Rorug02G0616000

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001068
Physical Location & Seq
Forward (+)
73348666 .. 73351496
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0616000.1

Sequence Viewer

Length: 1023 bp
ATGATGGCCACCACACCCAAAAACCTCGAAGAACTGAAGCTGTCAACAGATCTCAAGTCTAAGAAGGCTTGCCTGAGAGATGTGTTTGAAAGCGTTGTTTATAGAATGTCCAACCTAGGCATCGACAGTGGATCGTTGGATCCCAAACTCATCCAGATTGTGCACGGGAGAGCCTATCTGCCCGAGGACGTGGTTGAAGCAGGAGGCTCACTGCCACTCTACCTTCCCGCGCTGAAGAACCTTGTGATCGATGTGCACGCCCAAGACCATGAACTGATGAGTCCAAGGGAGCGGTTGCAGTACGATGATTTTAAGCTGTACTTGGATAGACTCATCACTGTGAGACATCTGGAAATGATATGTGTACATCCACATTTTCATACAGCAGCAGAAGAACTACAGTTTATACAGAGAGCACGCATGAGGTTATTCGCCATTCCTGAAAATCCTAACTACATACCCAAACATCCAAAAGAAAATAGAAAGCGCCACTTCCCAAAACTCATCAGTGGCCATCATCAAGTTAATCCATCTCAAGCATCAACAGATCCAAATTTAATGAAATGGGAGAAAGCTTATGATGTGATGGTGAAGGAGACTAGACAAGTGAACATTAAGCAATCCATTTCAGGACTTGCCCCTGAGTTTCATCAAATTTACAAAGATGGAATGATGCGCACAAGAAAAACAGCTGGAGGATACCAAGATAAGGATGCTGCTGATGAGGTGCATTACTTTTGCAATACAATGAAGCACATTTGGAAGAAATTTCCCAAGGATCCCCGGGGTTTAAAAACTTATGATAAAGCTAAACATAACCTTGAAGCTACACTTGCCGCATTGCATCACATGTCGCCAACAATTCCGATAGAAATGTTTCGATTTTTCTGGCGCTATGATGGATACGCTTCAGGAATCATTTCTCTTAACTTTTTCAGGGACAGCAGGATTTCTTATGAGGAGGGCGACCTTGTGTTTGGGGAGACTAGTGAAGACCTTGGGGAGACCAGAGAAGAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

340

Amino Acids

39.46

Weight (kDa)

7.0

Isoelectric Point (pI)

40.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 677
AccBSI CCGCTC 1 cut(s) 292
AccII CGCG 1 cut(s) 230
AciI CCGC 3 cut(s) 228, 292, 837
AclWI GGATC 6 cut(s) 134, 139, 147, 542, 773, 786
AcoI YGGCCR 2 cut(s) 6, 511
AcsI RAATTY 3 cut(s) 553, 654, 767
AcuI CTGAAG 3 cut(s) 56, 254, 894
AfaI GTAC 3 cut(s) 302, 320, 366
AfiI CCNNNNNNNGG 1 cut(s) 709
AflIII ACRYGT 1 cut(s) 849
AgsI TTSAA 3 cut(s) 89, 197, 824
AhlI ACTAGT 1 cut(s) 986
AjiI CACGTC 1 cut(s) 190
AluBI AGCT 6 cut(s) 40, 316, 575, 692, 809, 827
AluI AGCT 6 cut(s) 40, 316, 575, 692, 809, 827
Alw21I GWGCWC 3 cut(s) 165, 258, 418
Alw26I GTCTC 4 cut(s) 337, 590, 977, 998
Alw44I GTGCAC 2 cut(s) 161, 254
AlwI GGATC 6 cut(s) 134, 139, 147, 542, 773, 786
Ama87I CYCGRG 2 cut(s) 182, 783
AoxI GGCC 2 cut(s) 6, 511
ApaLI GTGCAC 2 cut(s) 161, 254
ApeKI GCWGC 2 cut(s) 386, 716
ApoI RAATTY 3 cut(s) 553, 654, 767
ArsI GACNNNNNNTTYG 2 cut(s) 959, 991
Asp700I GAANNNNTTC 2 cut(s) 876, 919
AspA2I CCTAGG 1 cut(s) 115
AspLEI GCGC 4 cut(s) 232, 489, 678, 894
AsuC2I CCSGG 2 cut(s) 784, 785
AsuHPI GGTGA 1 cut(s) 601
AvaI CYCGRG 2 cut(s) 182, 783
AvrII CCTAGG 1 cut(s) 115
BaeGI GKGCMC 2 cut(s) 165, 258
BalI TGGCCA 2 cut(s) 8, 513
BamHI GGATCC 2 cut(s) 139, 778
BbsI GAAGAC 1 cut(s) 999
Bbv12I GWGCWC 3 cut(s) 165, 258, 418
BbvI GCAGC 2 cut(s) 398, 703
BccI CCATC 5 cut(s) 522, 538, 580, 659, 893
BciVI GTATCC 2 cut(s) 692, 896
BcnI CCSGG 2 cut(s) 784, 785
BcoDI GTCTC 4 cut(s) 337, 590, 977, 998
BcuI ACTAGT 1 cut(s) 986
BfaI CTAG 3 cut(s) 116, 600, 987
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 2 cut(s) 490, 895
BfuI GTATCC 2 cut(s) 692, 896
BglII AGATCT 1 cut(s) 49
BisI GCNGC 3 cut(s) 387, 717, 837
BlnI CCTAGG 1 cut(s) 115
BlsI GCNGC 3 cut(s) 388, 718, 838
Bme1390I CCNGG 2 cut(s) 784, 785
BmeT110I CYCGRG 2 cut(s) 182, 783
BmgBI CACGTC 1 cut(s) 190
BmiI GGNNCC 2 cut(s) 141, 780
BmrFI CCNGG 2 cut(s) 784, 785
BmsI GCATC 5 cut(s) 129, 548, 663, 703, 853
BpiI GAAGAC 1 cut(s) 999
BpmI CTGGAG 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 38, 519
BpuMI CCSGG 2 cut(s) 784, 785
Bsa29I ATCGAT 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 998
BsaJI CCNNGG 8 cut(s) 115, 183, 284, 774, 782, 783, 784, 997
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse3DI GCAATG 1 cut(s) 839
BseCI ATCGAT 1 cut(s) 249
BseDI CCNNGG 8 cut(s) 115, 183, 284, 774, 782, 783, 784, 997
BseGI GGATG 4 cut(s) 150, 367, 466, 718
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 2 cut(s) 65, 633
BseRI GAGGAG 1 cut(s) 974
BseSI GKGCMC 2 cut(s) 165, 258
BseXI GCAGC 2 cut(s) 398, 703
Bsh1236I CGCG 1 cut(s) 230
BshFI GGCC 2 cut(s) 8, 513
BshVI ATCGAT 1 cut(s) 249
BsiHKAI GWGCWC 3 cut(s) 165, 258, 418
BsiHKCI CYCGRG 2 cut(s) 182, 783
BsiSI CCGG 1 cut(s) 784
BslFI GGGAC 1 cut(s) 953
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 4 cut(s) 337, 590, 977, 998
BsmFI GGGAC 1 cut(s) 953
BsnI GGCC 2 cut(s) 8, 513
Bso31I GGTCTC 1 cut(s) 998
BsoBI CYCGRG 2 cut(s) 182, 783
Bsp1286I GDGCHC 3 cut(s) 165, 258, 418
Bsp1407I TGTACA 1 cut(s) 364
Bsp143I GATC 6 cut(s) 49, 131, 139, 246, 547, 778
BspACI CCGC 3 cut(s) 228, 292, 837
BspANI GGCC 2 cut(s) 8, 513
BspCNI CTCAG 2 cut(s) 66, 634
BspDI ATCGAT 1 cut(s) 249
BspFNI CGCG 1 cut(s) 230
BspLI GGNNCC 2 cut(s) 141, 780
BspPI GGATC 6 cut(s) 134, 139, 147, 542, 773, 786
BspTNI GGTCTC 1 cut(s) 998
BsrBI CCGCTC 1 cut(s) 292
BsrDI GCAATG 1 cut(s) 839
BsrGI TGTACA 1 cut(s) 364
BssECI CCNNGG 8 cut(s) 115, 183, 284, 774, 782, 783, 784, 997
BssMI GATC 6 cut(s) 49, 131, 139, 246, 547, 778
BssT1I CCWWGG 4 cut(s) 115, 284, 774, 997
Bst4CI ACNGT 3 cut(s) 128, 340, 402
BstAUI TGTACA 1 cut(s) 364
BstC8I GCNNGC 3 cut(s) 70, 258, 418
BstDEI CTNAG 3 cut(s) 60, 74, 642
BstF5I GGATG 4 cut(s) 150, 367, 466, 718
BstFNI CGCG 1 cut(s) 230
BstH2I RGCGCY 2 cut(s) 490, 895
BstHHI GCGC 4 cut(s) 232, 489, 678, 894
BstKTI GATC 6 cut(s) 52, 134, 142, 249, 550, 781
BstMAI GTCTC 4 cut(s) 337, 590, 977, 998
BstMBI GATC 6 cut(s) 49, 131, 139, 246, 547, 778
BstMWI GCNNNNNNNGC 1 cut(s) 833
BstNSI RCATGY 1 cut(s) 853
BstSCI CCNGG 2 cut(s) 782, 783
BstSFI CTRYAG 1 cut(s) 398
BstSLI GKGCMC 2 cut(s) 165, 258
BstUI CGCG 1 cut(s) 230
BstV1I GCAGC 2 cut(s) 398, 703
BstV2I GAAGAC 1 cut(s) 999
BstX2I RGATCY 4 cut(s) 49, 139, 547, 778
BstYI RGATCY 4 cut(s) 49, 139, 547, 778
Bsu15I ATCGAT 1 cut(s) 249
BsuI GTATCC 2 cut(s) 692, 896
BsuRI GGCC 2 cut(s) 8, 513
BsuTUI ATCGAT 1 cut(s) 249
BtrI CACGTC 1 cut(s) 190
BtsCI GGATG 4 cut(s) 150, 367, 466, 718
BtsI GCAGTG 1 cut(s) 209
BtsIMutI CAGTG 4 cut(s) 133, 209, 336, 514
Cac8I GCNNGC 3 cut(s) 70, 258, 418
CfoI GCGC 4 cut(s) 232, 489, 678, 894
Cfr9I CCCGGG 1 cut(s) 783
ClaI ATCGAT 1 cut(s) 249
Csp6I GTAC 3 cut(s) 301, 319, 365
CviAII CATG 3 cut(s) 269, 421, 850
CviQI GTAC 3 cut(s) 301, 319, 365
DdeI CTNAG 3 cut(s) 60, 74, 642
DpnI GATC 6 cut(s) 51, 133, 141, 248, 549, 780
DpnII GATC 6 cut(s) 49, 131, 139, 246, 547, 778
DraI TTTAAA 1 cut(s) 792
EaeI YGGCCR 2 cut(s) 6, 511
Eco130I CCWWGG 4 cut(s) 115, 284, 774, 997
Eco31I GGTCTC 1 cut(s) 998
Eco57I CTGAAG 3 cut(s) 56, 254, 894
Eco88I CYCGRG 2 cut(s) 182, 783
EcoT14I CCWWGG 4 cut(s) 115, 284, 774, 997
ErhI CCWWGG 4 cut(s) 115, 284, 774, 997
FaeI CATG 3 cut(s) 272, 424, 853
FalI AAGNNNNNCTT 6 cut(s) 305, 337, 476, 508, 816, 848
FaqI GGGAC 1 cut(s) 953
FatI CATG 3 cut(s) 268, 420, 849
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 3 cut(s) 387, 717, 837
FokI GGATG 4 cut(s) 137, 354, 453, 725
Fsp4HI GCNGC 3 cut(s) 387, 717, 837
FspAI RTGCGCAY 1 cut(s) 677
FspBI CTAG 3 cut(s) 116, 600, 987
FspI TGCGCA 1 cut(s) 677
GlaI GCGC 4 cut(s) 231, 488, 677, 893
GluI GCNGC 3 cut(s) 387, 717, 837
GsuI CTGGAG 1 cut(s) 714
HaeII RGCGCY 2 cut(s) 490, 895
HaeIII GGCC 2 cut(s) 8, 513
HapII CCGG 1 cut(s) 784
HhaI GCGC 4 cut(s) 232, 489, 678, 894
Hin1II CATG 3 cut(s) 272, 424, 853
Hin6I GCGC 4 cut(s) 230, 487, 676, 892
HinP1I GCGC 4 cut(s) 230, 487, 676, 892
HincII GTYRAC 1 cut(s) 45
HindII GTYRAC 1 cut(s) 45
HindIII AAGCTT 1 cut(s) 573
HinfI GANTC 3 cut(s) 280, 330, 915
HpaII CCGG 1 cut(s) 784
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 5 cut(s) 45, 163, 256, 365, 610
Hpy188I TCNGA 1 cut(s) 867
Hpy188III TCNNGA 5 cut(s) 154, 350, 440, 630, 912
Hpy8I GTNNAC 5 cut(s) 45, 163, 256, 365, 610
HpyAV CCTTC 3 cut(s) 58, 233, 586
HpyCH4III ACNGT 3 cut(s) 128, 340, 402
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 6 cut(s) 163, 256, 298, 730, 741, 844
HpyF10VI GCNNNNNNNGC 1 cut(s) 833
HpyF3I CTNAG 3 cut(s) 60, 74, 642
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 3 cut(s) 272, 424, 853
HspAI GCGC 4 cut(s) 230, 487, 676, 892
Kzo9I GATC 6 cut(s) 49, 131, 139, 246, 547, 778
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 398, 703
LweI GCATC 5 cut(s) 129, 548, 663, 703, 853
MaeI CTAG 3 cut(s) 116, 600, 987
MaeII ACGT 1 cut(s) 189
MalI GATC 6 cut(s) 51, 133, 141, 248, 549, 780
MbiI CCGCTC 1 cut(s) 292
MboI GATC 6 cut(s) 49, 131, 139, 246, 547, 778
MboII GAAGA 5 cut(s) 41, 247, 404, 775, 1004
MflI RGATCY 4 cut(s) 49, 139, 547, 778
MhlI GDGCHC 3 cut(s) 165, 258, 418
MlsI TGGCCA 2 cut(s) 8, 513
MluCI AATT 4 cut(s) 553, 654, 767, 861
MluNI TGGCCA 2 cut(s) 8, 513
MlyI GAGTC 2 cut(s) 289, 324
MmeI TCCRAC 2 cut(s) 117, 135
MnlI CCTC 8 cut(s) 35, 178, 197, 417, 689, 718, 952, 955
Mox20I TGGCCA 2 cut(s) 8, 513
MroXI GAANNNNTTC 2 cut(s) 876, 919
MscI TGGCCA 2 cut(s) 8, 513
MseI TTAA 6 cut(s) 312, 525, 557, 615, 791, 927
MslI CAYNNNNRTG 1 cut(s) 338
Msp20I TGGCCA 2 cut(s) 8, 513
MspA1I CMGCKG 1 cut(s) 692
MspI CCGG 1 cut(s) 784
MspR9I CCNGG 2 cut(s) 784, 785
MvnI CGCG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 833
NciI CCSGG 2 cut(s) 784, 785
NdeII GATC 6 cut(s) 49, 131, 139, 246, 547, 778
NlaIII CATG 3 cut(s) 272, 424, 853
NlaIV GGNNCC 2 cut(s) 141, 780
NsbI TGCGCA 1 cut(s) 677
NspI RCATGY 1 cut(s) 853
PciI ACATGT 1 cut(s) 849
PdmI GAANNNNTTC 2 cut(s) 876, 919
PfeI GAWTC 1 cut(s) 915
PkrI GCNGC 3 cut(s) 388, 718, 838
PleI GAGTC 2 cut(s) 288, 324
PpsI GAGTC 2 cut(s) 288, 324
PscI ACATGT 1 cut(s) 849
PspN4I GGNNCC 2 cut(s) 141, 780
PsuI RGATCY 4 cut(s) 49, 139, 547, 778
PvuII CAGCTG 1 cut(s) 692
RsaI GTAC 3 cut(s) 302, 320, 366
RsaNI GTAC 3 cut(s) 301, 319, 365
RseI CAYNNNNRTG 1 cut(s) 338
SaqAI TTAA 6 cut(s) 312, 525, 557, 615, 791, 927
SatI GCNGC 3 cut(s) 387, 717, 837
Sau3AI GATC 6 cut(s) 49, 131, 139, 246, 547, 778
SchI GAGTC 2 cut(s) 289, 324
ScrFI CCNGG 2 cut(s) 784, 785
SduI GDGCHC 3 cut(s) 165, 258, 418
SfaNI GCATC 5 cut(s) 129, 548, 663, 703, 853
SfcI CTRYAG 1 cut(s) 398
SmaI CCCGGG 1 cut(s) 785
SmiMI CAYNNNNRTG 1 cut(s) 338
SmlI CTYRAG 2 cut(s) 53, 534
SmoI CTYRAG 2 cut(s) 53, 534
SpeI ACTAGT 1 cut(s) 986
Sse9I AATT 4 cut(s) 553, 654, 767, 861
SsiI CCGC 3 cut(s) 228, 292, 837
SspMI CTAG 3 cut(s) 116, 600, 987
StyD4I CCNGG 2 cut(s) 782, 783
StyI CCWWGG 4 cut(s) 115, 284, 774, 997
TaaI ACNGT 3 cut(s) 128, 340, 402
TaiI ACGT 1 cut(s) 192
TaqI TCGA 4 cut(s) 27, 123, 249, 880
TasI AATT 4 cut(s) 553, 654, 767, 861
TatI WGTACW 2 cut(s) 318, 364
TauI GCSGC 1 cut(s) 839
TfiI GAWTC 1 cut(s) 915
Tru1I TTAA 6 cut(s) 312, 525, 557, 615, 791, 927
Tru9I TTAA 6 cut(s) 312, 525, 557, 615, 791, 927
TscAI CASTG 4 cut(s) 133, 216, 343, 514
TseI GCWGC 2 cut(s) 386, 716
TspDTI ATGAA 5 cut(s) 285, 368, 575, 638, 764
TspMI CCCGGG 1 cut(s) 783
TspRI CASTG 4 cut(s) 133, 216, 343, 514
VneI GTGCAC 2 cut(s) 161, 254
XapI RAATTY 3 cut(s) 553, 654, 767
XceI RCATGY 1 cut(s) 853
XmaI CCCGGG 1 cut(s) 783
XmaJI CCTAGG 1 cut(s) 115
XmnI GAANNNNTTC 2 cut(s) 876, 919
XspI CTAG 3 cut(s) 116, 600, 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.