Rorug02G0615900

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001068
Physical Location & Seq
Reverse (-)
73337759 .. 73340044
2286 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0615900.1

Sequence Viewer

Length: 744 bp
ATGATGCAAGTAGCTGCTTCTAGGCCTGTAGGACCAGCTCGGATCAATGGCACATGTCTTTCTCAATCACCTGGTACTGTACAAGAACCTCTCTACAACCGTGTTCCTGGTGGTTACACTCGGCGGCATTGTGATTCGTCTCTAATAGGACTGTCTGTTTCTTTTGCTAGTATCATCCTTAGAAGTAGTTCTAAAATTGGGGTAGCAAGTGTTTTGAACATTTTGGATCACAAACTGGTTGATAATGTTGGAAGTTACATCTTAAGTTGTCAGACTTATGAGGGTAGTATATATGGGGAACCTGGTTCTGAAGCTCATGGTGGTGAACTTTTAGAGAAATGCATTTTGCTTCCTTCCCCGATCCGCTCACCTGTCAAGATGAATGTGTCATGTGTACCTGTTCTGGATTCTGTAGCAAAGCATAGATCTGACAGTATTTTCATCAGGGCGGTGTTTTTGCCTTATTACAAAAAATACCTTCAGAGTGAGGAGCAAATTGTGCTCCTGGATATGGGACTACGCACTTTGGATACGTTACGCACTTCTACATCATCTCATATATCTGAAGTGGGCAAAAATTTTGAAGGGTTAAACGTCCCCTTTCCAGTGAATTACAATGATATTGGATATGATTATATCAACAGGCGTAGAAATGAAGCCGCTTTTCCATGTCATTGCATTGCAACGGCACATACTTTTATGCACACAGTTCTATGGTTTTCTGCTGCAGTATTAACTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

27.15

Weight (kDa)

8.15

Isoelectric Point (pI)

70.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prenyltrans PF00432 67 - 109 5.1e-07 Prenyltransferase alpha-alpha toroid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 366
AciI CCGC 4 cut(s) 124, 364, 449, 660
AclWI GGATC 3 cut(s) 50, 234, 355
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 3 cut(s) 330, 464, 585
AfaI GTAC 3 cut(s) 76, 81, 396
AfiI CCNNNNNNNGG 1 cut(s) 511
AflII CTTAAG 1 cut(s) 262
AflIII ACRYGT 1 cut(s) 53
AgsI TTSAA 2 cut(s) 217, 584
AjnI CCWGG 4 cut(s) 70, 106, 301, 504
AluBI AGCT 3 cut(s) 14, 38, 314
AluI AGCT 3 cut(s) 14, 38, 314
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 3 cut(s) 50, 234, 355
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 14, 725
ApoI RAATTY 1 cut(s) 577
Asp700I GAANNNNTTC 1 cut(s) 187
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 3 cut(s) 60, 335, 360
AvaII GGWCC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 1 cut(s) 712
BceAI ACGGC 1 cut(s) 702
BciT130I CCWGG 4 cut(s) 72, 108, 303, 506
BciVI GTATCC 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 2 cut(s) 21, 168
BfmI CTRYAG 3 cut(s) 27, 411, 726
BfrI CTTAAG 1 cut(s) 262
BfuI GTATCC 1 cut(s) 523
BglII AGATCT 1 cut(s) 425
BisI GCNGC 4 cut(s) 15, 125, 660, 726
BlsI GCNGC 4 cut(s) 16, 126, 661, 727
Bme1390I CCNGG 4 cut(s) 72, 108, 303, 506
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 4 cut(s) 72, 108, 303, 506
Bsc4I CCNNNNNNNGG 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 240, 605
Bse3DI GCAATG 2 cut(s) 673, 678
BseBI CCWGG 4 cut(s) 72, 108, 303, 506
BseGI GGATG 1 cut(s) 174
BseLI CCNNNNNNNGG 1 cut(s) 511
BseMI GCAATG 2 cut(s) 673, 678
BseNI ACTGG 2 cut(s) 240, 605
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 1 cut(s) 712
BshFI GGCC 1 cut(s) 25
BsiHKAI GWGCWC 1 cut(s) 504
BslFI GGGAC 2 cut(s) 528, 581
BslI CCNNNNNNNGG 1 cut(s) 511
BsmAI GTCTC 1 cut(s) 144
BsmBI CGTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 528, 581
BsnI GGCC 1 cut(s) 25
Bsp1286I GDGCHC 1 cut(s) 504
Bsp1407I TGTACA 1 cut(s) 79
Bsp143I GATC 4 cut(s) 42, 226, 360, 425
BspACI CCGC 4 cut(s) 124, 364, 449, 660
BspANI GGCC 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 300
BspMAI CTGCAG 1 cut(s) 730
BspPI GGATC 3 cut(s) 50, 234, 355
BspTI CTTAAG 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 366
BsrDI GCAATG 2 cut(s) 673, 678
BsrGI TGTACA 1 cut(s) 79
BsrI ACTGG 2 cut(s) 240, 605
BssMI GATC 4 cut(s) 42, 226, 360, 425
Bst2UI CCWGG 4 cut(s) 72, 108, 303, 506
Bst4CI ACNGT 5 cut(s) 79, 101, 153, 434, 709
BstAFI CTTAAG 1 cut(s) 262
BstAPI GCANNNNNTGC 1 cut(s) 499
BstAUI TGTACA 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 179
BstF5I GGATG 1 cut(s) 174
BstKTI GATC 4 cut(s) 45, 229, 363, 428
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 4 cut(s) 42, 226, 360, 425
BstMWI GCNNNNNNNGC 1 cut(s) 499
BstNI CCWGG 4 cut(s) 72, 108, 303, 506
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 4 cut(s) 70, 106, 301, 504
BstSFI CTRYAG 3 cut(s) 27, 411, 726
BstV1I GCAGC 1 cut(s) 712
BstX2I RGATCY 1 cut(s) 425
BstYI RGATCY 1 cut(s) 425
BsuI GTATCC 1 cut(s) 523
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 174
BtsIMutI CAGTG 1 cut(s) 612
Cfr13I GGNCC 1 cut(s) 32
CsiI ACCWGGT 2 cut(s) 70, 301
Csp6I GTAC 3 cut(s) 75, 80, 395
CviAII CATG 4 cut(s) 54, 317, 390, 669
CviJI RGCY 5 cut(s) 14, 25, 38, 314, 659
CviKI_1 RGCY 5 cut(s) 14, 25, 38, 314, 659
CviQI GTAC 3 cut(s) 75, 80, 395
DdeI CTNAG 1 cut(s) 179
DpnI GATC 4 cut(s) 44, 228, 362, 427
DpnII GATC 4 cut(s) 42, 226, 360, 425
Eco147I AGGCCT 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 3 cut(s) 330, 464, 585
EcoRII CCWGG 4 cut(s) 70, 106, 301, 504
EcoT22I ATGCAT 1 cut(s) 344
Esp3I CGTCTC 1 cut(s) 144
FaeI CATG 4 cut(s) 57, 320, 393, 672
FaqI GGGAC 2 cut(s) 528, 581
FatI CATG 4 cut(s) 53, 316, 389, 668
Fnu4HI GCNGC 4 cut(s) 15, 125, 660, 726
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 4 cut(s) 15, 125, 660, 726
FspBI CTAG 2 cut(s) 21, 168
GluI GCNGC 4 cut(s) 15, 125, 660, 726
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 4 cut(s) 57, 320, 393, 672
HinfI GANTC 2 cut(s) 134, 407
HphI GGTGA 3 cut(s) 60, 335, 360
Hpy166II GTNNAC 2 cut(s) 326, 395
Hpy188I TCNGA 6 cut(s) 42, 273, 310, 430, 483, 565
Hpy188III TCNNGA 2 cut(s) 376, 404
Hpy8I GTNNAC 2 cut(s) 326, 395
HpyAV CCTTC 3 cut(s) 363, 488, 578
HpyCH4III ACNGT 5 cut(s) 79, 101, 153, 434, 709
HpyCH4IV ACGT 2 cut(s) 533, 594
HpyCH4V TGCA 6 cut(s) 7, 342, 678, 683, 703, 728
HpyF10VI GCNNNNNNNGC 1 cut(s) 499
HpyF3I CTNAG 1 cut(s) 179
HpySE526I ACGT 2 cut(s) 533, 594
Hsp92II CATG 4 cut(s) 57, 320, 393, 672
Kzo9I GATC 4 cut(s) 42, 226, 360, 425
LmnI GCTCC 2 cut(s) 490, 507
Lsp1109I GCAGC 1 cut(s) 712
MabI ACCWGGT 2 cut(s) 70, 301
MaeI CTAG 2 cut(s) 21, 168
MaeII ACGT 2 cut(s) 533, 594
MaeIII GTNAC 3 cut(s) 113, 254, 534
MalI GATC 4 cut(s) 44, 228, 362, 427
MbiI CCGCTC 1 cut(s) 366
MboI GATC 4 cut(s) 42, 226, 360, 425
MflI RGATCY 1 cut(s) 425
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 4 cut(s) 195, 495, 577, 610
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 3 cut(s) 99, 274, 481
Mph1103I ATGCAT 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 3 cut(s) 263, 590, 734
MslI CAYNNNNRTG 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 262
MspR9I CCNGG 4 cut(s) 72, 108, 303, 506
MvaI CCWGG 4 cut(s) 72, 108, 303, 506
MwoI GCNNNNNNNGC 1 cut(s) 499
NdeII GATC 4 cut(s) 42, 226, 360, 425
NlaIII CATG 4 cut(s) 57, 320, 393, 672
NlaIV GGNNCC 1 cut(s) 300
NmeAIII GCCGAG 1 cut(s) 100
NsiI ATGCAT 1 cut(s) 344
NspI RCATGY 1 cut(s) 57
PceI AGGCCT 1 cut(s) 25
PciI ACATGT 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 2 cut(s) 134, 407
PfoI TCCNGGA 1 cut(s) 504
PkrI GCNGC 4 cut(s) 16, 126, 661, 727
PscI ACATGT 1 cut(s) 53
Psp6I CCWGG 4 cut(s) 70, 106, 301, 504
PspGI CCWGG 4 cut(s) 70, 106, 301, 504
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 730
PsuI RGATCY 1 cut(s) 425
RsaI GTAC 3 cut(s) 76, 81, 396
RsaNI GTAC 3 cut(s) 75, 80, 395
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 3 cut(s) 263, 590, 734
SatI GCNGC 4 cut(s) 15, 125, 660, 726
Sau3AI GATC 4 cut(s) 42, 226, 360, 425
Sau96I GGNCC 1 cut(s) 32
ScrFI CCNGG 4 cut(s) 72, 108, 303, 506
SduI GDGCHC 1 cut(s) 504
SexAI ACCWGGT 2 cut(s) 70, 301
SfcI CTRYAG 3 cut(s) 27, 411, 726
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
Sse9I AATT 4 cut(s) 195, 495, 577, 610
SseBI AGGCCT 1 cut(s) 25
SsiI CCGC 4 cut(s) 124, 364, 449, 660
SspMI CTAG 2 cut(s) 21, 168
StuI AGGCCT 1 cut(s) 25
StyD4I CCNGG 4 cut(s) 70, 106, 301, 504
TaaI ACNGT 5 cut(s) 79, 101, 153, 434, 709
TaiI ACGT 2 cut(s) 536, 597
TasI AATT 4 cut(s) 195, 495, 577, 610
TatI WGTACW 1 cut(s) 79
TauI GCSGC 2 cut(s) 127, 662
TfiI GAWTC 2 cut(s) 134, 407
Tru1I TTAA 3 cut(s) 263, 590, 734
Tru9I TTAA 3 cut(s) 263, 590, 734
TscAI CASTG 1 cut(s) 612
TseI GCWGC 2 cut(s) 14, 725
TspDTI ATGAA 3 cut(s) 395, 430, 669
TspRI CASTG 1 cut(s) 612
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 1 cut(s) 577
XceI RCATGY 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 187
XspI CTAG 2 cut(s) 21, 168
Zsp2I ATGCAT 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.