Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

53710875 .. 53711566

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTCACCCTGTTGCACCCCTCAGAATCTTATGTTTCATTTACGGCCATTGACGGGTCAAAGCATGAAATTGGGTCCGAATCTAACGAGCAGTTCTATGAAGGGACAGGAAAAGCAATTCGATCTCACTTGTCATCGAAGTCTAATGATAATTGGATTGGGAAGGTAGTTTGGGCAGACCAAGCCATTTCGAAATGGTGGGCACATGGTTTGGATGATGACACCCAGTTTCCATCTTCTGTTAATCTTGAACTCATTTCCTTGGAAACCATTGAGCACAAAATCGGAGAAAAGGGCCTAGCTTTAATGAATTCTGGTCTTGCTACTGAAGGTAGTGAGGTGAAATGGGACTTGCCAAAGAGTCCTTGGGTGTATATAGCAGAGAATGTGCTTGAAGACCTAATTGCGTCTTTTGACAATATGAGGAAGGAAATGGAGCCCCCAAAGTTAGAAGAACTGAAGCCTAATTTGGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.82

Weight (kDa)

4.75

Isoelectric Point (pI)

29.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	52 - 159	1.7e-31	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	348, 479
AfiI	CCNNNNNNNGG	1 cut(s)	54
AgsI	TTSAA	2 cut(s)	251, 395
AjuI	GAANNNNNNNTTGG	1 cut(s)	452
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Alw21I	GWGCWC	1 cut(s)	279
AoxI	GGCC	2 cut(s)	45, 295
ApoI	RAATTY	1 cut(s)	310
AspS9I	GGNCC	2 cut(s)	75, 295
AsuHPI	GGTGA	1 cut(s)	352
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	441
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	1 cut(s)	241
BceAI	ACGGC	1 cut(s)	60
BfaI	CTAG	1 cut(s)	299
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 295
BmiI	GGNNCC	2 cut(s)	76, 438
BmrI	ACTGGG	1 cut(s)	220
BmuI	ACTGGG	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	402
Bpu14I	TTCGAA	1 cut(s)	191
BsaJI	CCNNGG	2 cut(s)	261, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	54
Bse1I	ACTGG	1 cut(s)	226
BseDI	CCNNGG	2 cut(s)	261, 365
BseGI	GGATG	1 cut(s)	220
BseLI	CCNNNNNNNGG	1 cut(s)	54
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	226
BseSI	GKGCMC	1 cut(s)	205
BshFI	GGCC	2 cut(s)	47, 297
BsiHKAI	GWGCWC	1 cut(s)	279
BslFI	GGGAC	2 cut(s)	118, 362
BslI	CCNNNNNNNGG	1 cut(s)	54
BsmFI	GGGAC	2 cut(s)	118, 362
BsnI	GGCC	2 cut(s)	47, 297
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	205, 279, 441
Bsp143I	GATC	1 cut(s)	122
BspANI	GGCC	2 cut(s)	47, 297
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	2 cut(s)	76, 438
BspT104I	TTCGAA	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	2 cut(s)	261, 365
BssMI	GATC	1 cut(s)	122
BssT1I	CCWWGG	2 cut(s)	261, 365
BstBI	TTCGAA	1 cut(s)	191
BstDEI	CTNAG	1 cut(s)	22
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSLI	GKGCMC	1 cut(s)	205
BstV2I	GAAGAC	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	47, 297
BtsCI	GGATG	1 cut(s)	220
Cfr13I	GGNCC	2 cut(s)	75, 295
CseI	GACGC	1 cut(s)	396
CviAII	CATG	2 cut(s)	65, 206
CviJI	RGCY	6 cut(s)	47, 185, 297, 302, 439, 463
CviKI_1	RGCY	6 cut(s)	47, 185, 297, 302, 439, 463
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	45
Eco130I	CCWWGG	2 cut(s)	261, 365
Eco24I	GRGCYC	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	348, 479
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRI	GAATTC	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	261, 365
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	2 cut(s)	261, 365
FaeI	CATG	2 cut(s)	68, 209
FaiI	YATR	7 cut(s)	33, 66, 99, 207, 375, 377, 422
FaqI	GGGAC	2 cut(s)	118, 362
FatI	CATG	2 cut(s)	64, 205
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	1 cut(s)	441
FspBI	CTAG	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	47, 297
HgaI	GACGC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	68, 209
HinfI	GANTC	3 cut(s)	26, 80, 361
HphI	GGTGA	1 cut(s)	352
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	25, 79, 287
Hpy188III	TCNNGA	1 cut(s)	248
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	4 cut(s)	95, 157, 323, 421
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	22
Hsp92II	CATG	2 cut(s)	68, 209
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	4 cut(s)	23, 93, 239, 300
MaeI	CTAG	1 cut(s)	299
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	3 cut(s)	228, 407, 464
MhlI	GDGCHC	3 cut(s)	205, 279, 441
MluCI	AATT	6 cut(s)	69, 117, 151, 310, 402, 466
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	3 cut(s)	31, 331, 417
MseI	TTAA	2 cut(s)	243, 305
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	68, 209
NlaIV	GGNNCC	2 cut(s)	76, 438
NspV	TTCGAA	1 cut(s)	191
PfeI	GAWTC	2 cut(s)	26, 80
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	76, 438
PspPI	GGNCC	2 cut(s)	75, 295
SaqAI	TTAA	2 cut(s)	243, 305
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	2 cut(s)	75, 295
SchI	GAGTC	1 cut(s)	370
SduI	GDGCHC	3 cut(s)	205, 279, 441
SetI	ASST	5 cut(s)	168, 304, 334, 342, 402
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	1 cut(s)	75
Sse9I	AATT	6 cut(s)	69, 117, 151, 310, 402, 466
SspMI	CTAG	1 cut(s)	299
StyI	CCWWGG	2 cut(s)	261, 365
TaqI	TCGA	3 cut(s)	121, 137, 191
TasI	AATT	6 cut(s)	69, 117, 151, 310, 402, 466
TfiI	GAWTC	2 cut(s)	26, 80
Tru1I	TTAA	2 cut(s)	243, 305
Tru9I	TTAA	2 cut(s)	243, 305
TspDTI	ATGAA	4 cut(s)	27, 81, 114, 323
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	363
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.