Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

73286297 .. 73287496

Gene Structure 1200 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0615500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGAAAAAAGAAAGCTTGAAGAGTAAGTCCCTCTACTTATGTTTTGAGCAGAAAAATTGTTCCAACAATGCTCACGTTATTCAATCAATCGAATTGAGCCATGTATTGGCAGCACCAACTGGTGGTGATCATGGCGGCGATGAAATTAAGTTAGAGGAAGTTGCTTATAGATACGGACCGTACACGAATGTTCCAGGCTGTATGAGAAGTAGTGTCATCGGCTCCAAAATTATTTTCTCCGGTGGCGAGGTATATAATAAAAAGAGAAGCATTACTCCTCCCGTGGGGATTGCAAGCAAAGAAGTTTGTGTGTTTGAGACAGATCCAAGCATAGATCCAAACCCTAGATTTCAGCCCTCCCAAGTGTTTAAGACTAGTAGACCCGATCCTTTCCTTGTAGAAGTGGACGACAAACTTTATTGTTTTGGTGGTTCAAGTGACTCGGTGTCATTTGAGGTATTCGACAAGACACATGAGACATGGTTGCCTCTAGATGAGCCTCCTCGGAGATATCCGTACAGCTTCGATCATGCAATAGCGGGAACCAAAATCTTACTCTGGGTAGAAAACCAAACCGGAGTATTTGGGTTTGACGTGACTCACCCAGAAAAAGGATGGACAAAGTTGGACTCTTGTTTGGGAAGCTGTATTCCATATGTCAATGGCTATCATCAACTATTTCTCAAGTTGAAGCTTCATCGTGGTGATGATAATGGTTTTCTAATGTTCACCTGTAAGTTGGAACAACCTCAGACTGTTGGAGTCTTCCACATGTCGCATGAATGTGATTCTTTGAAACCTATGGAACCTCTGCAGTTGCCGAAATTGCCTCATAAATTACCTAGACCAACACGATGTAAGTTTTTCCATGTAGAAGATAAAAAAGTTGGGATTGTTTTCTTCCATGACCATTATGAGTATTATTATGAGGATTATGATTATTATGAGGATTATGATTATTATGACGATGACGATGACGATGACGATGTGACCATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGATGTTAGCAGGGTGAGAATTCTTGTCATAATATTTGAATACGAAATTGCGGAGGAATCTATGGATATCAAGTACAAATTGCTCACTAGTCGCTGCCTGGAATACTCTCCCCACAACCTTGAAGAAGTTAGCAACACCGCATCAATTCTCATGGGGTCCTATGTGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

46.02

Weight (kDa)

4.78

Isoelectric Point (pI)

49.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	106, 122
AccI	GTMKAC	1 cut(s)	379
AciI	CCGC	4 cut(s)	135, 539, 1079, 1167
AclWI	GGATC	3 cut(s)	317, 329, 380
AcsI	RAATTY	1 cut(s)	1047
AfaI	GTAC	3 cut(s)	182, 518, 1103
AfiI	CCNNNNNNNGG	4 cut(s)	106, 122, 284, 611
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	7 cut(s)	19, 83, 435, 691, 796, 1067, 1151
AhdI	GACNNNNNGTC	1 cut(s)	445
AhlI	ACTAGT	2 cut(s)	374, 1115
AjiI	CACGTC	1 cut(s)	595
AjnI	CCWGG	2 cut(s)	193, 1125
AjuI	GAANNNNNNNTTGG	2 cut(s)	218, 250
AluBI	AGCT	4 cut(s)	15, 522, 645, 694
AluI	AGCT	4 cut(s)	15, 522, 645, 694
Alw26I	GTCTC	2 cut(s)	311, 470
AlwI	GGATC	3 cut(s)	317, 329, 380
ApeKI	GCWGC	2 cut(s)	110, 1122
ApoI	RAATTY	1 cut(s)	1047
AspS9I	GGNCC	2 cut(s)	176, 1185
AsuHPI	GGTGA	5 cut(s)	137, 593, 716, 721, 1054
AvaII	GGWCC	2 cut(s)	176, 1185
BbsI	GAAGAC	1 cut(s)	757
BbvI	GCAGC	2 cut(s)	122, 1109
BccI	CCATC	1 cut(s)	609
BciT130I	CCWGG	2 cut(s)	195, 1127
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	311, 470
BcuI	ACTAGT	2 cut(s)	374, 1115
BfaI	CTAG	5 cut(s)	345, 375, 491, 843, 1116
BfmI	CTRYAG	1 cut(s)	812
BisI	GCNGC	3 cut(s)	111, 136, 1123
BlsI	GCNGC	3 cut(s)	112, 137, 1124
Bme1390I	CCNGG	2 cut(s)	195, 1127
Bme18I	GGWCC	2 cut(s)	176, 1185
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmgBI	CACGTC	1 cut(s)	595
BmgT120I	GGNCC	2 cut(s)	176, 1185
BmiI	GGNNCC	4 cut(s)	223, 544, 807, 1186
BmrFI	CCNGG	2 cut(s)	195, 1127
BmsI	GCATC	1 cut(s)	1178
BpiI	GAAGAC	1 cut(s)	757
BpuEI	CTTGAG	1 cut(s)	668
BsaJI	CCNNGG	3 cut(s)	282, 503, 993
BsaWI	WCCGGW	2 cut(s)	239, 575
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 122, 284, 611
Bse1I	ACTGG	1 cut(s)	124
BseBI	CCWGG	2 cut(s)	195, 1127
BseDI	CCNNGG	3 cut(s)	282, 503, 993
BseGI	GGATG	2 cut(s)	620, 1036
BseLI	CCNNNNNNNGG	4 cut(s)	106, 122, 284, 611
BseMII	CTCAG	1 cut(s)	764
BseNI	ACTGG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	122, 1109
BsiSI	CCGG	2 cut(s)	240, 576
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	4 cut(s)	106, 122, 284, 611
BsmAI	GTCTC	2 cut(s)	311, 470
BsmFI	GGGAC	1 cut(s)	13
Bsp143I	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
Bsp19I	CCATGG	1 cut(s)	993
BspACI	CCGC	4 cut(s)	135, 539, 1079, 1167
BspCNI	CTCAG	1 cut(s)	763
BspLI	GGNNCC	4 cut(s)	223, 544, 807, 1186
BspMAI	CTGCAG	1 cut(s)	816
BspPI	GGATC	3 cut(s)	317, 329, 380
BsrI	ACTGG	1 cut(s)	124
BssECI	CCNNGG	3 cut(s)	282, 503, 993
BssMI	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
BssT1I	CCWWGG	1 cut(s)	993
Bst2UI	CCWGG	2 cut(s)	195, 1127
Bst4CI	ACNGT	2 cut(s)	180, 757
Bst6I	CTCTTC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	750
BstDSI	CCRYGG	2 cut(s)	282, 993
BstF5I	GGATG	2 cut(s)	620, 1036
BstKTI	GATC	6 cut(s)	130, 325, 337, 388, 529, 1197
BstMAI	GTCTC	2 cut(s)	311, 470
BstMBI	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
BstMWI	GCNNNNNNNGC	1 cut(s)	826
BstNI	CCWGG	2 cut(s)	195, 1127
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	2 cut(s)	193, 1125
BstSFI	CTRYAG	1 cut(s)	812
BstV1I	GCAGC	2 cut(s)	122, 1109
BstV2I	GAAGAC	1 cut(s)	757
BstX2I	RGATCY	2 cut(s)	322, 334
BstYI	RGATCY	2 cut(s)	322, 334
BtgI	CCRYGG	2 cut(s)	282, 993
BtgZI	GCGATG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	595
BtsCI	GGATG	2 cut(s)	620, 1036
Cac8I	GCNNGC	1 cut(s)	295
Cfr13I	GGNCC	2 cut(s)	176, 1185
CpoI	CGGWCCG	1 cut(s)	176
Csp6I	GTAC	3 cut(s)	181, 517, 1102
CspI	CGGWCCG	1 cut(s)	176
CviQI	GTAC	3 cut(s)	181, 517, 1102
DdeI	CTNAG	1 cut(s)	750
DpnI	GATC	6 cut(s)	129, 324, 336, 387, 528, 1196
DpnII	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
DriI	GACNNNNNGTC	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	14
Eam1105I	GACNNNNNGTC	1 cut(s)	445
EarI	CTCTTC	1 cut(s)	14
Eco130I	CCWWGG	1 cut(s)	993
Eco32I	GATATC	2 cut(s)	512, 1096
Eco47I	GGWCC	2 cut(s)	176, 1185
EcoO109I	RGGNCCY	1 cut(s)	1185
EcoRI	GAATTC	1 cut(s)	1047
EcoRII	CCWGG	2 cut(s)	193, 1125
EcoRV	GATATC	2 cut(s)	512, 1096
EcoT14I	CCWWGG	1 cut(s)	993
ErhI	CCWWGG	1 cut(s)	993
FaqI	GGGAC	1 cut(s)	13
FauI	CCCGC	1 cut(s)	532
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	127
FblI	GTMKAC	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	111, 136, 1123
FokI	GGATG	2 cut(s)	627, 1043
Fsp4HI	GCNGC	3 cut(s)	111, 136, 1123
FspBI	CTAG	5 cut(s)	345, 375, 491, 843, 1116
GluI	GCNGC	3 cut(s)	111, 136, 1123
HapII	CCGG	2 cut(s)	240, 576
HindIII	AAGCTT	2 cut(s)	13, 692
HinfI	GANTC	6 cut(s)	440, 598, 629, 762, 788, 1085
HpaII	CCGG	2 cut(s)	240, 576
HphI	GGTGA	5 cut(s)	137, 593, 716, 721, 1054
Hpy166II	GTNNAC	4 cut(s)	183, 380, 406, 729
Hpy188I	TCNGA	2 cut(s)	507, 753
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	4 cut(s)	183, 380, 406, 729
HpyCH4III	ACNGT	2 cut(s)	180, 757
HpyCH4IV	ACGT	2 cut(s)	75, 594
HpyCH4V	TGCA	3 cut(s)	293, 533, 814
HpyF10VI	GCNNNNNNNGC	1 cut(s)	826
HpyF3I	CTNAG	1 cut(s)	750
HpySE526I	ACGT	2 cut(s)	75, 594
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
LmnI	GCTCC	1 cut(s)	227
Lsp1109I	GCAGC	2 cut(s)	122, 1109
LweI	GCATC	1 cut(s)	1178
MaeI	CTAG	5 cut(s)	345, 375, 491, 843, 1116
MaeII	ACGT	2 cut(s)	75, 594
MaeIII	GTNAC	3 cut(s)	437, 595, 988
MalI	GATC	6 cut(s)	129, 324, 336, 387, 528, 1196
MboI	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
MboII	GAAGA	5 cut(s)	31, 757, 887, 892, 1163
MflI	RGATCY	2 cut(s)	322, 334
MlyI	GAGTC	4 cut(s)	434, 592, 623, 771
MmeI	TCCRAC	4 cut(s)	87, 606, 720, 739
MseI	TTAA	2 cut(s)	147, 369
MslI	CAYNNNNRTG	2 cut(s)	702, 783
MspI	CCGG	2 cut(s)	240, 576
MspR9I	CCNGG	2 cut(s)	195, 1127
MvaI	CCWGG	2 cut(s)	195, 1127
MwoI	GCNNNNNNNGC	1 cut(s)	826
NcoI	CCATGG	1 cut(s)	993
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
NlaIV	GGNNCC	4 cut(s)	223, 544, 807, 1186
NmuCI	GTSAC	3 cut(s)	437, 595, 988
NspI	RCATGY	1 cut(s)	775
PciI	ACATGT	1 cut(s)	771
PfeI	GAWTC	2 cut(s)	788, 1085
PflMI	CCANNNNNTGG	2 cut(s)	106, 122
PkrI	GCNGC	3 cut(s)	112, 137, 1124
PleI	GAGTC	4 cut(s)	434, 592, 623, 770
PpsI	GAGTC	4 cut(s)	434, 592, 623, 770
PpuMI	RGGWCCY	1 cut(s)	1185
PscI	ACATGT	1 cut(s)	771
Psp5II	RGGWCCY	1 cut(s)	1185
Psp6I	CCWGG	2 cut(s)	193, 1125
PspGI	CCWGG	2 cut(s)	193, 1125
PspN4I	GGNNCC	4 cut(s)	223, 544, 807, 1186
PspPI	GGNCC	2 cut(s)	176, 1185
PspPPI	RGGWCCY	1 cut(s)	1185
PstI	CTGCAG	1 cut(s)	816
PsuI	RGATCY	2 cut(s)	322, 334
RsaI	GTAC	3 cut(s)	182, 518, 1103
RsaNI	GTAC	3 cut(s)	181, 517, 1102
RseI	CAYNNNNRTG	2 cut(s)	702, 783
Rsr2I	CGGWCCG	1 cut(s)	176
RsrII	CGGWCCG	1 cut(s)	176
SaqAI	TTAA	2 cut(s)	147, 369
SatI	GCNGC	3 cut(s)	111, 136, 1123
Sau3AI	GATC	6 cut(s)	127, 322, 334, 385, 526, 1194
Sau96I	GGNCC	2 cut(s)	176, 1185
SchI	GAGTC	4 cut(s)	434, 592, 623, 771
ScrFI	CCNGG	2 cut(s)	195, 1127
SfaNI	GCATC	1 cut(s)	1178
SfcI	CTRYAG	1 cut(s)	812
SinI	GGWCC	2 cut(s)	176, 1185
SmiMI	CAYNNNNRTG	2 cut(s)	702, 783
SmlI	CTYRAG	1 cut(s)	683
SmoI	CTYRAG	1 cut(s)	683
SpeI	ACTAGT	2 cut(s)	374, 1115
SsiI	CCGC	4 cut(s)	135, 539, 1079, 1167
SspI	AATATT	1 cut(s)	1062
SspMI	CTAG	5 cut(s)	345, 375, 491, 843, 1116
StyD4I	CCNGG	2 cut(s)	193, 1125
StyI	CCWWGG	1 cut(s)	993
TaaI	ACNGT	2 cut(s)	180, 757
TaiI	ACGT	2 cut(s)	78, 597
TaqI	TCGA	3 cut(s)	90, 462, 525
TatI	WGTACW	1 cut(s)	1101
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	788, 1085
Tru1I	TTAA	2 cut(s)	147, 369
Tru9I	TTAA	2 cut(s)	147, 369
TseFI	GTSAC	3 cut(s)	437, 595, 988
TseI	GCWGC	2 cut(s)	110, 1122
Tsp45I	GTSAC	3 cut(s)	437, 595, 988
TspDTI	ATGAA	4 cut(s)	17, 156, 686, 795
TspGWI	ACGGA	2 cut(s)	189, 504
Van91I	CCANNNNNTGG	2 cut(s)	106, 122
VpaK11BI	GGWCC	2 cut(s)	176, 1185
XapI	RAATTY	1 cut(s)	1047
XbaI	TCTAGA	1 cut(s)	490
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	612
XmiI	GTMKAC	1 cut(s)	379
XspI	CTAG	5 cut(s)	345, 375, 491, 843, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.