Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001068

Physical Location & Seq

Genomic Coordinates Forward (+)

32248408 .. 32250192

Gene Structure 1785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1253900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGTGTGGAGAGCATGAAGAATTTCAACTGAATTTGGTTGCTAAAGTGGGAAAATTTCTGTTTCATAGGACCCCTTCGATGAACCTGGAATCTATAAGGGAAGGTTTGGATACTGAAACCTTGATAAAATTGAAGAAGTCTTTTTATGCAAACGTTCCGTTGTCGTATAAGGAAAACATTGTAAAGGAAGTTGTCCCTAAGATTTGTGTTGAGCTCAAAGGGAAGAACGAGTTATACTATGTAAAGTTGTCTGACTCTAGACGACCAAAATCAATCATCACTTGCAAATGCAGTGTAGCAAAAGAACATGGAAAACTACAACTATGCAAGATGGAGCTGGATCCACTGCGTTACATGGTCACGAACATACCATGCCTTAATAAAAATTTGGACCTCAGACTCATGCTATGCACGAAGAAGATCGTAACAGCTTTCGCTGGAGGGTTGAGATGGCCACTAGGGAAAGCGTTTTCTGGAGGCCGGTATAATGTCGTTGGAATTTGGCATACATTTACCACTACTTATGAAAATCCATCTCTGAAACTAAAGTTAAGGCATGCGAATCGCTTCGATTTTACAACCTCAGCTGGTGAAACTGGTTGGGAGGTTAGGCTGTTTCTGAAAATGCTCGTTTCAAAGTTACACGAGGAGAATGTTGAAGTCGGCTTGATTTCTGATATGCTGCAGGAGAATGTGAAGTTGATATGGGACAACTTCTTATGCTGTGAACCTTTTCTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

28.53

Weight (kDa)

8.96

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7903	PF25475	2 - 145	6e-52	Domain of unknown function (DUF7903)
DUF7903	PF25475	147 - 240	2.9e-38	Domain of unknown function (DUF7903)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38430
fragaria_vesca	FvH4_6g01151 FvH4_6g01152 FvH4_6g01160
malus_domestica	MD04G1235900.v1.1 MD12G1253500.v1.1 MD12G1253600.v1.1 MD12G1253900.v1.1 MD12G1254000.v1.1 MD12G1254300.v1.1 MD12G1254400.v1.1 MD12G1254500.v1.1 MD12G1254700.v1.1 MD12G1254800.v1.1 MD12G1254900.v1.1
prunus_persica	Prupe.6G355800_v2.0.a1
pyrus_communis	pycom04g20940 pycom04g20960 pycom12g23260 pycom12g23270 pycom12g23280 pycom12g23290 pycom12g23300 pycom12g23320 pycom12g23330 pycom12g23340 pycom12g23350
rosa_chinensis	RchiOBHm_Chr3g0448691 RchiOBHm_Chr3g0448711
rosa_laevigata	RLG00000025878 RLG00000025879
rosa_multiflora	Rmu_co8127328.1_g000001 Rmu_co8209414.1_g000001 Rmu_sc0003116.1_g000032 Rmu_sc0017810.1_g000003 Rmu_sc0017810.1_g000004 Rmu_sc0027086.1_g000004
rosa_roxburghii	Rroxscaffold_3G00247840 Rroxscaffold_6G00426960 Rroxscaffold_6G00426980 Rroxscaffold_7G00204450
rosa_rugosa	Rorug02G0615400 Rorug02G0615400 Rorug02G0615500 Rorug02G0615600 Rorug02G0615700 Rorug02G0615800 Rorug02G0615900 Rorug02G0616000 Rorug02G0616000 Rorug02G0616100
rosa_samantha	Rh3AG014200 Rh3AG014300 Rh3BG014000 Rh3BG014100 Rh3CG013000 Rh3CG013100 Rh3DG014700
rosa_wichuraiana	Rw3G001050 Rw3G001060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	156
AclWI	GGATC	2 cut(s)	338, 351
AcoI	YGGCCR	1 cut(s)	455
AcsI	RAATTY	5 cut(s)	23, 34, 56, 388, 501
AgsI	TTSAA	4 cut(s)	29, 136, 639, 662
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	4 cut(s)	217, 340, 434, 590
AluI	AGCT	4 cut(s)	217, 340, 434, 590
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	2 cut(s)	338, 351
AoxI	GGCC	2 cut(s)	455, 481
ApeKI	GCWGC	1 cut(s)	685
ApoI	RAATTY	5 cut(s)	23, 34, 56, 388, 501
Asp700I	GAANNNNTTC	3 cut(s)	24, 569, 735
AspS9I	GGNCC	2 cut(s)	72, 394
AsuHPI	GGTGA	1 cut(s)	605
AvaII	GGWCC	2 cut(s)	72, 394
BalI	TGGCCA	1 cut(s)	457
BamHI	GGATCC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	647
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	586
BbvI	GCAGC	1 cut(s)	672
BccI	CCATC	3 cut(s)	328, 447, 544
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	1 cut(s)	89
BciVI	GTATCC	1 cut(s)	106
BfaI	CTAG	2 cut(s)	261, 461
BfmI	CTRYAG	1 cut(s)	686
BfuI	GTATCC	1 cut(s)	106
BisI	GCNGC	1 cut(s)	686
BlsI	GCNGC	1 cut(s)	687
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	2 cut(s)	72, 394
BmgT120I	GGNCC	2 cut(s)	72, 394
BmiI	GGNNCC	2 cut(s)	74, 345
BmrFI	CCNGG	1 cut(s)	89
BpmI	CTGGAG	2 cut(s)	462, 498
Bpu10I	CCTNAGC	1 cut(s)	586
Bse118I	RCCGGY	1 cut(s)	483
Bse1I	ACTGG	1 cut(s)	604
BseBI	CCWGG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	412, 600
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	1 cut(s)	665
BseXI	GCAGC	1 cut(s)	672
BshFI	GGCC	2 cut(s)	457, 483
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	484
BslFI	GGGAC	2 cut(s)	182, 725
BsmFI	GGGAC	2 cut(s)	182, 725
BsnI	GGCC	2 cut(s)	457, 483
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	2 cut(s)	343, 423
BspANI	GGCC	2 cut(s)	457, 483
BspCNI	CTCAG	2 cut(s)	411, 599
BspLI	GGNNCC	2 cut(s)	74, 345
BspMAI	CTGCAG	1 cut(s)	690
BspPI	GGATC	2 cut(s)	338, 351
BsrFI	RCCGGY	1 cut(s)	483
BsrI	ACTGG	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	483
BssMI	GATC	2 cut(s)	343, 423
BssSI	CACGAG	1 cut(s)	647
Bst2BI	CACGAG	1 cut(s)	647
Bst2UI	CCWGG	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	561
BstDEI	CTNAG	3 cut(s)	201, 398, 586
BstKTI	GATC	2 cut(s)	346, 426
BstMBI	GATC	2 cut(s)	343, 423
BstNI	CCWGG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	87
BstSFI	CTRYAG	1 cut(s)	686
BstV1I	GCAGC	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	457, 483
BtsI	GCAGTG	2 cut(s)	301, 347
BtsIMutI	CAGTG	2 cut(s)	301, 347
Cac8I	GCNNGC	1 cut(s)	561
Cfr10I	RCCGGY	1 cut(s)	483
Cfr13I	GGNCC	2 cut(s)	72, 394
CviAII	CATG	7 cut(s)	17, 311, 358, 375, 406, 560, 744
CviJI	RGCY	8 cut(s)	217, 340, 434, 457, 483, 590, 616, 669
CviKI_1	RGCY	8 cut(s)	217, 340, 434, 457, 483, 590, 616, 669
DdeI	CTNAG	3 cut(s)	201, 398, 586
DpnI	GATC	2 cut(s)	345, 425
DpnII	GATC	2 cut(s)	343, 423
EaeI	YGGCCR	1 cut(s)	455
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco47I	GGWCC	2 cut(s)	72, 394
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	87
EcoT38I	GRGCYC	1 cut(s)	219
FaeI	CATG	7 cut(s)	20, 314, 361, 378, 409, 563, 747
FaqI	GGGAC	2 cut(s)	182, 725
FatI	CATG	7 cut(s)	16, 310, 357, 374, 405, 559, 743
Fnu4HI	GCNGC	1 cut(s)	686
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	1 cut(s)	686
FspBI	CTAG	2 cut(s)	261, 461
GluI	GCNGC	1 cut(s)	686
GsuI	CTGGAG	2 cut(s)	462, 498
HaeIII	GGCC	2 cut(s)	457, 483
HapII	CCGG	1 cut(s)	484
Hin1II	CATG	7 cut(s)	20, 314, 361, 378, 409, 563, 747
HinfI	GANTC	4 cut(s)	92, 257, 402, 565
HpaII	CCGG	1 cut(s)	484
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	5 cut(s)	256, 401, 543, 624, 679
Hpy188III	TCNNGA	3 cut(s)	261, 364, 477
Hpy8I	GTNNAC	1 cut(s)	731
HpyAV	CCTTC	2 cut(s)	87, 98
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	6 cut(s)	152, 288, 294, 330, 414, 688
HpyF3I	CTNAG	3 cut(s)	201, 398, 586
HpySE526I	ACGT	1 cut(s)	156
Hsp92II	CATG	7 cut(s)	20, 314, 361, 378, 409, 563, 747
Kzo9I	GATC	2 cut(s)	343, 423
LmnI	GCTCC	1 cut(s)	337
LpnPI	CCDG	9 cut(s)	74, 101, 326, 426, 462, 497, 576, 585, 674
Lsp1109I	GCAGC	1 cut(s)	672
MaeI	CTAG	2 cut(s)	261, 461
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	4 cut(s)	353, 361, 427, 642
MalI	GATC	2 cut(s)	345, 425
MboI	GATC	2 cut(s)	343, 423
MboII	GAAGA	5 cut(s)	32, 148, 238, 430, 433
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	1 cut(s)	219
MlsI	TGGCCA	1 cut(s)	457
MluCI	AATT	6 cut(s)	23, 34, 56, 131, 388, 501
MluNI	TGGCCA	1 cut(s)	457
MlyI	GAGTC	2 cut(s)	251, 396
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	6 cut(s)	407, 437, 473, 595, 601, 643
Mox20I	TGGCCA	1 cut(s)	457
MroXI	GAANNNNTTC	3 cut(s)	24, 569, 735
MscI	TGGCCA	1 cut(s)	457
MseI	TTAA	2 cut(s)	381, 554
Msp20I	TGGCCA	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	590
MspI	CCGG	1 cut(s)	484
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
NdeII	GATC	2 cut(s)	343, 423
NlaIII	CATG	7 cut(s)	20, 314, 361, 378, 409, 563, 747
NlaIV	GGNNCC	2 cut(s)	74, 345
NmuCI	GTSAC	1 cut(s)	361
NspI	RCATGY	1 cut(s)	563
PaeI	GCATGC	1 cut(s)	563
PdmI	GAANNNNTTC	3 cut(s)	24, 569, 735
PfeI	GAWTC	2 cut(s)	92, 565
PkrI	GCNGC	1 cut(s)	687
PleI	GAGTC	2 cut(s)	251, 396
PpsI	GAGTC	2 cut(s)	251, 396
PpuMI	RGGWCCY	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	72
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspN4I	GGNNCC	2 cut(s)	74, 345
PspPI	GGNCC	2 cut(s)	72, 394
PspPPI	RGGWCCY	1 cut(s)	72
PsrI	GAACNNNNNNTAC	2 cut(s)	221, 253
PstI	CTGCAG	1 cut(s)	690
PsuI	RGATCY	1 cut(s)	343
PvuII	CAGCTG	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	381, 554
SatI	GCNGC	1 cut(s)	686
Sau3AI	GATC	2 cut(s)	343, 423
Sau96I	GGNCC	2 cut(s)	72, 394
SchI	GAGTC	2 cut(s)	251, 396
ScrFI	CCNGG	1 cut(s)	89
SduI	GDGCHC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	686
SinI	GGWCC	2 cut(s)	72, 394
SphI	GCATGC	1 cut(s)	563
Sse9I	AATT	6 cut(s)	23, 34, 56, 131, 388, 501
SspMI	CTAG	2 cut(s)	261, 461
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	87
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	2 cut(s)	80, 573
TasI	AATT	6 cut(s)	23, 34, 56, 131, 388, 501
TfiI	GAWTC	2 cut(s)	92, 565
Tru1I	TTAA	2 cut(s)	381, 554
Tru9I	TTAA	2 cut(s)	381, 554
TscAI	CASTG	2 cut(s)	301, 354
TseFI	GTSAC	1 cut(s)	361
TseI	GCWGC	1 cut(s)	685
Tsp45I	GTSAC	1 cut(s)	361
TspDTI	ATGAA	4 cut(s)	33, 56, 98, 543
TspGWI	ACGGA	1 cut(s)	150
TspRI	CASTG	2 cut(s)	301, 354
VpaK11BI	GGWCC	2 cut(s)	72, 394
XapI	RAATTY	5 cut(s)	23, 34, 56, 388, 501
XbaI	TCTAGA	1 cut(s)	260
XceI	RCATGY	1 cut(s)	563
XmnI	GAANNNNTTC	3 cut(s)	24, 569, 735
XspI	CTAG	2 cut(s)	261, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.