Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

73317694 .. 73319122

Gene Structure 1429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0615700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGAATGCGGAAGATGATGATGATGATGATGAAAATGATGATGATGTGATGATGACGGCGGAAGATGATGATGATGAAAAATATGAGTTTTCTAATTTTATTCAATATCCAAGCATAGATCCAAACCCGAAATTGCAGCATTCCCAAGTTTTTAAGATTAGTATACGTGACCCTGTTTTAGTAGAGATGGACGACAAACTTTATCGTTTCGGTGGTCGGTGTGACTGTGAATCATTCGAGGTATTTGAACCAATACCGGATGACTGGTTGCCTCTGGATGCGCCTCCTCGAAAGTATCCCTACGGCTTCACTCATGCAATTGCAGGCACCAAAATCCTACTCTGGGGCAGAAATCAGACCGGAGTGTACATGTTTGACGCGACCCATCCGGAAAAAGGATGGACAGAATTGGACCCTTGTTTGGGAAGCTATATTCCCTCTATTGATGGTTATGATCAACTATTTGTCAAGTTGAAGTTTCACCATCATGGTGATAGTGAGGGTTTCCTAATGTTTTCCATTAATTTGGAACAACCTCATACAGTACTAGCATTCCACATGTCTTGTACATGTGATTTCTTGAAACCTATGGAACCTCTGCAGCTGCCAGAATGGCTTCCAAAATTTCATAGACCAAGTCGATGTCTGTTTTTTCACCTCGGAGGGCAAAAAGTCGGCCTTGTTTTCTCCCGTGATTCATTACGTGAGGATACATTACGTGATTACTATTATGATTTCCCTTCTGATTATGATGACGACGATAATGAAGACAACGAAGATGATGATAAATACAACAAAGACGATGACCATAATAATGATAATCACGACGCCTCTGATAATGTTAATTATGATGCTCTTGAGGATAATGACAATGTGAGAATTCTTGTCATAATCTTTGAATACGAAATTGCTGAGGAATCTATGAACATCAAATACAAGTTGCTTAGTACTCGCTACCTTGAATACTCTTCCAAGAATCCTGAAGAAGAATCTTGGAACGGTACTTCACAACTGATAGGTGCCTATGTGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

344

Amino Acids

40.22

Weight (kDa)

4.26

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	326, 1019
AccI	GTMKAC	1 cut(s)	163
AccII	CGCG	1 cut(s)	380
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	2 cut(s)	8, 59
AclWI	GGATC	1 cut(s)	113
AcsI	RAATTY	2 cut(s)	623, 879
AcuI	CTGAAG	1 cut(s)	1002
AcyI	GRCGYC	1 cut(s)	828
AfaI	GTAC	5 cut(s)	368, 546, 568, 949, 1003
AfiI	CCNNNNNNNGG	4 cut(s)	343, 395, 421, 422
AflIII	ACRYGT	3 cut(s)	369, 558, 569
AgsI	TTSAA	6 cut(s)	104, 248, 475, 583, 899, 962
AluBI	AGCT	2 cut(s)	429, 604
AluI	AGCT	2 cut(s)	429, 604
AlwI	GGATC	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	388
AoxI	GGCC	1 cut(s)	676
ApeKI	GCWGC	3 cut(s)	136, 601, 604
ApoI	RAATTY	2 cut(s)	623, 879
AseI	ATTAAT	1 cut(s)	522
Asp700I	GAANNNNTTC	1 cut(s)	615
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	412
AsuHPI	GGTGA	3 cut(s)	473, 503, 647
AvaII	GGWCC	1 cut(s)	412
BanI	GGYRCC	2 cut(s)	326, 1019
BbsI	GAAGAC	1 cut(s)	774
BbvCI	CCTCAGC	1 cut(s)	912
BbvI	GCAGC	3 cut(s)	148, 591, 613
BccI	CCATC	5 cut(s)	181, 393, 393, 440, 492
BceAI	ACGGC	2 cut(s)	72, 319
BciVI	GTATCC	2 cut(s)	306, 703
BclI	TGATCA	1 cut(s)	454
BfaI	CTAG	1 cut(s)	548
BfmI	CTRYAG	1 cut(s)	599
BfuI	GTATCC	2 cut(s)	306, 703
BglI	GCCNNNNNGGC	1 cut(s)	613
BisI	GCNGC	3 cut(s)	137, 602, 605
BlsI	GCNGC	3 cut(s)	138, 603, 606
BmcAI	AGTACT	2 cut(s)	546, 949
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	4 cut(s)	328, 414, 594, 1021
BmsI	GCATC	2 cut(s)	268, 841
BpiI	GAAGAC	1 cut(s)	774
Bpu10I	CCTNAGC	1 cut(s)	912
BpuEI	CTTGAG	1 cut(s)	878
BsaAI	YACGTR	3 cut(s)	167, 704, 719
BsaHI	GRCGYC	1 cut(s)	828
BsaJI	CCNNGG	1 cut(s)	658
BsaWI	WCCGGW	3 cut(s)	256, 359, 388
Bsc4I	CCNNNNNNNGG	4 cut(s)	343, 395, 421, 422
Bse1I	ACTGG	1 cut(s)	269
BseAI	TCCGGA	1 cut(s)	388
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	4 cut(s)	265, 283, 385, 404
BseLI	CCNNNNNNNGG	4 cut(s)	343, 395, 421, 422
BseMII	CTCAG	1 cut(s)	903
BseNI	ACTGG	1 cut(s)	269
BseRI	GAGGAG	1 cut(s)	276
BseXI	GCAGC	3 cut(s)	148, 591, 613
Bsh1236I	CGCG	1 cut(s)	380
BshFI	GGCC	1 cut(s)	678
BshNI	GGYRCC	2 cut(s)	326, 1019
BsiSI	CCGG	3 cut(s)	257, 360, 389
BslI	CCNNNNNNNGG	4 cut(s)	343, 395, 421, 422
BsmI	GAATGC	3 cut(s)	10, 139, 551
BsnI	GGCC	1 cut(s)	678
Bsp13I	TCCGGA	1 cut(s)	388
Bsp1407I	TGTACA	2 cut(s)	366, 566
Bsp143I	GATC	2 cut(s)	118, 454
BspACI	CCGC	2 cut(s)	8, 59
BspANI	GGCC	1 cut(s)	678
BspCNI	CTCAG	1 cut(s)	904
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	380
BspLI	GGNNCC	4 cut(s)	328, 414, 594, 1021
BspMAI	CTGCAG	1 cut(s)	603
BspPI	GGATC	1 cut(s)	113
BspT107I	GGYRCC	2 cut(s)	326, 1019
BsrGI	TGTACA	2 cut(s)	366, 566
BsrI	ACTGG	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	658
BssMI	GATC	2 cut(s)	118, 454
BssNAI	GTATAC	1 cut(s)	164
BssNI	GRCGYC	1 cut(s)	828
Bst1107I	GTATAC	1 cut(s)	164
Bst4CI	ACNGT	3 cut(s)	227, 544, 1001
Bst6I	CTCTTC	1 cut(s)	973
BstACI	GRCGYC	1 cut(s)	828
BstAUI	TGTACA	2 cut(s)	366, 566
BstBAI	YACGTR	3 cut(s)	167, 704, 719
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	912, 944
BstF5I	GGATG	4 cut(s)	265, 283, 385, 404
BstFNI	CGCG	1 cut(s)	380
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	121, 457
BstMBI	GATC	2 cut(s)	118, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	613
BstNSI	RCATGY	3 cut(s)	373, 562, 573
BstSFI	CTRYAG	1 cut(s)	599
BstUI	CGCG	1 cut(s)	380
BstV1I	GCAGC	3 cut(s)	148, 591, 613
BstV2I	GAAGAC	1 cut(s)	774
BstX2I	RGATCY	1 cut(s)	118
BstXI	CCANNNNNNTGG	1 cut(s)	526
BstYI	RGATCY	1 cut(s)	118
BstZ17I	GTATAC	1 cut(s)	164
BsuI	GTATCC	2 cut(s)	306, 703
BsuRI	GGCC	1 cut(s)	678
BtsCI	GGATG	4 cut(s)	265, 283, 385, 404
Cac8I	GCNNGC	1 cut(s)	325
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	412
CseI	GACGC	2 cut(s)	386, 836
Csp6I	GTAC	5 cut(s)	367, 545, 567, 948, 1002
CspCI	CAANNNNNGTGG	2 cut(s)	545, 580
CviAII	CATG	5 cut(s)	314, 370, 488, 559, 570
CviJI	RGCY	5 cut(s)	306, 429, 604, 616, 678
CviKI_1	RGCY	5 cut(s)	306, 429, 604, 616, 678
CviQI	GTAC	5 cut(s)	367, 545, 567, 948, 1002
DdeI	CTNAG	2 cut(s)	912, 944
DpnI	GATC	2 cut(s)	120, 456
DpnII	GATC	2 cut(s)	118, 454
Eam1104I	CTCTTC	1 cut(s)	973
EarI	CTCTTC	1 cut(s)	973
EciI	GGCGGA	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	1002
EcoRI	GAATTC	1 cut(s)	879
FaeI	CATG	5 cut(s)	317, 373, 491, 562, 573
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FatI	CATG	5 cut(s)	313, 369, 487, 558, 569
FbaI	TGATCA	1 cut(s)	454
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	3 cut(s)	137, 602, 605
FokI	GGATG	4 cut(s)	272, 290, 372, 411
Fsp4HI	GCNGC	3 cut(s)	137, 602, 605
FspBI	CTAG	1 cut(s)	548
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	3 cut(s)	137, 602, 605
HaeIII	GGCC	1 cut(s)	678
HapII	CCGG	3 cut(s)	257, 360, 389
HgaI	GACGC	2 cut(s)	386, 836
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	1 cut(s)	828
Hin1II	CATG	5 cut(s)	317, 373, 491, 562, 573
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	5 cut(s)	230, 695, 917, 976, 989
HpaII	CCGG	3 cut(s)	257, 360, 389
HphI	GGTGA	3 cut(s)	473, 503, 647
Hpy166II	GTNNAC	2 cut(s)	164, 367
Hpy188I	TCNGA	4 cut(s)	357, 662, 745, 835
Hpy188III	TCNNGA	6 cut(s)	275, 389, 580, 824, 857, 980
Hpy8I	GTNNAC	2 cut(s)	164, 367
Hpy99I	CGWCG	2 cut(s)	761, 830
HpyAV	CCTTC	1 cut(s)	750
HpyCH4III	ACNGT	3 cut(s)	227, 544, 1001
HpyCH4IV	ACGT	3 cut(s)	166, 703, 718
HpyCH4V	TGCA	4 cut(s)	136, 317, 323, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	613
HpyF3I	CTNAG	2 cut(s)	912, 944
HpySE526I	ACGT	3 cut(s)	166, 703, 718
Hsp92I	GRCGYC	1 cut(s)	828
Hsp92II	CATG	5 cut(s)	317, 373, 491, 562, 573
HspAI	GCGC	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	454
Kzo9I	GATC	2 cut(s)	118, 454
Lsp1109I	GCAGC	3 cut(s)	148, 591, 613
LweI	GCATC	2 cut(s)	268, 841
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	3 cut(s)	166, 703, 718
MaeIII	GTNAC	2 cut(s)	167, 221
MalI	GATC	2 cut(s)	120, 456
MboI	GATC	2 cut(s)	118, 454
MboII	GAAGA	7 cut(s)	23, 74, 779, 788, 960, 995, 998
MfeI	CAATTG	1 cut(s)	318
MflI	RGATCY	1 cut(s)	118
MluCI	AATT	9 cut(s)	94, 131, 318, 407, 523, 623, 844, 879, 906
MroI	TCCGGA	1 cut(s)	388
MroXI	GAANNNNTTC	1 cut(s)	615
MseI	TTAA	3 cut(s)	153, 522, 843
MslI	CAYNNNNRTG	3 cut(s)	486, 489, 813
MspA1I	CMGCKG	1 cut(s)	604
MspI	CCGG	3 cut(s)	257, 360, 389
MunI	CAATTG	1 cut(s)	318
Mva1269I	GAATGC	3 cut(s)	10, 139, 551
MvnI	CGCG	1 cut(s)	380
MwoI	GCNNNNNNNGC	1 cut(s)	613
NdeII	GATC	2 cut(s)	118, 454
NlaIII	CATG	5 cut(s)	317, 373, 491, 562, 573
NlaIV	GGNNCC	4 cut(s)	328, 414, 594, 1021
NmuCI	GTSAC	2 cut(s)	167, 221
NspI	RCATGY	3 cut(s)	373, 562, 573
PciI	ACATGT	3 cut(s)	369, 558, 569
PctI	GAATGC	3 cut(s)	10, 139, 551
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	5 cut(s)	230, 695, 917, 976, 989
PflFI	GACNNNGTC	1 cut(s)	636
PkrI	GCNGC	3 cut(s)	138, 603, 606
Ppu21I	YACGTR	3 cut(s)	167, 704, 719
PscI	ACATGT	3 cut(s)	369, 558, 569
PshBI	ATTAAT	1 cut(s)	522
PspN4I	GGNNCC	4 cut(s)	328, 414, 594, 1021
PspPI	GGNCC	1 cut(s)	412
PsrI	GAACNNNNNNTAC	2 cut(s)	917, 949
PstI	CTGCAG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	118
PsyI	GACNNNGTC	1 cut(s)	636
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	5 cut(s)	368, 546, 568, 949, 1003
RsaNI	GTAC	5 cut(s)	367, 545, 567, 948, 1002
RseI	CAYNNNNRTG	3 cut(s)	486, 489, 813
SaqAI	TTAA	3 cut(s)	153, 522, 843
SatI	GCNGC	3 cut(s)	137, 602, 605
Sau3AI	GATC	2 cut(s)	118, 454
Sau96I	GGNCC	1 cut(s)	412
ScaI	AGTACT	2 cut(s)	546, 949
SfaNI	GCATC	2 cut(s)	268, 841
SfcI	CTRYAG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	3 cut(s)	486, 489, 813
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	9 cut(s)	94, 131, 318, 407, 523, 623, 844, 879, 906
SsiI	CCGC	2 cut(s)	8, 59
SspMI	CTAG	1 cut(s)	548
TaaI	ACNGT	3 cut(s)	227, 544, 1001
TaiI	ACGT	3 cut(s)	169, 706, 721
TaqI	TCGA	3 cut(s)	237, 289, 640
TasI	AATT	9 cut(s)	94, 131, 318, 407, 523, 623, 844, 879, 906
TatI	WGTACW	4 cut(s)	366, 544, 566, 947
TfiI	GAWTC	5 cut(s)	230, 695, 917, 976, 989
Tru1I	TTAA	3 cut(s)	153, 522, 843
Tru9I	TTAA	3 cut(s)	153, 522, 843
TseFI	GTSAC	2 cut(s)	167, 221
TseI	GCWGC	3 cut(s)	136, 601, 604
Tsp45I	GTSAC	2 cut(s)	167, 221
TspDTI	ATGAA	7 cut(s)	17, 45, 90, 617, 687, 780, 938
Tth111I	GACNNNGTC	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	412
VspI	ATTAAT	1 cut(s)	522
XapI	RAATTY	2 cut(s)	623, 879
XceI	RCATGY	3 cut(s)	373, 562, 573
XmiI	GTMKAC	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	1 cut(s)	548
ZrmI	AGTACT	2 cut(s)	546, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.