Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Reverse (-)

628501 .. 629669

Gene Structure 1169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g01152.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGTATATACCACCGCACAAGCGAAACTCAAATGAAGCAGAGAGGCCAGTGCTAACTCCAGACAAGCTTGCTCCTTTATTTAAGAGAAATGTAAATGTAAGGTCATCTAAGTCTAATAATAAATGGGGTTCAAAGGTAATCTATGCAGACCGTGCTATATCGAAATGGTGGGCAGTTGGTTTGAATGATGACACCCAGTTCCCCTCTTCTGTTAATCTTGAACCCATTTCCTCGGAAACCATTGAGCACAGAATTGGAGAAAAGCCTCTAGCGTTAAGGAATTCTGATCTTGATGATGGTAATGAGGTACAATTGGACTTGCCAAAGAGCCCATGGGTATATATGGCAGATAATGTGCTTAAAGACCTACTTGAGTCTTTTGAAATTGTGAAGGAGGAAGCGAAGTCCCCAAAGTTTGAAGATCTAAAGCCTACATTGGTTGCTCGAGTTGGAAAAGTTCTTTTCCATAGGACCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

18.19

Weight (kDa)

7.92

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	43 - 160	4.6e-37	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	312
AgsI	TTSAA	5 cut(s)	135, 187, 224, 386, 422
AluBI	AGCT	1 cut(s)	70
AluI	AGCT	1 cut(s)	70
Alw21I	GWGCWC	1 cut(s)	252
Ama87I	CYCGRG	1 cut(s)	447
AoxI	GGCC	1 cut(s)	47
ApoI	RAATTY	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	447
AvaII	GGWCC	1 cut(s)	474
BanII	GRGCYC	1 cut(s)	335
Bbv12I	GWGCWC	1 cut(s)	252
BccI	CCATC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	272
BglII	AGATCT	1 cut(s)	424
Bme18I	GGWCC	1 cut(s)	474
BmeT110I	CYCGRG	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	474
BmiI	GGNNCC	1 cut(s)	476
BmrI	ACTGGG	1 cut(s)	193
BmuI	ACTGGG	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	2 cut(s)	234, 335
Bse1I	ACTGG	2 cut(s)	50, 199
BseDI	CCNNGG	2 cut(s)	234, 335
BseNI	ACTGG	2 cut(s)	50, 199
BshFI	GGCC	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	447
BslFI	GGGAC	1 cut(s)	394
BsmFI	GGGAC	1 cut(s)	394
BsnI	GGCC	1 cut(s)	49
BsoBI	CYCGRG	1 cut(s)	447
Bsp1286I	GDGCHC	2 cut(s)	252, 335
Bsp143I	GATC	2 cut(s)	289, 424
Bsp19I	CCATGG	1 cut(s)	335
BspACI	CCGC	1 cut(s)	17
BspANI	GGCC	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	476
BsrI	ACTGG	2 cut(s)	50, 199
BssECI	CCNNGG	2 cut(s)	234, 335
BssMI	GATC	2 cut(s)	289, 424
BssT1I	CCWWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	155
Bst6I	CTCTTC	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	1 cut(s)	335
BstKTI	GATC	2 cut(s)	292, 427
BstMBI	GATC	2 cut(s)	289, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BsuRI	GGCC	1 cut(s)	49
BtgI	CCRYGG	1 cut(s)	335
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	474
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	1 cut(s)	336
CviJI	RGCY	5 cut(s)	49, 70, 268, 333, 433
CviKI_1	RGCY	5 cut(s)	49, 70, 268, 333, 433
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	1 cut(s)	111
DpnI	GATC	2 cut(s)	291, 426
DpnII	GATC	2 cut(s)	289, 424
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	335
Eco24I	GRGCYC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	474
Eco88I	CYCGRG	1 cut(s)	447
EcoO109I	RGGNCCY	1 cut(s)	474
EcoRI	GAATTC	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	335
EcoT38I	GRGCYC	1 cut(s)	335
ErhI	CCWWGG	1 cut(s)	335
FaeI	CATG	1 cut(s)	339
FaiI	YATR	9 cut(s)	9, 11, 147, 161, 337, 343, 345, 347, 471
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	394
FatI	CATG	1 cut(s)	335
FriOI	GRGCYC	1 cut(s)	335
FspBI	CTAG	1 cut(s)	272
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	68
HinfI	GANTC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	238, 289
Hpy188III	TCNNGA	3 cut(s)	62, 221, 293
HpyAV	CCTTC	1 cut(s)	388
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	111
Hsp92II	CATG	1 cut(s)	339
Kzo9I	GATC	2 cut(s)	289, 424
LmnI	GCTCC	1 cut(s)	79
LpnPI	CCDG	3 cut(s)	63, 75, 212
MaeI	CTAG	1 cut(s)	272
MalI	GATC	2 cut(s)	291, 426
MboI	GATC	2 cut(s)	289, 424
MboII	GAAGA	2 cut(s)	201, 434
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	2 cut(s)	252, 335
MluCI	AATT	4 cut(s)	255, 283, 314, 387
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	433
MnlI	CCTC	6 cut(s)	39, 217, 244, 279, 301, 391
MseI	TTAA	5 cut(s)	84, 216, 278, 363, 481
MunI	CAATTG	1 cut(s)	314
MwoI	GCNNNNNNNGC	1 cut(s)	155
NcoI	CCATGG	1 cut(s)	335
NdeII	GATC	2 cut(s)	289, 424
NlaIII	CATG	1 cut(s)	339
NlaIV	GGNNCC	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	447
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PpuMI	RGGWCCY	1 cut(s)	474
Psp5II	RGGWCCY	1 cut(s)	474
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	474
PspPPI	RGGWCCY	1 cut(s)	474
PspXI	VCTCGAGB	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
SaqAI	TTAA	5 cut(s)	84, 216, 278, 363, 481
Sau3AI	GATC	2 cut(s)	289, 424
Sau96I	GGNCC	1 cut(s)	474
SchI	GAGTC	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	252, 335
SetI	ASST	5 cut(s)	72, 107, 141, 312, 372
Sfr274I	CTCGAG	1 cut(s)	447
SinI	GGWCC	1 cut(s)	474
SlaI	CTCGAG	1 cut(s)	447
SmlI	CTYRAG	2 cut(s)	374, 447
SmoI	CTYRAG	2 cut(s)	374, 447
Sse9I	AATT	4 cut(s)	255, 283, 314, 387
SsiI	CCGC	1 cut(s)	17
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	335
TaaI	ACNGT	1 cut(s)	155
TaqI	TCGA	2 cut(s)	164, 448
TasI	AATT	4 cut(s)	255, 283, 314, 387
Tru1I	TTAA	5 cut(s)	84, 216, 278, 363, 481
Tru9I	TTAA	5 cut(s)	84, 216, 278, 363, 481
TscAI	CASTG	1 cut(s)	57
TspDTI	ATGAA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	57
VpaK11BI	GGWCC	1 cut(s)	474
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	447
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.