FvH4_6g01151

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001068
Physical Location & Seq
Reverse (-)
627139 .. 628461
1323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01151.t1

Sequence Viewer

Length: 699 bp
ATGTTGAAAAATTGGAAGCAAAGATCATTTTACACAAATGTTCCTGTTTCGTATACAGAGAAGATTGTAAATGAAGTTGTCCCGAATATTGGAGTTGCTTTTGAATCGAAGAAAGATATATACCAAGTAGAGTTGGCTGATTCAACAAAGCCAGACTCAACTCTCTCCTGCAAATGCAGTGTGAAAGATGGAAAGCTACAACTGCAGAAGGCAAGATTTATAATAGTCGAACTAAACCAAGTGCGTTGTATGGTGGTGGACATATCCATCCCTAATAAGAATCTGGACCTGAGACTGATGTTAAACATGAAGAGAGTTTTAACAAGTCAGACTGATGATGAGATGCAGAGCATTAGGAATCTGGTCGATTCTGCGATTACAGATCCAGATGTGAAGGGCGGGTTGAGATGGCCCCTGGAGAAGACATCGTCTGGAAAGTACAATGTCATTAAGGTTTGGCACGTAAGAGCTAAAGCATATAAAAATCAGTCATTAAGATTTAAGGTCAGGCATGCCAATCGATTTGATTTCAGAACCTCAAGTGGGGAAGCATCTTGGGAGACCAGTCTGAGGCTGAAAAAGGTTGAATCAGAGTTAAAGGAAGAGAAGGTTGATGTCAGCTCGGTTTCTGAGATGCTGGAGGAAAATATGAAGTTCATCTGGGACAACTTCTTAACCTGTGAAAGCTTTCTCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

233

Amino Acids

26.84

Weight (kDa)

9.04

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 6 - 224 2.6e-99 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AccI GTMKAC 1 cut(s) 53
AciI CCGC 1 cut(s) 399
AclWI GGATC 1 cut(s) 377
AfaI GTAC 1 cut(s) 440
AfiI CCNNNNNNNGG 3 cut(s) 89, 543, 570
AgsI TTSAA 4 cut(s) 7, 104, 144, 587
AjnI CCWGG 1 cut(s) 414
AluBI AGCT 4 cut(s) 196, 470, 621, 687
AluI AGCT 4 cut(s) 196, 470, 621, 687
Alw26I GTCTC 2 cut(s) 286, 554
AlwI GGATC 1 cut(s) 377
AoxI GGCC 1 cut(s) 410
Asp700I GAANNNNTTC 1 cut(s) 687
AspS9I GGNCC 2 cut(s) 286, 411
AvaII GGWCC 1 cut(s) 286
BbsI GAAGAC 1 cut(s) 428
BccI CCATC 3 cut(s) 182, 275, 402
BcgI CGANNNNNNTGC 2 cut(s) 500, 534
BciT130I CCWGG 1 cut(s) 416
BcoDI GTCTC 2 cut(s) 286, 554
BfmI CTRYAG 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 286, 411
BmiI GGNNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 416
BmsI GCATC 3 cut(s) 333, 560, 624
BpiI GAAGAC 1 cut(s) 428
BpmI CTGGAG 2 cut(s) 437, 659
BpuEI CTTGAG 1 cut(s) 523
Bsa29I ATCGAT 1 cut(s) 520
BsaAI YACGTR 1 cut(s) 463
BsaI GGTCTC 1 cut(s) 554
BsaJI CCNNGG 1 cut(s) 414
Bsc4I CCNNNNNNNGG 3 cut(s) 89, 543, 570
Bse1I ACTGG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 416
BseCI ATCGAT 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 89, 543, 570
BseMII CTCAG 3 cut(s) 281, 560, 621
BseNI ACTGG 1 cut(s) 564
BshFI GGCC 1 cut(s) 412
BshVI ATCGAT 1 cut(s) 520
BslFI GGGAC 2 cut(s) 65, 677
BslI CCNNNNNNNGG 3 cut(s) 89, 543, 570
BsmAI GTCTC 2 cut(s) 286, 554
BsmFI GGGAC 2 cut(s) 65, 677
BsnI GGCC 1 cut(s) 412
Bso31I GGTCTC 1 cut(s) 554
Bsp143I GATC 2 cut(s) 23, 382
BspACI CCGC 1 cut(s) 399
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 3 cut(s) 282, 561, 622
BspDI ATCGAT 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 207
BspPI GGATC 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 554
BsrI ACTGG 1 cut(s) 564
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 2 cut(s) 23, 382
BssNAI GTATAC 1 cut(s) 54
Bst1107I GTATAC 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 416
Bst6I CTCTTC 2 cut(s) 305, 597
BstBAI YACGTR 1 cut(s) 463
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 3 cut(s) 290, 569, 630
BstF5I GGATG 1 cut(s) 267
BstKTI GATC 2 cut(s) 26, 385
BstMAI GTCTC 2 cut(s) 286, 554
BstMBI GATC 2 cut(s) 23, 382
BstMWI GCNNNNNNNGC 1 cut(s) 202
BstNI CCWGG 1 cut(s) 416
BstNSI RCATGY 1 cut(s) 515
BstSCI CCNGG 1 cut(s) 414
BstSFI CTRYAG 1 cut(s) 203
BstV2I GAAGAC 1 cut(s) 428
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BstZ17I GTATAC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 520
BsuRI GGCC 1 cut(s) 412
BsuTUI ATCGAT 1 cut(s) 520
BtsCI GGATG 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 184
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 513
Cfr13I GGNCC 2 cut(s) 286, 411
ClaI ATCGAT 1 cut(s) 520
Csp6I GTAC 1 cut(s) 439
CviAII CATG 3 cut(s) 307, 512, 696
CviJI RGCY 8 cut(s) 137, 151, 196, 412, 470, 574, 621, 687
CviKI_1 RGCY 8 cut(s) 137, 151, 196, 412, 470, 574, 621, 687
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 3 cut(s) 290, 569, 630
DpnI GATC 2 cut(s) 25, 384
DpnII GATC 2 cut(s) 23, 382
Eam1104I CTCTTC 2 cut(s) 305, 597
EarI CTCTTC 2 cut(s) 305, 597
Eco31I GGTCTC 1 cut(s) 554
Eco47I GGWCC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 414
FaeI CATG 3 cut(s) 310, 515, 699
FaqI GGGAC 2 cut(s) 65, 677
FatI CATG 3 cut(s) 306, 511, 695
FauI CCCGC 1 cut(s) 392
FblI GTMKAC 1 cut(s) 53
FokI GGATG 1 cut(s) 254
GsuI CTGGAG 2 cut(s) 437, 659
HaeIII GGCC 1 cut(s) 412
Hin1II CATG 3 cut(s) 310, 515, 699
HindIII AAGCTT 1 cut(s) 685
HinfI GANTC 7 cut(s) 104, 140, 155, 280, 358, 368, 587
Hpy166II GTNNAC 2 cut(s) 54, 259
Hpy188I TCNGA 5 cut(s) 330, 533, 570, 592, 631
Hpy188III TCNNGA 4 cut(s) 82, 284, 386, 432
Hpy8I GTNNAC 2 cut(s) 54, 259
HpyAV CCTTC 3 cut(s) 202, 388, 601
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 4 cut(s) 171, 177, 205, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 202
HpyF3I CTNAG 3 cut(s) 290, 569, 630
HpySE526I ACGT 1 cut(s) 462
Hsp92II CATG 3 cut(s) 310, 515, 699
Kzo9I GATC 2 cut(s) 23, 382
LweI GCATC 3 cut(s) 333, 560, 624
MaeII ACGT 1 cut(s) 462
MalI GATC 2 cut(s) 25, 384
MboI GATC 2 cut(s) 23, 382
MboII GAAGA 5 cut(s) 73, 121, 322, 433, 614
MflI RGATCY 1 cut(s) 382
MluCI AATT 1 cut(s) 10
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 3 cut(s) 547, 564, 634
MroXI GAANNNNTTC 1 cut(s) 687
MseI TTAA 7 cut(s) 302, 320, 450, 494, 501, 596, 674
MspR9I CCNGG 1 cut(s) 416
MvaI CCWGG 1 cut(s) 416
MwoI GCNNNNNNNGC 1 cut(s) 202
NdeII GATC 2 cut(s) 23, 382
NlaIII CATG 3 cut(s) 310, 515, 699
NlaIV GGNNCC 1 cut(s) 413
NspI RCATGY 1 cut(s) 515
PaeI GCATGC 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 6 cut(s) 104, 140, 280, 358, 368, 587
PflFI GACNNNGTC 1 cut(s) 427
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Ppu21I YACGTR 1 cut(s) 463
PsiI TTATAA 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 414
PspGI CCWGG 1 cut(s) 414
PspN4I GGNNCC 1 cut(s) 413
PspPI GGNCC 2 cut(s) 286, 411
PstI CTGCAG 1 cut(s) 207
PsuI RGATCY 1 cut(s) 382
PsyI GACNNNGTC 1 cut(s) 427
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SaqAI TTAA 7 cut(s) 302, 320, 450, 494, 501, 596, 674
Sau3AI GATC 2 cut(s) 23, 382
Sau96I GGNCC 2 cut(s) 286, 411
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 416
SfaNI GCATC 3 cut(s) 333, 560, 624
SfcI CTRYAG 1 cut(s) 203
SinI GGWCC 1 cut(s) 286
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
SphI GCATGC 1 cut(s) 515
Sse9I AATT 1 cut(s) 10
SsiI CCGC 1 cut(s) 399
SspI AATATT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 414
TaiI ACGT 1 cut(s) 465
TaqI TCGA 4 cut(s) 107, 228, 366, 520
TasI AATT 1 cut(s) 10
TatI WGTACW 1 cut(s) 438
TfiI GAWTC 6 cut(s) 104, 140, 280, 358, 368, 587
Tru1I TTAA 7 cut(s) 302, 320, 450, 494, 501, 596, 674
Tru9I TTAA 7 cut(s) 302, 320, 450, 494, 501, 596, 674
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 4 cut(s) 87, 323, 646, 665
TspRI CASTG 1 cut(s) 184
Tth111I GACNNNGTC 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 286
XceI RCATGY 1 cut(s) 515
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.