Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Reverse (-)

73324699 .. 73327735

Gene Structure 3037 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0615800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGACCAGGGAGGTGTTTTTGCATGTATTATTTGTAATACCTTTAGTTAGTGAGGAGCAAATTGTGTTCCCGGATATGGGACTCTGCACTTTGGATCCCTTACGCATTTCTACAACATCTCATATATCTGAAGTGGGCAAAACTACTTTTGAAGGTACTTTATCTCAGGTTGATGACACTGGGCCTTTTTGGCAGGAAGGTAGACTGAGATTAAATGTGTCCCTTTCTAGTGAATTGCAATTGGATATGAATTTTATCAACAGAAGCGTAGAAATGAAGCCACTTTTCCATGCCATTGCATTGAAGCGGTTTTATGCACATAGGTCAGGTACGCCGGAGTTGGGTCGGCCATTGTGTAATGCTGTCTTGCATCTAAAGGTTTCATACATTGTGGTGATCGGGCACAGCGCTTGTGGTGGAATTAAGGGACTCTTGTCTATTCCAGAAGATGGATCCATTTCCACTAATCATGTCACTGAACCTGCCAGGAACAACGTAAAGGCACTACACGAAGGTGCTTCCTTCCCTGAACTATGCTCTCATTGTGAAAAGACTTCGCCGTATGAGCACTACATCCATATATATAATCAGTTCCAGTCCTATGGCTTAGAGCTCCAGGGAAATGGCTTAGATCCTAGAGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

215

Amino Acids

23.93

Weight (kDa)

5.85

Isoelectric Point (pI)

42.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	121 - 170	4.5e-07	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	490
AccB7I	CCANNNNNTGG	1 cut(s)	449
AccI	GTMKAC	1 cut(s)	202
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	5 cut(s)	89, 102, 447, 460, 626
AcoI	YGGCCR	1 cut(s)	347
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	150
AfaI	GTAC	2 cut(s)	157, 331
AfeI	AGCGCT	1 cut(s)	409
AfiI	CCNNNNNNNGG	4 cut(s)	76, 77, 341, 449
AgsI	TTSAA	2 cut(s)	152, 304
AjnI	CCWGG	3 cut(s)	5, 485, 615
AleI	CACNNNNGTG	1 cut(s)	513
AluBI	AGCT	1 cut(s)	613
AluI	AGCT	1 cut(s)	613
Alw21I	GWGCWC	2 cut(s)	570, 615
AlwI	GGATC	5 cut(s)	89, 102, 447, 460, 626
Aor51HI	AGCGCT	1 cut(s)	409
AoxI	GGCC	2 cut(s)	182, 347
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	410
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	405
BamHI	GGATCC	2 cut(s)	94, 452
BanII	GRGCYC	1 cut(s)	615
Bbv12I	GWGCWC	2 cut(s)	570, 615
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	544
BciT130I	CCWGG	3 cut(s)	7, 487, 617
BcnI	CCSGG	1 cut(s)	71
BfaI	CTAG	2 cut(s)	228, 636
BfoI	RGCGCY	1 cut(s)	411
BfuAI	ACCTGC	1 cut(s)	490
BglI	GCCNNNNNGGC	1 cut(s)	190
Bme1390I	CCNGG	4 cut(s)	7, 71, 487, 617
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	96, 454
BmrFI	CCNGG	4 cut(s)	7, 71, 487, 617
BmrI	ACTGGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	379
BmuI	ACTGGG	1 cut(s)	189
BoxI	GACNNNNGTC	1 cut(s)	433
BpmI	CTGGAG	1 cut(s)	599
BpuMI	CCSGG	1 cut(s)	71
BsaJI	CCNNGG	2 cut(s)	6, 616
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 77, 341, 449
Bse1I	ACTGG	2 cut(s)	184, 595
Bse3DI	GCAATG	1 cut(s)	294
BseBI	CCWGG	3 cut(s)	7, 487, 617
BseDI	CCNNGG	2 cut(s)	6, 616
BseGI	GGATG	1 cut(s)	573
BseLI	CCNNNNNNNGG	4 cut(s)	76, 77, 341, 449
BseMI	GCAATG	1 cut(s)	294
BseMII	CTCAG	2 cut(s)	179, 197
BseNI	ACTGG	2 cut(s)	184, 595
BseRI	GAGGAG	1 cut(s)	68
BseSI	GKGCMC	1 cut(s)	405
BsgI	GTGCAG	1 cut(s)	70
BshFI	GGCC	2 cut(s)	184, 349
BsiHKAI	GWGCWC	2 cut(s)	570, 615
BsiSI	CCGG	2 cut(s)	71, 335
BslFI	GGGAC	3 cut(s)	93, 205, 441
BslI	CCNNNNNNNGG	4 cut(s)	76, 77, 341, 449
BsmFI	GGGAC	3 cut(s)	93, 205, 441
BsnI	GGCC	2 cut(s)	184, 349
Bsp1286I	GDGCHC	3 cut(s)	405, 570, 615
Bsp143I	GATC	4 cut(s)	94, 396, 452, 631
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	2 cut(s)	184, 349
BspCNI	CTCAG	2 cut(s)	178, 198
BspLI	GGNNCC	2 cut(s)	96, 454
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	5 cut(s)	89, 102, 447, 460, 626
BsrDI	GCAATG	1 cut(s)	294
BsrI	ACTGG	2 cut(s)	184, 595
BssECI	CCNNGG	2 cut(s)	6, 616
BssMI	GATC	4 cut(s)	94, 396, 452, 631
Bst2UI	CCWGG	3 cut(s)	7, 487, 617
BstDEI	CTNAG	4 cut(s)	165, 206, 607, 628
BstF5I	GGATG	1 cut(s)	573
BstH2I	RGCGCY	1 cut(s)	411
BstHHI	GCGC	1 cut(s)	410
BstKTI	GATC	4 cut(s)	97, 399, 455, 634
BstMBI	GATC	4 cut(s)	94, 396, 452, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 565
BstNI	CCWGG	3 cut(s)	7, 487, 617
BstNSI	RCATGY	1 cut(s)	26
BstPAI	GACNNNNGTC	1 cut(s)	433
BstSCI	CCNGG	4 cut(s)	5, 69, 485, 615
BstSLI	GKGCMC	1 cut(s)	405
BstX2I	RGATCY	3 cut(s)	94, 452, 631
BstXI	CCANNNNNNTGG	2 cut(s)	602, 623
BstYI	RGATCY	3 cut(s)	94, 452, 631
BsuRI	GGCC	2 cut(s)	184, 349
BtsCI	GGATG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	177, 474
BveI	ACCTGC	1 cut(s)	490
CfoI	GCGC	1 cut(s)	410
Cfr13I	GGNCC	1 cut(s)	182
Csp6I	GTAC	2 cut(s)	156, 330
CviAII	CATG	3 cut(s)	23, 290, 470
CviJI	RGCY	6 cut(s)	184, 280, 349, 606, 613, 627
CviKI_1	RGCY	6 cut(s)	184, 280, 349, 606, 613, 627
CviQI	GTAC	2 cut(s)	156, 330
DdeI	CTNAG	4 cut(s)	165, 206, 607, 628
DpnI	GATC	4 cut(s)	96, 398, 454, 633
DpnII	GATC	4 cut(s)	94, 396, 452, 631
EaeI	YGGCCR	1 cut(s)	347
Ecl136II	GAGCTC	1 cut(s)	613
Eco24I	GRGCYC	1 cut(s)	615
Eco47III	AGCGCT	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	613
EcoRII	CCWGG	3 cut(s)	5, 485, 615
EcoT38I	GRGCYC	1 cut(s)	615
FaeI	CATG	3 cut(s)	26, 293, 473
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	3 cut(s)	93, 205, 441
FatI	CATG	3 cut(s)	22, 289, 469
FblI	GTMKAC	1 cut(s)	202
FokI	GGATG	1 cut(s)	560
FriOI	GRGCYC	1 cut(s)	615
FspBI	CTAG	2 cut(s)	228, 636
GlaI	GCGC	1 cut(s)	409
GsuI	CTGGAG	1 cut(s)	599
HaeII	RGCGCY	1 cut(s)	411
HaeIII	GGCC	2 cut(s)	184, 349
HapII	CCGG	2 cut(s)	71, 335
HhaI	GCGC	1 cut(s)	410
Hin1II	CATG	3 cut(s)	26, 293, 473
Hin6I	GCGC	1 cut(s)	408
HinP1I	GCGC	1 cut(s)	408
HinfI	GANTC	2 cut(s)	81, 429
HpaII	CCGG	2 cut(s)	71, 335
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	1 cut(s)	203
HpyAV	CCTTC	4 cut(s)	146, 191, 506, 532
HpyCH4IV	ACGT	1 cut(s)	495
HpyCH4V	TGCA	6 cut(s)	22, 87, 238, 299, 317, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 565
HpyF3I	CTNAG	4 cut(s)	165, 206, 607, 628
HpySE526I	ACGT	1 cut(s)	495
Hsp92II	CATG	3 cut(s)	26, 293, 473
HspAI	GCGC	1 cut(s)	408
Kzo9I	GATC	4 cut(s)	94, 396, 452, 631
LmnI	GCTCC	2 cut(s)	55, 618
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	2 cut(s)	228, 636
MaeII	ACGT	1 cut(s)	495
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	4 cut(s)	96, 398, 454, 633
MboI	GATC	4 cut(s)	94, 396, 452, 631
MboII	GAAGA	1 cut(s)	458
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	3 cut(s)	94, 452, 631
MhlI	GDGCHC	3 cut(s)	405, 570, 615
MluCI	AATT	5 cut(s)	60, 233, 239, 250, 420
MlyI	GAGTC	2 cut(s)	75, 423
MnlI	CCTC	3 cut(s)	4, 46, 632
MseI	TTAA	2 cut(s)	212, 423
MslI	CAYNNNNRTG	2 cut(s)	392, 513
MspI	CCGG	2 cut(s)	71, 335
MspR9I	CCNGG	4 cut(s)	7, 71, 487, 617
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	3 cut(s)	7, 487, 617
MwoI	GCNNNNNNNGC	2 cut(s)	190, 565
NciI	CCSGG	1 cut(s)	71
NdeII	GATC	4 cut(s)	94, 396, 452, 631
NlaIII	CATG	3 cut(s)	26, 293, 473
NlaIV	GGNNCC	2 cut(s)	96, 454
NmuCI	GTSAC	1 cut(s)	472
NspI	RCATGY	1 cut(s)	26
OliI	CACNNNNGTG	1 cut(s)	513
PflMI	CCANNNNNTGG	1 cut(s)	449
PfoI	TCCNGGA	1 cut(s)	69
PleI	GAGTC	2 cut(s)	75, 423
PpsI	GAGTC	2 cut(s)	75, 423
PshAI	GACNNNNGTC	1 cut(s)	433
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	3 cut(s)	5, 485, 615
PspGI	CCWGG	3 cut(s)	5, 485, 615
PspN4I	GGNNCC	2 cut(s)	96, 454
PspPI	GGNCC	1 cut(s)	182
PsuI	RGATCY	3 cut(s)	94, 452, 631
RsaI	GTAC	2 cut(s)	157, 331
RsaNI	GTAC	2 cut(s)	156, 330
RseI	CAYNNNNRTG	2 cut(s)	392, 513
SacI	GAGCTC	1 cut(s)	615
SaqAI	TTAA	2 cut(s)	212, 423
Sau3AI	GATC	4 cut(s)	94, 396, 452, 631
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	2 cut(s)	75, 423
ScrFI	CCNGG	4 cut(s)	7, 71, 487, 617
SduI	GDGCHC	3 cut(s)	405, 570, 615
SfaNI	GCATC	1 cut(s)	379
SmiMI	CAYNNNNRTG	2 cut(s)	392, 513
Sse9I	AATT	5 cut(s)	60, 233, 239, 250, 420
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	2 cut(s)	228, 636
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	4 cut(s)	5, 69, 485, 615
TaiI	ACGT	1 cut(s)	498
TasI	AATT	5 cut(s)	60, 233, 239, 250, 420
Tru1I	TTAA	2 cut(s)	212, 423
Tru9I	TTAA	2 cut(s)	212, 423
TscAI	CASTG	2 cut(s)	184, 481
TseFI	GTSAC	1 cut(s)	472
Tsp45I	GTSAC	1 cut(s)	472
TspDTI	ATGAA	3 cut(s)	263, 290, 372
TspRI	CASTG	2 cut(s)	184, 481
Van91I	CCANNNNNTGG	1 cut(s)	449
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	26
XmiI	GTMKAC	1 cut(s)	202
XspI	CTAG	2 cut(s)	228, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.