cut(s) 136, 199
BseBI CCWGG 5 cut(s) 340, 494, 675, 926, 967
BseCI ATCGAT 2 cut(s) 776, 1030
BseDI CCNNGG 4 cut(s) 234, 338, 339, 924
BseGI GGATG 1 cut(s) 9
BseLI CCNNNNNNNGG 1 cut(s) 611
BseMII CTCAG 4 cut(s) 33, 791, 851, 1070
BseNI ACTGG 2 cut(s) 136, 199
BseRI GAGGAG 2 cut(s) 556, 677
BseSI GKGCMC 1 cut(s) 178
BseXI GCAGC 1 cut(s) 868
BseYI CCCAGC 1 cut(s) 1093
BshFI GGCC 3 cut(s) 49, 922, 965
BshVI ATCGAT 2 cut(s) 776, 1030
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 450
BslFI GGGAC 4 cut(s) 321, 335, 397, 587
BslI CCNNNNNNNGG 1 cut(s) 611
BsmAI GTCTC 2 cut(s) 796, 845
BsmBI CGTCTC 1 cut(s) 845
BsmFI GGGAC 4 cut(s) 321, 335, 397, 587
BsnI GGCC 3 cut(s) 49, 922, 965
BsoBI CYCGRG 1 cut(s) 450
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 178, 252, 1100
Bsp143I GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
BspANI GGCC 3 cut(s) 49, 922, 965
BspCNI CTCAG 4 cut(s) 34, 792, 850, 1071
BspDI ATCGAT 2 cut(s) 776, 1030
BspLI GGNNCC 4 cut(s) 479, 923, 964, 1045
BspPI GGATC 3 cut(s) 772, 876, 887
BspT104I TTCGAA 1 cut(s) 164
BspTI CTTAAG 1 cut(s) 1183
BsrI ACTGG 2 cut(s) 136, 199
BssECI CCNNGG 4 cut(s) 234, 338, 339, 924
BssMI GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
BssNI GRCGYC 1 cut(s) 1125
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 5 cut(s) 340, 494, 675, 926, 967
Bst6I CTCTTC 3 cut(s) 473, 815, 1107
BstACI GRCGYC 1 cut(s) 1125
BstAFI CTTAAG 1 cut(s) 1183
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 72, 1023
BstDEI CTNAG 4 cut(s) 42, 800, 837, 1079
BstF5I GGATG 1 cut(s) 9
BstKTI GATC 7 cut(s) 292, 548, 780, 871, 895, 1030, 1074
BstMAI GTCTC 2 cut(s) 796, 845
BstMBI GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
BstMWI GCNNNNNNNGC 2 cut(s) 155, 887
BstNI CCWGG 5 cut(s) 340, 494, 675, 926, 967
BstNSI RCATGY 2 cut(s) 974, 1025
BstSCI CCNGG 5 cut(s) 338, 492, 673, 924, 965
BstSLI GKGCMC 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 868
BstV2I GAAGAC 2 cut(s) 375, 938
BstX2I RGATCY 2 cut(s) 868, 892
BstYI RGATCY 2 cut(s) 868, 892
Bsu15I ATCGAT 2 cut(s) 776, 1030
BsuRI GGCC 3 cut(s) 49, 922, 965
BsuTUI ATCGAT 2 cut(s) 776, 1030
BtsCI GGATG 1 cut(s) 9
Cac8I GCNNGC 2 cut(s) 72, 1023
Cfr13I GGNCC 3 cut(s) 796, 921, 963
ClaI ATCGAT 2 cut(s) 776, 1030
CseI GACGC 3 cut(s) 257, 369, 862
CsiI ACCWGGT 1 cut(s) 673
Csp6I GTAC 2 cut(s) 643, 949
CviAII CATG 4 cut(s) 817, 971, 1022, 1206
CviQI GTAC 2 cut(s) 643, 949
DdeI CTNAG 4 cut(s) 42, 800, 837, 1079
DpnI GATC 7 cut(s) 291, 547, 779, 870, 894, 1029, 1073
DpnII GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
Eam1104I CTCTTC 3 cut(s) 473, 815, 1107
EarI CTCTTC 3 cut(s) 473, 815, 1107
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 1100
Eco47I GGWCC 1 cut(s) 796
Eco57I CTGAAG 2 cut(s) 321, 468
Eco88I CYCGRG 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 963
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 5 cut(s) 338, 492, 673, 924, 965
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 1100
ErhI CCWWGG 1 cut(s) 234
Esp3I CGTCTC 1 cut(s) 845
FaeI CATG 4 cut(s) 820, 974, 1025, 1209
FalI AAGNNNNNCTT 2 cut(s) 360, 392
FaqI GGGAC 4 cut(s) 321, 335, 397, 587
FatI CATG 4 cut(s) 816, 970, 1021, 1205
FblI GTMKAC 1 cut(s) 1128
Fnu4HI GCNGC 1 cut(s) 882
FriOI GRGCYC 1 cut(s) 1100
Fsp4HI GCNGC 1 cut(s) 882
FspBI CTAG 2 cut(s) 272, 647
GluI GCNGC 1 cut(s) 882
GsaI CCCAGC 1 cut(s) 1097
GsuI CTGGAG 3 cut(s) 45, 947, 1169
HaeIII GGCC 3 cut(s) 49, 922, 965
HgaI GACGC 3 cut(s) 257, 369, 862
Hin1I GRCGYC 1 cut(s) 1125
Hin1II CATG 4 cut(s) 820, 974, 1025, 1209
HincII GTYRAC 3 cut(s) 490, 1123, 1129
HindII GTYRAC 3 cut(s) 490, 1123, 1129
HindIII AAGCTT 2 cut(s) 68, 1059
HinfI GANTC 8 cut(s) 334, 410, 497, 626, 662, 790, 825, 1130
HpaI GTTAAC 1 cut(s) 490
HphI GGTGA 3 cut(s) 325, 775, 1067
Hpy166II GTNNAC 4 cut(s) 490, 592, 1123, 1129
Hpy188I TCNGA 6 cut(s) 260, 289, 504, 631, 840, 1080
Hpy188III TCNNGA 6 cut(s) 62, 221, 604, 794, 896, 942
Hpy8I GTNNAC 4 cut(s) 490, 592, 1123, 1129
Hpy99I CGWCG 1 cut(s) 1130
HpyAV CCTTC 7 cut(s) 130, 296, 394, 492, 898, 1102, 1111
HpyCH4IV ACGT 1 cut(s) 1125
HpyCH4V TGCA 3 cut(s) 693, 884, 890
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 887
HpyF3I CTNAG 4 cut(s) 42, 800, 837, 1079
HpySE526I ACGT 1 cut(s) 1125
Hsp92I GRCGYC 1 cut(s) 1125
Hsp92II CATG 4 cut(s) 820, 974, 1025, 1209
KspAI GTTAAC 1 cut(s) 490
Kzo9I GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 1 cut(s) 868
LweI GCATC 2 cut(s) 868, 1134
MabI ACCWGGT 1 cut(s) 673
MaeI CTAG 2 cut(s) 272, 647
MaeII ACGT 1 cut(s) 1125
MaeIII GTNAC 1 cut(s) 829
MalI GATC 7 cut(s) 291, 547, 779, 870, 894, 1029, 1073
MboI GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
MboII GAAGA 9 cut(s) 201, 380, 437, 460, 595, 832, 930, 943, 1124
MfeI CAATTG 2 cut(s) 885, 1050
MflI RGATCY 2 cut(s) 868, 892
MhlI GDGCHC 3 cut(s) 178, 252, 1100
MluCI AATT 6 cut(s) 124, 283, 511, 535, 885, 1050
MlyI GAGTC 4 cut(s) 343, 419, 834, 1124
MmeI TCCRAC 2 cut(s) 80, 436
MnlI CCTC 9 cut(s) 24, 39, 304, 390, 534, 698, 1057, 1074, 1144
MroXI GAANNNNTTC 1 cut(s) 1197
MseI TTAA 9 cut(s) 84, 216, 278, 489, 515, 812, 1004, 1011, 1184
MspCI CTTAAG 1 cut(s) 1183
MspR9I CCNGG 5 cut(s) 340, 494, 675, 926, 967
MunI CAATTG 2 cut(s) 885, 1050
MvaI CCWGG 5 cut(s) 340, 494, 675, 926, 967
MwoI GCNNNNNNNGC 2 cut(s) 155, 887
NdeII GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
NlaIII CATG 4 cut(s) 820, 974, 1025, 1209
NlaIV GGNNCC 4 cut(s) 479, 923, 964, 1045
NspI RCATGY 2 cut(s) 974, 1025
NspV TTCGAA 1 cut(s) 164
PaeI GCATGC 1 cut(s) 1025
PaeR7I CTCGAG 1 cut(s) 450
PasI CCCWGGG 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 1197
PfeI GAWTC 4 cut(s) 497, 626, 662, 790
PkrI GCNGC 1 cut(s) 883
PleI GAGTC 4 cut(s) 342, 418, 833, 1124
PpsI GAGTC 4 cut(s) 342, 418, 833, 1124
Psp6I CCWGG 5 cut(s) 338, 492, 673, 924, 965
PspFI CCCAGC 1 cut(s) 1093
PspGI CCWGG 5 cut(s) 338, 492, 673, 924, 965
PspN4I GGNNCC 4 cut(s) 479, 923, 964, 1045
PspPI GGNCC 3 cut(s) 796, 921, 963
PspXI VCTCGAGB 1 cut(s) 450
PsuI RGATCY 2 cut(s) 868, 892
RsaI GTAC 2 cut(s) 644, 950
RsaNI GTAC 2 cut(s) 643, 949
SalI GTCGAC 1 cut(s) 1127
SaqAI TTAA 9 cut(s) 84, 216, 278, 489, 515, 812, 1004, 1011, 1184
SatI GCNGC 1 cut(s) 882
Sau3AI GATC 7 cut(s) 289, 545, 777, 868, 892, 1027, 1071
Sau96I GGNCC 3 cut(s) 796, 921, 963
SchI GAGTC 4 cut(s) 343, 419, 834, 1124
ScrFI CCNGG 5 cut(s) 340, 494, 675, 926, 967
SduI GDGCHC 3 cut(s) 178, 252, 1100
SexAI ACCWGGT 1 cut(s) 673
SfaNI GCATC 2 cut(s) 868, 1134
Sfr274I CTCGAG 1 cut(s) 450
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 1 cut(s) 796
SlaI CTCGAG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 450, 1183
SmoI CTYRAG 2 cut(s) 450, 1183
SphI GCATGC 1 cut(s) 1025
Sse9I AATT 6 cut(s) 124, 283, 511, 535, 885, 1050
SspI AATATT 1 cut(s) 610
SspMI CTAG 2 cut(s) 272, 647
StyD4I CCNGG 5 cut(s) 338, 492, 673, 924, 965
StyI CCWWGG 1 cut(s) 234
TaiI ACGT 1 cut(s) 1128
TaqI TCGA 6 cut(s) 164, 451, 738, 776, 1030, 1128
TasI AATT 6 cut(s) 124, 283, 511, 535, 885, 1050
TatI WGTACW 1 cut(s) 948
TfiI GAWTC 4 cut(s) 497, 626, 662, 790
Tru1I TTAA 9 cut(s) 84, 216, 278, 489, 515, 812, 1004, 1011, 1184
Tru9I TTAA 9 cut(s) 84, 216, 278, 489, 515, 812, 1004, 1011, 1184
TseI GCWGC 1 cut(s) 881
TspDTI ATGAA 5 cut(s) 51, 296, 833, 1156, 1175
TspGWI ACGGA 1 cut(s) 593
Vha464I CTTAAG 1 cut(s) 1183
VpaK11BI GGWCC 1 cut(s) 796
XapI RAATTY 2 cut(s) 283, 511
XceI RCATGY 2 cut(s) 974, 1025
XcmI CCANNNNNNNNNTGG 1 cut(s) 336
XhoI CTCGAG 1 cut(s) 450
XmiI GTMKAC 1 cut(s) 1128
XmnI GAANNNNTTC 1 cut(s) 1197
XspI CTAG 2 cut(s) 272, 647
ZraI GACGTC 1 cut(s) 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.