Rroxscaffold_3G00247840

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001068
Physical Location & Seq
Forward (+)
41204553 .. 41209716
5164 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00247840.1

Sequence Viewer

Length: 594 bp
ATGAATTTCGGTCTTGCTGCTGAAGGTAGTGAGGTGAAATGGGACTTGCCAAAGGGTCCTTGGGTGTATATAGCAGAGAATGTGCTTGAAGACCTATTTGCGTCTTTTGACAATATGAGGAAGGAAATGGAGTCCCCAAAGTTAGAACAACTGAAGCCTAATTTGGTTGCTCGAGTAGGAAAAGTTCTCTTCCATAGAAGCCCTTCGCTTAACCGGGAATCTCGTAAAAACTTGACTACAAATATGTTGAAAAATTGGAAGAGATCATTTTACACAAATGTTCCCGTTTCCTATACGGAGAAGATTGTAAACGAAGTTGTCCGGAATATTGGGGTTGATCTTGAATGGGAGAAAGATATGTACCAACTTGCCTATGGAAACAACATGTATCATATTGGCGAAACCCTCAATACACCGATAAGACTTCTTTTCACAGCTATGATCGATGGTTGCACTACTTGGATCATTTTTCTGGGATCTTGGCTCCAAAAGAAGCTTATATTTTTGGGTTTATATCTAATTTTCTCGAAAATTTACTTGCTTGAGAAGGAAAAGGCTAAGAAGAAAGAACCATTAGAGCAAGTGCAACCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

23.03

Weight (kDa)

9.01

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 6 - 123 2e-37 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 321
AclWI GGATC 2 cut(s) 470, 484
AcsI RAATTY 2 cut(s) 4, 531
AcuI CTGAAG 2 cut(s) 42, 173
AfaI GTAC 1 cut(s) 362
AflIII ACRYGT 1 cut(s) 384
AgsI TTSAA 3 cut(s) 89, 250, 344
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AluBI AGCT 2 cut(s) 437, 496
AluI AGCT 2 cut(s) 437, 496
AlwI GGATC 2 cut(s) 470, 484
Ama87I CYCGRG 1 cut(s) 171
Aor13HI TCCGGA 1 cut(s) 321
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 2 cut(s) 4, 531
Asp700I GAANNNNTTC 1 cut(s) 202
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 171
AvaII GGWCC 1 cut(s) 56
BbsI GAAGAC 1 cut(s) 96
BbvI GCAGC 1 cut(s) 4
BccI CCATC 1 cut(s) 440
BcnI CCSGG 1 cut(s) 215
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 215
Bme18I GGWCC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 57, 485
BmrFI CCNGG 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 563
BpuMI CCSGG 1 cut(s) 215
Bsa29I ATCGAT 1 cut(s) 444
BsaJI CCNNGG 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 321
BseCI ATCGAT 1 cut(s) 444
BseDI CCNNGG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 4
BshVI ATCGAT 1 cut(s) 444
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 2 cut(s) 214, 322
BslFI GGGAC 2 cut(s) 56, 118
BsmFI GGGAC 2 cut(s) 56, 118
BsoBI CYCGRG 1 cut(s) 171
Bsp13I TCCGGA 1 cut(s) 321
Bsp143I GATC 5 cut(s) 263, 337, 441, 462, 476
BspDI ATCGAT 1 cut(s) 444
BspEI TCCGGA 1 cut(s) 321
BspLI GGNNCC 2 cut(s) 57, 485
BspPI GGATC 2 cut(s) 470, 484
BssECI CCNNGG 1 cut(s) 59
BssMI GATC 5 cut(s) 263, 337, 441, 462, 476
BssT1I CCWWGG 1 cut(s) 59
Bst6I CTCTTC 2 cut(s) 194, 254
BstDEI CTNAG 1 cut(s) 558
BstKTI GATC 5 cut(s) 266, 340, 444, 465, 479
BstMBI GATC 5 cut(s) 263, 337, 441, 462, 476
BstNSI RCATGY 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 96
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
Bsu15I ATCGAT 1 cut(s) 444
BsuTUI ATCGAT 1 cut(s) 444
Cfr13I GGNCC 1 cut(s) 56
ClaI ATCGAT 1 cut(s) 444
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 361
CviAII CATG 1 cut(s) 385
CviJI RGCY 6 cut(s) 157, 201, 437, 484, 496, 557
CviKI_1 RGCY 6 cut(s) 157, 201, 437, 484, 496, 557
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 1 cut(s) 558
DpnI GATC 5 cut(s) 265, 339, 443, 464, 478
DpnII GATC 5 cut(s) 263, 337, 441, 462, 476
Eam1104I CTCTTC 2 cut(s) 194, 254
EarI CTCTTC 2 cut(s) 194, 254
Eco130I CCWWGG 1 cut(s) 59
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 42, 173
Eco88I CYCGRG 1 cut(s) 171
EcoO109I RGGNCCY 1 cut(s) 56
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 1 cut(s) 388
FaqI GGGAC 2 cut(s) 56, 118
FatI CATG 1 cut(s) 384
Fnu4HI GCNGC 1 cut(s) 18
Fsp4HI GCNGC 1 cut(s) 18
GluI GCNGC 1 cut(s) 18
HapII CCGG 2 cut(s) 214, 322
HgaI GACGC 1 cut(s) 90
Hin1II CATG 1 cut(s) 388
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 2 cut(s) 131, 218
HpaII CCGG 2 cut(s) 214, 322
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 310
Hpy188III TCNNGA 3 cut(s) 322, 341, 526
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 4 cut(s) 17, 115, 213, 541
HpyCH4V TGCA 2 cut(s) 453, 586
HpyF3I CTNAG 1 cut(s) 558
Hsp92II CATG 1 cut(s) 388
Kpn2I TCCGGA 1 cut(s) 321
Kzo9I GATC 5 cut(s) 263, 337, 441, 462, 476
LmnI GCTCC 1 cut(s) 489
LpnPI CCDG 3 cut(s) 227, 335, 458
Lsp1109I GCAGC 1 cut(s) 4
MalI GATC 5 cut(s) 265, 339, 443, 464, 478
MboI GATC 5 cut(s) 263, 337, 441, 462, 476
MboII GAAGA 5 cut(s) 101, 181, 271, 313, 574
MflI RGATCY 1 cut(s) 476
MluCI AATT 5 cut(s) 4, 160, 253, 519, 531
MlyI GAGTC 1 cut(s) 140
MnlI CCTC 3 cut(s) 25, 111, 416
MroI TCCGGA 1 cut(s) 321
MroXI GAANNNNTTC 1 cut(s) 202
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 437
MspI CCGG 2 cut(s) 214, 322
MspR9I CCNGG 1 cut(s) 215
NciI CCSGG 1 cut(s) 215
NdeII GATC 5 cut(s) 263, 337, 441, 462, 476
NlaIII CATG 1 cut(s) 388
NlaIV GGNNCC 2 cut(s) 57, 485
NspI RCATGY 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 171
PciI ACATGT 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 202
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 139
PpsI GAGTC 1 cut(s) 139
PpuMI RGGWCCY 1 cut(s) 56
PscI ACATGT 1 cut(s) 384
Psp5II RGGWCCY 1 cut(s) 56
PspN4I GGNNCC 2 cut(s) 57, 485
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
PspXI VCTCGAGB 1 cut(s) 171
PsrI GAACNNNNNNTAC 2 cut(s) 168, 200
PsuI RGATCY 1 cut(s) 476
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 437
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 5 cut(s) 263, 337, 441, 462, 476
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 1 cut(s) 215
SetI ASST 5 cut(s) 28, 36, 96, 439, 498
Sfr274I CTCGAG 1 cut(s) 171
SinI GGWCC 1 cut(s) 56
SlaI CTCGAG 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 437
SmlI CTYRAG 2 cut(s) 171, 542
SmoI CTYRAG 2 cut(s) 171, 542
Sse9I AATT 5 cut(s) 4, 160, 253, 519, 531
SspI AATATT 1 cut(s) 328
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 59
TaqI TCGA 3 cut(s) 172, 444, 527
TasI AATT 5 cut(s) 4, 160, 253, 519, 531
TfiI GAWTC 1 cut(s) 218
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 2 cut(s) 4, 531
XceI RCATGY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 2 cut(s) 57, 371
XhoI CTCGAG 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.