Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

22355320 .. 22356083

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCTATGCACGAAGAGACTTGTAACAGATCTGACTGATGATGAGATGCAAAGCATTAGGGATCTGATTAATTCGGCAATTCTCGATCCATATGTGAAGGGTGGGTTGAGGTGGCCTCCGGGAAAGGAGTCTTCTGGAGATAAATATAAAGTTGTTGGGGTTTGGCACGTAATAGCTAATATGTATAAAAATTCATCACTGAGACTGAAAGTAAGACATGCTGATCGATTCGATTTTAGAACCTTAACTGGGGAAGCTACTTGGGAGACAAGTCTGATGCTGAAAAAGGTCATTTCAATGTTGCAGGAAGAGAATGTTGAAGTCAGCTCAATTTCTGAGGTACTCAAGGAAGATGTGCAGCTGATATGGGATAACTTCTTGAGCTGTGAACGTTTTCTAACAAGAAATTGCATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

140

Amino Acids

16.09

Weight (kDa)

6.13

Isoelectric Point (pI)

41.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	391
AclWI	GGATC	2 cut(s)	69, 80
AcsI	RAATTY	1 cut(s)	190
AfaI	GTAC	1 cut(s)	342
AfiI	CCNNNNNNNGG	1 cut(s)	249
AgsI	TTSAA	2 cut(s)	297, 320
AluBI	AGCT	5 cut(s)	176, 257, 327, 361, 384
AluI	AGCT	5 cut(s)	176, 257, 327, 361, 384
Alw26I	GTCTC	3 cut(s)	10, 196, 260
AlwI	GGATC	2 cut(s)	69, 80
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	1 cut(s)	358
ApoI	RAATTY	1 cut(s)	190
AseI	ATTAAT	1 cut(s)	69
Asp700I	GAANNNNTTC	1 cut(s)	393
AsuC2I	CCSGG	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	370
BcnI	CCSGG	1 cut(s)	120
BcoDI	GTCTC	3 cut(s)	10, 196, 260
BglII	AGATCT	1 cut(s)	28
BisI	GCNGC	1 cut(s)	359
BlsI	GCNGC	1 cut(s)	360
Bme1390I	CCNGG	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	120
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	36, 267
BmuI	ACTGGG	1 cut(s)	258
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	2 cut(s)	329, 400
BpuMI	CCSGG	1 cut(s)	120
Bsa29I	ATCGAT	1 cut(s)	226
BsaAI	YACGTR	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	1 cut(s)	249
Bse1I	ACTGG	1 cut(s)	253
BseCI	ATCGAT	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	249
BseMII	CTCAG	2 cut(s)	191, 327
BseNI	ACTGG	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	370
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	1 cut(s)	115
BshVI	ATCGAT	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	249
BsmAI	GTCTC	3 cut(s)	10, 196, 260
BsnI	GGCC	1 cut(s)	115
Bsp143I	GATC	4 cut(s)	28, 61, 85, 223
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	2 cut(s)	192, 328
BspDI	ATCGAT	1 cut(s)	226
BspPI	GGATC	2 cut(s)	69, 80
BsrI	ACTGG	1 cut(s)	253
BssMI	GATC	4 cut(s)	28, 61, 85, 223
Bst6I	CTCTTC	2 cut(s)	8, 303
BstBAI	YACGTR	1 cut(s)	169
BstDEI	CTNAG	2 cut(s)	200, 336
BstKTI	GATC	4 cut(s)	31, 64, 88, 226
BstMAI	GTCTC	3 cut(s)	10, 196, 260
BstMBI	GATC	4 cut(s)	28, 61, 85, 223
BstNSI	RCATGY	2 cut(s)	221, 415
BstSCI	CCNGG	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	370
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	2 cut(s)	28, 61
BstYI	RGATCY	2 cut(s)	28, 61
Bsu15I	ATCGAT	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	115
BsuTUI	ATCGAT	1 cut(s)	226
BtsIMutI	CAGTG	1 cut(s)	197
ClaI	ATCGAT	1 cut(s)	226
Csp6I	GTAC	1 cut(s)	341
CviAII	CATG	2 cut(s)	218, 412
CviJI	RGCY	6 cut(s)	115, 176, 257, 327, 361, 384
CviKI_1	RGCY	6 cut(s)	115, 176, 257, 327, 361, 384
CviQI	GTAC	1 cut(s)	341
DdeI	CTNAG	2 cut(s)	200, 336
DpnI	GATC	4 cut(s)	30, 63, 87, 225
DpnII	GATC	4 cut(s)	28, 61, 85, 223
Eam1104I	CTCTTC	2 cut(s)	8, 303
EarI	CTCTTC	2 cut(s)	8, 303
FaeI	CATG	2 cut(s)	221, 415
FaiI	YATR	9 cut(s)	7, 91, 93, 147, 182, 186, 219, 367, 413
FatI	CATG	2 cut(s)	217, 411
FauNDI	CATATG	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	359
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	115
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	2 cut(s)	221, 415
HinfI	GANTC	2 cut(s)	128, 228
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	4 cut(s)	33, 66, 276, 337
Hpy188III	TCNNGA	3 cut(s)	83, 135, 379
Hpy8I	GTNNAC	1 cut(s)	389
HpyAV	CCTTC	1 cut(s)	91
HpyCH4IV	ACGT	2 cut(s)	168, 391
HpyCH4V	TGCA	5 cut(s)	9, 49, 304, 358, 411
HpyF3I	CTNAG	2 cut(s)	200, 336
HpySE526I	ACGT	2 cut(s)	168, 391
Hsp92II	CATG	2 cut(s)	221, 415
Kzo9I	GATC	4 cut(s)	28, 61, 85, 223
LpnPI	CCDG	4 cut(s)	120, 132, 234, 290
Lsp1109I	GCAGC	1 cut(s)	370
LweI	GCATC	2 cut(s)	36, 267
MaeII	ACGT	2 cut(s)	168, 391
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	4 cut(s)	30, 63, 87, 225
MboI	GATC	4 cut(s)	28, 61, 85, 223
MboII	GAAGA	4 cut(s)	25, 123, 320, 362
MflI	RGATCY	2 cut(s)	28, 61
MluCI	AATT	5 cut(s)	70, 78, 190, 330, 406
MlyI	GAGTC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	102, 126, 331
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	2 cut(s)	69, 245
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	1 cut(s)	361
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	120
NciI	CCSGG	1 cut(s)	120
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	4 cut(s)	28, 61, 85, 223
NlaIII	CATG	2 cut(s)	221, 415
NspI	RCATGY	2 cut(s)	221, 415
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	228
PfoI	TCCNGGA	1 cut(s)	118
PkrI	GCNGC	1 cut(s)	360
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Ppu21I	YACGTR	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	69
Psp1406I	AACGTT	1 cut(s)	391
PsuI	RGATCY	2 cut(s)	28, 61
PvuII	CAGCTG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	342
RsaNI	GTAC	1 cut(s)	341
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	2 cut(s)	69, 245
SatI	GCNGC	1 cut(s)	359
Sau3AI	GATC	4 cut(s)	28, 61, 85, 223
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	120
SfaNI	GCATC	2 cut(s)	36, 267
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	2 cut(s)	344, 379
SmoI	CTYRAG	2 cut(s)	344, 379
Sse9I	AATT	5 cut(s)	70, 78, 190, 330, 406
StyD4I	CCNGG	1 cut(s)	118
TaiI	ACGT	2 cut(s)	171, 394
TaqI	TCGA	3 cut(s)	84, 226, 231
TasI	AATT	5 cut(s)	70, 78, 190, 330, 406
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	2 cut(s)	69, 245
Tru9I	TTAA	2 cut(s)	69, 245
TscAI	CASTG	1 cut(s)	204
TseI	GCWGC	1 cut(s)	358
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	1 cut(s)	204
VspI	ATTAAT	1 cut(s)	69
XapI	RAATTY	1 cut(s)	190
XceI	RCATGY	2 cut(s)	221, 415
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.