pycom04g20940

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
22353676 .. 22354005
330 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g20940.1

Sequence Viewer

Length: 330 bp
ATGGCTTACATTCCACCACACAAGCGGTACTCGAAGGAACCGGAGAGGCCATTGCTGACTCCAGAGCTGCTTGCTCCTCAATTCAAGAAAAACTTAAACGTCAAGCCATATAATAAGTCTAATGTGGAATCGACTGTAAAAATAGTTTATGCAGATCATTCTACATCGAGAGGGCTCACCATTGGTTTGGATGACGATAACCAATTTTTGCCTTCTGTTAATCTTATGCCCATTTACTTGGAGTCCAATGAGCCGAAAATTGGAGAAAACCGTCTAGCTTTAATCAATACTAGTCTAGATAACGGTTGGTACTCTAATATTTCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.42

Weight (kDa)

6.72

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 44 - 101 1e-09 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AfaI GTAC 2 cut(s) 29, 311
AfiI CCNNNNNNNGG 1 cut(s) 260
AgsI TTSAA 1 cut(s) 85
AhlI ACTAGT 1 cut(s) 290
AluBI AGCT 2 cut(s) 67, 278
AluI AGCT 2 cut(s) 67, 278
AoxI GGCC 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 169
BanII GRGCYC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 54
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 3 cut(s) 275, 291, 296
BisI GCNGC 1 cut(s) 68
BlsI GCNGC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 45
BsaWI WCCGGW 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 50
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 260
BseMI GCAATG 1 cut(s) 50
BseRI GAGGAG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 49
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 1 cut(s) 260
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 177
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 25
BspANI GGCC 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 50
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 3 cut(s) 136, 272, 305
BstC8I GCNNGC 1 cut(s) 72
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 54
BstXI CCANNNNNNTGG 2 cut(s) 187, 238
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 28, 310
CviJI RGCY 7 cut(s) 5, 49, 67, 106, 175, 253, 278
CviKI_1 RGCY 7 cut(s) 5, 49, 67, 106, 175, 253, 278
CviQI GTAC 2 cut(s) 28, 310
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco24I GRGCYC 1 cut(s) 177
EcoT38I GRGCYC 1 cut(s) 177
FaiI YATR 4 cut(s) 109, 111, 150, 227
FalI AAGNNNNNCTT 2 cut(s) 77, 109
Fnu4HI GCNGC 1 cut(s) 68
FokI GGATG 1 cut(s) 203
FriOI GRGCYC 1 cut(s) 177
Fsp4HI GCNGC 1 cut(s) 68
FspBI CTAG 3 cut(s) 275, 291, 296
GluI GCNGC 1 cut(s) 68
GsuI CTGGAG 1 cut(s) 45
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 41
HinfI GANTC 3 cut(s) 58, 128, 242
HpaII CCGG 1 cut(s) 41
HphI GGTGA 1 cut(s) 169
Hpy188III TCNNGA 4 cut(s) 62, 85, 168, 296
HpyAV CCTTC 2 cut(s) 28, 222
HpyCH4III ACNGT 3 cut(s) 136, 272, 305
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 99
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 2 cut(s) 54, 75
Lsp1109I GCAGC 1 cut(s) 54
MaeI CTAG 3 cut(s) 275, 291, 296
MaeII ACGT 1 cut(s) 99
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 177
MluCI AATT 3 cut(s) 80, 203, 258
MlyI GAGTC 2 cut(s) 52, 251
MnlI CCTC 3 cut(s) 39, 87, 164
MseI TTAA 3 cut(s) 95, 219, 281
MspI CCGG 1 cut(s) 41
NdeII GATC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 39
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 1 cut(s) 69
PleI GAGTC 2 cut(s) 52, 250
PpsI GAGTC 2 cut(s) 52, 250
PspN4I GGNNCC 1 cut(s) 39
RsaI GTAC 2 cut(s) 29, 311
RsaNI GTAC 2 cut(s) 28, 310
SaqAI TTAA 3 cut(s) 95, 219, 281
SatI GCNGC 1 cut(s) 68
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 2 cut(s) 52, 251
SduI GDGCHC 1 cut(s) 177
SetI ASST 3 cut(s) 69, 102, 280
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 3 cut(s) 80, 203, 258
SsiI CCGC 1 cut(s) 25
SspI AATATT 1 cut(s) 319
SspMI CTAG 3 cut(s) 275, 291, 296
TaaI ACNGT 3 cut(s) 136, 272, 305
TaiI ACGT 1 cut(s) 102
TaqI TCGA 3 cut(s) 32, 131, 167
TasI AATT 3 cut(s) 80, 203, 258
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 3 cut(s) 95, 219, 281
Tru9I TTAA 3 cut(s) 95, 219, 281
TseI GCWGC 1 cut(s) 67
XbaI TCTAGA 1 cut(s) 295
XspI CTAG 3 cut(s) 275, 291, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.