Rorug02G0615600

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001068
Physical Location & Seq
Forward (+)
73312161 .. 73312703
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0615600.1

Sequence Viewer

Length: 543 bp
ATGGCGTGGTGTAGGCGGCACTGCAAAACAATGTTGGAAGGTTTTGTAACCAGAAAAGCAGCAGTGGCGGCGGCTACGTTAACGTTAGCAAGCAACTGGAAGAATGAGACGAAGAAAATTAGCATGTTTTCAGAATTCATAAGAAGAAATTCTTCTACTTTAGCAACACTTAAGGCAGAGGAGAAAAAGAAGAAAGGAATCATGGAAGAAGAAAGCTTTAAGTATAAGTCACTCTACTTATGTTTCGAGGAGTACACTAACGACAATGCTCATCATGTTATTCAATCTATCAGATTAAGCCATCTGTTAGCACAACCAGTACATGACAGCGATGATCTGAAATTACAGAGAGTTGCTTATAGATGTGGACCGGATACTGTTGTTCCCATACATATGAGTACTGGCGTCGTCGGCTCCAAAATTATTCTCTCTGGTGGTAAGGTTTTTCCTCCGGTACGACATCATCATATTTTTGAATATTCACTGAGCGACAGATCCAAGCATAGATCCAAACCCGAAATTGCACCATTCCCAAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.55

Weight (kDa)

9.56

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 16, 68, 71
AclI AACGTT 1 cut(s) 83
AclWI GGATC 2 cut(s) 489, 501
AcsI RAATTY 2 cut(s) 134, 148
AcyI GRCGYC 1 cut(s) 405
AfaI GTAC 4 cut(s) 254, 321, 400, 456
AflII CTTAAG 1 cut(s) 170
AgsI TTSAA 2 cut(s) 284, 476
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 101
AlwI GGATC 2 cut(s) 489, 501
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 134, 148
Asp700I GAANNNNTTC 2 cut(s) 148, 151
AspS9I GGNCC 1 cut(s) 368
AvaII GGWCC 1 cut(s) 368
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BbvI GCAGC 1 cut(s) 71
BccI CCATC 1 cut(s) 309
BciVI GTATCC 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 101
BfrI CTTAAG 1 cut(s) 170
BfuI GTATCC 1 cut(s) 367
BisI GCNGC 4 cut(s) 17, 60, 69, 72
BlsI GCNGC 4 cut(s) 18, 61, 70, 73
BmcAI AGTACT 1 cut(s) 400
Bme18I GGWCC 1 cut(s) 368
BmgT120I GGNCC 1 cut(s) 368
BmiI GGNNCC 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 405
BsaWI WCCGGW 2 cut(s) 370, 451
Bse1I ACTGG 3 cut(s) 101, 317, 406
BseMII CTCAG 1 cut(s) 476
BseNI ACTGG 3 cut(s) 101, 317, 406
BseRI GAGGAG 2 cut(s) 194, 263
BseXI GCAGC 1 cut(s) 71
BsiSI CCGG 2 cut(s) 371, 452
BsmAI GTCTC 1 cut(s) 101
BsmBI CGTCTC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 334, 494, 506
BspACI CCGC 3 cut(s) 16, 68, 71
BspCNI CTCAG 1 cut(s) 477
BspLI GGNNCC 1 cut(s) 415
BspPI GGATC 2 cut(s) 489, 501
BspTI CTTAAG 1 cut(s) 170
BsrI ACTGG 3 cut(s) 101, 317, 406
BssMI GATC 3 cut(s) 334, 494, 506
BssNI GRCGYC 1 cut(s) 405
Bst4CI ACNGT 1 cut(s) 379
BstACI GRCGYC 1 cut(s) 405
BstAFI CTTAAG 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 485
BstKTI GATC 3 cut(s) 337, 497, 509
BstMAI GTCTC 1 cut(s) 101
BstMBI GATC 3 cut(s) 334, 494, 506
BstMWI GCNNNNNNNGC 3 cut(s) 65, 68, 411
BstNSI RCATGY 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 2 cut(s) 494, 506
BstYI RGATCY 2 cut(s) 494, 506
BsuI GTATCC 1 cut(s) 367
BtgZI GCGATG 1 cut(s) 345
BtsI GCAGTG 2 cut(s) 19, 69
BtsIMutI CAGTG 3 cut(s) 19, 69, 482
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 368
CseI GACGC 1 cut(s) 394
Csp6I GTAC 4 cut(s) 253, 320, 399, 455
CviAII CATG 4 cut(s) 124, 202, 275, 323
CviJI RGCY 4 cut(s) 74, 216, 300, 414
CviKI_1 RGCY 4 cut(s) 74, 216, 300, 414
CviQI GTAC 4 cut(s) 253, 320, 399, 455
DdeI CTNAG 1 cut(s) 485
DpnI GATC 3 cut(s) 336, 496, 508
DpnII GATC 3 cut(s) 334, 494, 506
Eco47I GGWCC 1 cut(s) 368
EcoRI GAATTC 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 101
FaeI CATG 4 cut(s) 127, 205, 278, 326
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FatI CATG 4 cut(s) 123, 201, 274, 322
FauNDI CATATG 1 cut(s) 393
Fnu4HI GCNGC 4 cut(s) 17, 60, 69, 72
Fsp4HI GCNGC 4 cut(s) 17, 60, 69, 72
GluI GCNGC 4 cut(s) 17, 60, 69, 72
HapII CCGG 2 cut(s) 371, 452
HgaI GACGC 1 cut(s) 394
Hin1I GRCGYC 1 cut(s) 405
Hin1II CATG 4 cut(s) 127, 205, 278, 326
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HindIII AAGCTT 1 cut(s) 214
HinfI GANTC 1 cut(s) 198
HpaI GTTAAC 1 cut(s) 81
HpaII CCGG 2 cut(s) 371, 452
Hpy166II GTNNAC 3 cut(s) 81, 255, 368
Hpy188I TCNGA 3 cut(s) 133, 293, 339
Hpy8I GTNNAC 3 cut(s) 81, 255, 368
Hpy99I CGWCG 2 cut(s) 410, 413
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 379
HpyCH4IV ACGT 2 cut(s) 77, 83
HpyCH4V TGCA 2 cut(s) 24, 524
HpyF10VI GCNNNNNNNGC 3 cut(s) 65, 68, 411
HpyF3I CTNAG 1 cut(s) 485
HpySE526I ACGT 2 cut(s) 77, 83
Hsp92I GRCGYC 1 cut(s) 405
Hsp92II CATG 4 cut(s) 127, 205, 278, 326
KspAI GTTAAC 1 cut(s) 81
Kzo9I GATC 3 cut(s) 334, 494, 506
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 7 cut(s) 64, 82, 330, 384, 387, 417, 465
Lsp1109I GCAGC 1 cut(s) 71
MaeII ACGT 2 cut(s) 77, 83
MaeIII GTNAC 2 cut(s) 46, 228
MalI GATC 3 cut(s) 336, 496, 508
MboI GATC 3 cut(s) 334, 494, 506
MboII GAAGA 7 cut(s) 112, 124, 144, 156, 202, 218, 221
MflI RGATCY 2 cut(s) 494, 506
MluCI AATT 6 cut(s) 117, 134, 148, 341, 420, 519
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 3 cut(s) 172, 241, 459
MroXI GAANNNNTTC 2 cut(s) 148, 151
MseI TTAA 5 cut(s) 80, 171, 219, 296, 541
MslI CAYNNNNRTG 1 cut(s) 392
MspCI CTTAAG 1 cut(s) 170
MspI CCGG 2 cut(s) 371, 452
MwoI GCNNNNNNNGC 3 cut(s) 65, 68, 411
NdeI CATATG 1 cut(s) 393
NdeII GATC 3 cut(s) 334, 494, 506
NlaIII CATG 4 cut(s) 127, 205, 278, 326
NlaIV GGNNCC 1 cut(s) 415
NmuCI GTSAC 1 cut(s) 228
NspI RCATGY 1 cut(s) 127
PdmI GAANNNNTTC 2 cut(s) 148, 151
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 4 cut(s) 18, 61, 70, 73
Psp1406I AACGTT 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 415
PspPI GGNCC 1 cut(s) 368
PsuI RGATCY 2 cut(s) 494, 506
RsaI GTAC 4 cut(s) 254, 321, 400, 456
RsaNI GTAC 4 cut(s) 253, 320, 399, 455
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 5 cut(s) 80, 171, 219, 296, 541
SatI GCNGC 4 cut(s) 17, 60, 69, 72
Sau3AI GATC 3 cut(s) 334, 494, 506
Sau96I GGNCC 1 cut(s) 368
ScaI AGTACT 1 cut(s) 400
SetI ASST 5 cut(s) 43, 80, 86, 218, 444
SinI GGWCC 1 cut(s) 368
SmiMI CAYNNNNRTG 1 cut(s) 392
SmlI CTYRAG 1 cut(s) 170
SmoI CTYRAG 1 cut(s) 170
Sse9I AATT 6 cut(s) 117, 134, 148, 341, 420, 519
SsiI CCGC 3 cut(s) 16, 68, 71
SspI AATATT 1 cut(s) 479
TaaI ACNGT 1 cut(s) 379
TaiI ACGT 2 cut(s) 80, 86
TaqI TCGA 1 cut(s) 246
TasI AATT 6 cut(s) 117, 134, 148, 341, 420, 519
TatI WGTACW 3 cut(s) 252, 319, 398
TauI GCSGC 3 cut(s) 19, 71, 74
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 5 cut(s) 80, 171, 219, 296, 541
Tru9I TTAA 5 cut(s) 80, 171, 219, 296, 541
TscAI CASTG 3 cut(s) 26, 69, 489
TseFI GTSAC 1 cut(s) 228
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 228
TspDTI ATGAA 1 cut(s) 127
TspRI CASTG 3 cut(s) 26, 69, 489
Vha464I CTTAAG 1 cut(s) 170
VpaK11BI GGWCC 1 cut(s) 368
XapI RAATTY 2 cut(s) 134, 148
XceI RCATGY 1 cut(s) 127
XmnI GAANNNNTTC 2 cut(s) 148, 151
ZrmI AGTACT 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.