Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

19529743 .. 19531677

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G47610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCCCGAAGAAAGGAGTGAAGGTAGCTGCTAAGAAGAAGACCGCGGAGAAAGTTTCAAACCCTCTATTCGAGAGGAGGCCTAAGCAATTCGGTATTGGTGGAGCTTTACCTCCTAAGAAGGATCTCTCTCGCTACATCAAATGGCCCAAATCCATCCGTCTTCAAAGGCAAAAGAGGATCCTGAAGCAGAGGTTGAAGGTCCCTCCAGCTCTTAACCAATTCACCAAGACTCTTGACAAGAATCTTGCTACCAGCCTCTTCAAGGTCCTTCTGAAGTACAGGCCAGAAGACAAAGCTGCCAAGAAGGAGCGTCTTGTAAAGAAGGCCCAAGCTGAAGCTGAGGGAAAGCCTTCTGAGTCTAAGAAGCCCATTGTAGTCAAATACGGCCTCAACCATGTGACCTACCTCATTGAGCAGAACAAGGCCCAACTTGTTGTTATTGCTCATGATGTCGACCCAATTGAGTTGGTTGTCTGGTTGCCTGCTCTGTGCAGGAAGATGGAAGTCCCGTACTGCATTGTCAAGGGCAAATCTCGTCTTGGAGCGGTTGTTCACCAGAAGACTGCTTCTTGCTTGTGTTTGACCACTGTCAAGAACGAGGACAAGCTAGAGTTCAGCAAAATCCTGGAAGCTATCAAGGCCAACTTCAATGACAAGTACGAGGAGTACAGGAAGAAATGGGGAGGAGGCATAATGGGATCTAAGTCTCAGGCAAAGACCAAGGCAAAGGAAAGAGTTATTGCAAAGGAGGCTGCCCAAAGGATGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

257

Amino Acids

29.13

Weight (kDa)

10.14

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	114 - 203	6e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	456
AccII	CGCG	1 cut(s)	47
AciI	CCGC	3 cut(s)	45, 47, 548
AclWI	GGATC	4 cut(s)	132, 175, 188, 709
AcuI	CTGAAG	3 cut(s)	206, 296, 357
AfaI	GTAC	4 cut(s)	281, 515, 662, 671
AfiI	CCNNNNNNNGG	2 cut(s)	14, 265
AgsI	TTSAA	5 cut(s)	60, 167, 199, 265, 652
AjnI	CCWGG	1 cut(s)	627
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	8 cut(s)	29, 107, 212, 299, 335, 341, 610, 635
AluI	AGCT	8 cut(s)	29, 107, 212, 299, 335, 341, 610, 635
Alw26I	GTCTC	1 cut(s)	714
AlwI	GGATC	4 cut(s)	132, 175, 188, 709
AoxI	GGCC	8 cut(s)	3, 80, 146, 284, 327, 388, 426, 642
ApeKI	GCWGC	3 cut(s)	29, 299, 755
Asp700I	GAANNNNTTC	1 cut(s)	352
AspS9I	GGNCC	6 cut(s)	4, 147, 202, 268, 328, 427
AsuHPI	GGTGA	2 cut(s)	217, 548
AvaII	GGWCC	2 cut(s)	202, 268
BamHI	GGATCC	1 cut(s)	180
BbsI	GAAGAC	4 cut(s)	47, 155, 297, 569
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	3 cut(s)	16, 286, 742
BccI	CCATC	2 cut(s)	164, 496
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	629
BcoDI	GTCTC	1 cut(s)	714
BfaI	CTAG	1 cut(s)	611
BisI	GCNGC	3 cut(s)	30, 300, 756
BlsI	GCNGC	3 cut(s)	31, 301, 757
Bme1390I	CCNGG	1 cut(s)	629
Bme18I	GGWCC	2 cut(s)	202, 268
BmgT120I	GGNCC	6 cut(s)	4, 147, 202, 268, 328, 427
BmiI	GGNNCC	3 cut(s)	6, 182, 204
BmrFI	CCNGG	1 cut(s)	629
BoxI	GACNNNNGTC	1 cut(s)	590
BpiI	GAAGAC	4 cut(s)	47, 155, 297, 569
BpmI	CTGGAG	1 cut(s)	192
Bpu10I	CCTNAGC	2 cut(s)	84, 342
BsaJI	CCNNGG	2 cut(s)	45, 723
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 537, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 265
BseBI	CCWGG	1 cut(s)	629
BseDI	CCNNGG	2 cut(s)	45, 723
BseGI	GGATG	2 cut(s)	156, 771
BseLI	CCNNNNNNNGG	2 cut(s)	14, 265
BseMII	CTCAG	3 cut(s)	333, 348, 725
BseRI	GAGGAG	3 cut(s)	91, 680, 702
BseXI	GCAGC	3 cut(s)	16, 286, 742
BsgI	GTGCAG	1 cut(s)	514
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	8 cut(s)	5, 82, 148, 286, 329, 390, 428, 644
BslFI	GGGAC	2 cut(s)	188, 494
BslI	CCNNNNNNNGG	2 cut(s)	14, 265
BsmAI	GTCTC	1 cut(s)	714
BsmFI	GGGAC	2 cut(s)	188, 494
BsnI	GGCC	8 cut(s)	5, 82, 148, 286, 329, 390, 428, 644
Bsp143I	GATC	3 cut(s)	124, 180, 701
BspACI	CCGC	3 cut(s)	45, 47, 548
BspANI	GGCC	8 cut(s)	5, 82, 148, 286, 329, 390, 428, 644
BspCNI	CTCAG	3 cut(s)	334, 349, 724
BspFNI	CGCG	1 cut(s)	47
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	3 cut(s)	6, 182, 204
BspPI	GGATC	4 cut(s)	132, 175, 188, 709
BsrBI	CCGCTC	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	45, 723
BssMI	GATC	3 cut(s)	124, 180, 701
BssT1I	CCWWGG	1 cut(s)	723
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	8 cut(s)	33, 84, 117, 342, 357, 363, 705, 711
BstDSI	CCRYGG	1 cut(s)	45
BstENI	CCTNNNNNAGG	1 cut(s)	263
BstF5I	GGATG	2 cut(s)	156, 771
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	3 cut(s)	127, 183, 704
BstMAI	GTCTC	1 cut(s)	714
BstMBI	GATC	3 cut(s)	124, 180, 701
BstMWI	GCNNNNNNNGC	2 cut(s)	641, 752
BstNI	CCWGG	1 cut(s)	629
BstPAI	GACNNNNGTC	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	627
BstUI	CGCG	1 cut(s)	47
BstV1I	GCAGC	3 cut(s)	16, 286, 742
BstV2I	GAAGAC	4 cut(s)	47, 155, 297, 569
BstX2I	RGATCY	3 cut(s)	124, 180, 701
BstYI	RGATCY	3 cut(s)	124, 180, 701
BsuRI	GGCC	8 cut(s)	5, 82, 148, 286, 329, 390, 428, 644
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	2 cut(s)	156, 771
BtsIMutI	CAGTG	1 cut(s)	588
Cac8I	GCNNGC	1 cut(s)	486
CciI	TCATGA	1 cut(s)	448
Cfr13I	GGNCC	6 cut(s)	4, 147, 202, 268, 328, 427
Cfr42I	CCGCGG	1 cut(s)	48
CseI	GACGC	1 cut(s)	302
Csp6I	GTAC	4 cut(s)	280, 514, 661, 670
CviAII	CATG	2 cut(s)	398, 449
CviQI	GTAC	4 cut(s)	280, 514, 661, 670
DdeI	CTNAG	8 cut(s)	33, 84, 117, 342, 357, 363, 705, 711
DpnI	GATC	3 cut(s)	126, 182, 703
DpnII	GATC	3 cut(s)	124, 180, 701
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	723
Eco147I	AGGCCT	1 cut(s)	82
Eco47I	GGWCC	2 cut(s)	202, 268
Eco57I	CTGAAG	3 cut(s)	206, 296, 357
EcoNI	CCTNNNNNAGG	1 cut(s)	263
EcoO109I	RGGNCCY	2 cut(s)	202, 268
EcoRII	CCWGG	1 cut(s)	627
EcoT14I	CCWWGG	1 cut(s)	723
ErhI	CCWWGG	1 cut(s)	723
FaeI	CATG	2 cut(s)	401, 452
FaiI	YATR	3 cut(s)	399, 450, 695
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	2 cut(s)	188, 494
FatI	CATG	2 cut(s)	397, 448
FblI	GTMKAC	1 cut(s)	456
Fnu4HI	GCNGC	3 cut(s)	30, 300, 756
FokI	GGATG	1 cut(s)	143
Fsp4HI	GCNGC	3 cut(s)	30, 300, 756
FspBI	CTAG	1 cut(s)	611
GluI	GCNGC	3 cut(s)	30, 300, 756
GsuI	CTGGAG	1 cut(s)	192
HaeIII	GGCC	8 cut(s)	5, 82, 148, 286, 329, 390, 428, 644
HgaI	GACGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	401, 452
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HinfI	GANTC	3 cut(s)	232, 244, 359
HphI	GGTGA	2 cut(s)	217, 548
Hpy166II	GTNNAC	2 cut(s)	457, 556
Hpy188I	TCNGA	2 cut(s)	276, 358
Hpy188III	TCNNGA	5 cut(s)	73, 184, 236, 449, 595
Hpy8I	GTNNAC	2 cut(s)	457, 556
HpyAV	CCTTC	7 cut(s)	16, 115, 193, 281, 301, 319, 363
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4V	TGCA	3 cut(s)	495, 519, 746
HpyF10VI	GCNNNNNNNGC	2 cut(s)	641, 752
HpyF3I	CTNAG	8 cut(s)	33, 84, 117, 342, 357, 363, 705, 711
Hsp92II	CATG	2 cut(s)	401, 452
KspI	CCGCGG	1 cut(s)	48
Kzo9I	GATC	3 cut(s)	124, 180, 701
LmnI	GCTCC	3 cut(s)	104, 310, 545
Lsp1109I	GCAGC	3 cut(s)	16, 286, 742
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	3 cut(s)	126, 182, 703
MbiI	CCGCTC	1 cut(s)	548
MboI	GATC	3 cut(s)	124, 180, 701
MboII	GAAGA	9 cut(s)	22, 49, 52, 155, 253, 302, 511, 574, 688
MfeI	CAATTG	1 cut(s)	462
MflI	RGATCY	3 cut(s)	124, 180, 701
MluCI	AATT	4 cut(s)	89, 221, 462, 769
MlyI	GAGTC	2 cut(s)	226, 368
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	2 cut(s)	216, 772
MspA1I	CMGCKG	1 cut(s)	47
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	641, 752
NdeII	GATC	3 cut(s)	124, 180, 701
NlaIII	CATG	2 cut(s)	401, 452
NlaIV	GGNNCC	3 cut(s)	6, 182, 204
NmuCI	GTSAC	1 cut(s)	400
PagI	TCATGA	1 cut(s)	448
PceI	AGGCCT	1 cut(s)	82
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	244
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	3 cut(s)	31, 301, 757
PleI	GAGTC	2 cut(s)	226, 367
PpsI	GAGTC	2 cut(s)	226, 367
PpuMI	RGGWCCY	2 cut(s)	202, 268
PshAI	GACNNNNGTC	1 cut(s)	590
Psp5II	RGGWCCY	2 cut(s)	202, 268
Psp6I	CCWGG	1 cut(s)	627
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	3 cut(s)	6, 182, 204
PspPI	GGNCC	6 cut(s)	4, 147, 202, 268, 328, 427
PspPPI	RGGWCCY	2 cut(s)	202, 268
PsuI	RGATCY	3 cut(s)	124, 180, 701
RsaI	GTAC	4 cut(s)	281, 515, 662, 671
RsaNI	GTAC	4 cut(s)	280, 514, 661, 670
SacII	CCGCGG	1 cut(s)	48
SalI	GTCGAC	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	216, 772
SatI	GCNGC	3 cut(s)	30, 300, 756
Sau3AI	GATC	3 cut(s)	124, 180, 701
Sau96I	GGNCC	6 cut(s)	4, 147, 202, 268, 328, 427
SchI	GAGTC	2 cut(s)	226, 368
ScrFI	CCNGG	1 cut(s)	629
Sfr303I	CCGCGG	1 cut(s)	48
SgrBI	CCGCGG	1 cut(s)	48
SinI	GGWCC	2 cut(s)	202, 268
Sse9I	AATT	4 cut(s)	89, 221, 462, 769
SseBI	AGGCCT	1 cut(s)	82
SsiI	CCGC	3 cut(s)	45, 47, 548
SspMI	CTAG	1 cut(s)	611
StuI	AGGCCT	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	627
StyI	CCWWGG	1 cut(s)	723
TaaI	ACNGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	72, 456
TasI	AATT	4 cut(s)	89, 221, 462, 769
TatI	WGTACW	2 cut(s)	279, 669
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	2 cut(s)	216, 772
Tru9I	TTAA	2 cut(s)	216, 772
TscAI	CASTG	1 cut(s)	595
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	29, 299, 755
Tsp45I	GTSAC	1 cut(s)	400
TspGWI	ACGGA	1 cut(s)	149
TspRI	CASTG	1 cut(s)	595
VpaK11BI	GGWCC	2 cut(s)	202, 268
XagI	CCTNNNNNAGG	1 cut(s)	263
XmiI	GTMKAC	1 cut(s)	456
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.