Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

209918 .. 211684

Gene Structure 1767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1002900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTTTACGATGCCCACAGGGCATCCGCTTTAACTCAGCTGAAGGCCCAGCCCGTACAGTCACTGTTTGTTAATGCCCCCAAAAGAGGCGTAAAAGCTCCAGTTGCAGCTTCCAAGAAGAAGACGCGCCCGAAGCAGTTCGGTATCGGTGGGGCATTGCCACCGAAGAGGGATCTGACCCGGTTCGTGAAATGGCCCAAGGTGGTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCTCCAGCTTTGAACCAGTTCACCAAGACCCTCGATAAGAACCTCGCCACCAGCCTGTTCAAGATGCTTCTCAAGTACAGGCCAGAGGACAAAGCTGCAAAGAAGGAGCGCCTTTTGAAAAGGGCCCAGGCCGAGACCGAAGGGAAAACTGTTGAGGCCAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCACGTGACTTACCTGATTGAGCAGAACAAGGCCCAGCTTGTTGTTATTGCGCACGATGTTGACCCAATAGAGTTGGTTGTCTGGCTTCCTGCATTATGTAGGAAGATGGAAGTCCCATATTGCATTGTGAAGGGCAAAGCACGCTTGGGATCGATTGTCCACAAGAAAACTGCATCAGTTTTGTGCTTGACAACAGTCAAGAACGAGGATAAGTTGGAGTTCAGCAAGGTCTTGGAGGCAATCAAGGCCAACTTCAATGACAAGTACGAAGAGTACAGGAAAAAGTGGGGAGGGGGCATCATGGGTTCCAAATCCCAGGCAAAAACTAGGGCGAAGGAGAAGCTCCTTGCGAAGGAAGCTGCTCAAAGGCTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

274

Amino Acids

30.87

Weight (kDa)

10.26

Isoelectric Point (pI)

30.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	130 - 220	3.5e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	495
AccII	CGCG	1 cut(s)	127
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	4 cut(s)	180, 223, 236, 601
AcuI	CTGAAG	1 cut(s)	62
AcvI	CACGTG	1 cut(s)	448
AfaI	GTAC	4 cut(s)	57, 329, 710, 719
AfiI	CCNNNNNNNGG	2 cut(s)	86, 796
AgsI	TTSAA	5 cut(s)	247, 265, 313, 370, 700
AjnI	CCWGG	2 cut(s)	378, 759
AluBI	AGCT	8 cut(s)	40, 98, 110, 260, 347, 481, 787, 803
AluI	AGCT	8 cut(s)	40, 98, 110, 260, 347, 481, 787, 803
Alw26I	GTCTC	2 cut(s)	380, 443
AlwI	GGATC	4 cut(s)	180, 223, 236, 601
AlwNI	CAGNNNCTG	1 cut(s)	64
AoxI	GGCC	8 cut(s)	45, 194, 332, 375, 381, 408, 474, 690
ApaI	GGGCCC	1 cut(s)	379
ApeKI	GCWGC	3 cut(s)	107, 347, 803
Asp700I	GAANNNNTTC	2 cut(s)	137, 269
AspLEI	GCGC	3 cut(s)	129, 363, 496
AspS9I	GGNCC	5 cut(s)	46, 195, 375, 376, 475
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	265
BaeGI	GKGCMC	1 cut(s)	379
BamHI	GGATCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	379
BbrPI	CACGTG	1 cut(s)	448
BbsI	GAAGAC	1 cut(s)	128
BbvI	GCAGC	3 cut(s)	119, 334, 790
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	2 cut(s)	380, 761
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	2 cut(s)	380, 443
BfaI	CTAG	1 cut(s)	771
BfoI	RGCGCY	1 cut(s)	364
BglI	GCCNNNNNGGC	1 cut(s)	20
BisI	GCNGC	3 cut(s)	108, 348, 804
BlsI	GCNGC	3 cut(s)	109, 349, 805
Bme1390I	CCNGG	3 cut(s)	181, 380, 761
BmgT120I	GGNCC	5 cut(s)	46, 195, 375, 376, 475
BmiI	GGNNCC	4 cut(s)	230, 252, 377, 751
BmrFI	CCNGG	3 cut(s)	181, 380, 761
BmsI	GCATC	4 cut(s)	32, 306, 626, 750
BoxI	GACNNNNGTC	1 cut(s)	638
BpiI	GAAGAC	1 cut(s)	128
BpmI	CTGGAG	2 cut(s)	84, 240
BpuEI	CTTGAG	2 cut(s)	218, 308
BpuMI	CCSGG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	596
BsaAI	YACGTR	1 cut(s)	448
BsaI	GGTCTC	2 cut(s)	380, 443
BsaJI	CCNNGG	3 cut(s)	198, 378, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 796
Bse1I	ACTGG	2 cut(s)	101, 268
Bse3DI	GCAATG	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	380, 761
BseCI	ATCGAT	1 cut(s)	596
BseDI	CCNNGG	3 cut(s)	198, 378, 759
BseGI	GGATG	1 cut(s)	23
BseLI	CCNNNNNNNGG	2 cut(s)	86, 796
BseMI	GCAATG	1 cut(s)	155
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	101, 268
BseSI	GKGCMC	1 cut(s)	379
BseXI	GCAGC	3 cut(s)	119, 334, 790
BseYI	CCCAGC	2 cut(s)	48, 477
Bsh1236I	CGCG	1 cut(s)	127
BshFI	GGCC	8 cut(s)	47, 196, 334, 377, 383, 410, 476, 692
BshVI	ATCGAT	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	2 cut(s)	86, 796
BsmAI	GTCTC	2 cut(s)	380, 443
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	8 cut(s)	47, 196, 334, 377, 383, 410, 476, 692
Bso31I	GGTCTC	2 cut(s)	380, 443
Bsp120I	GGGCCC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp143I	GATC	3 cut(s)	172, 228, 593
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	8 cut(s)	47, 196, 334, 377, 383, 410, 476, 692
BspCNI	CTCAG	1 cut(s)	49
BspDI	ATCGAT	1 cut(s)	596
BspFNI	CGCG	1 cut(s)	127
BspLI	GGNNCC	4 cut(s)	230, 252, 377, 751
BspPI	GGATC	4 cut(s)	180, 223, 236, 601
BspTNI	GGTCTC	2 cut(s)	380, 443
BsrDI	GCAATG	1 cut(s)	155
BsrI	ACTGG	2 cut(s)	101, 268
BssECI	CCNNGG	3 cut(s)	198, 378, 759
BssMI	GATC	3 cut(s)	172, 228, 593
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	2 cut(s)	380, 761
Bst4CI	ACNGT	4 cut(s)	60, 66, 403, 640
Bst6I	CTCTTC	3 cut(s)	161, 218, 708
BstBAI	YACGTR	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	586
BstDEI	CTNAG	1 cut(s)	36
BstENI	CCTNNNNNAGG	1 cut(s)	794
BstF5I	GGATG	1 cut(s)	23
BstFNI	CGCG	1 cut(s)	127
BstH2I	RGCGCY	1 cut(s)	364
BstHHI	GCGC	3 cut(s)	129, 363, 496
BstKTI	GATC	3 cut(s)	175, 231, 596
BstMAI	GTCTC	2 cut(s)	380, 443
BstMBI	GATC	3 cut(s)	172, 228, 593
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 104, 133, 585, 689, 800
BstNI	CCWGG	2 cut(s)	380, 761
BstPAI	GACNNNNGTC	1 cut(s)	638
BstSCI	CCNGG	3 cut(s)	179, 378, 759
BstSLI	GKGCMC	1 cut(s)	379
BstUI	CGCG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	119, 334, 790
BstV2I	GAAGAC	1 cut(s)	128
BstX2I	RGATCY	2 cut(s)	172, 228
BstYI	RGATCY	2 cut(s)	172, 228
Bsu15I	ATCGAT	1 cut(s)	596
BsuRI	GGCC	8 cut(s)	47, 196, 334, 377, 383, 410, 476, 692
BsuTUI	ATCGAT	1 cut(s)	596
BtsCI	GGATG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	62
Cac8I	GCNNGC	1 cut(s)	586
CaiI	CAGNNNCTG	1 cut(s)	64
CfoI	GCGC	3 cut(s)	129, 363, 496
Cfr13I	GGNCC	5 cut(s)	46, 195, 375, 376, 475
ClaI	ATCGAT	1 cut(s)	596
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	4 cut(s)	56, 328, 709, 718
CviAII	CATG	1 cut(s)	745
CviQI	GTAC	4 cut(s)	56, 328, 709, 718
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	3 cut(s)	174, 230, 595
DpnII	GATC	3 cut(s)	172, 228, 593
Eam1104I	CTCTTC	3 cut(s)	161, 218, 708
EarI	CTCTTC	3 cut(s)	161, 218, 708
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	379
Eco31I	GGTCTC	2 cut(s)	380, 443
Eco57I	CTGAAG	1 cut(s)	62
Eco72I	CACGTG	1 cut(s)	448
EcoNI	CCTNNNNNAGG	1 cut(s)	794
EcoO109I	RGGNCCY	1 cut(s)	375
EcoRII	CCWGG	2 cut(s)	378, 759
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	379
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	748
FaiI	YATR	4 cut(s)	435, 541, 562, 746
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	1 cut(s)	744
Fnu4HI	GCNGC	3 cut(s)	108, 348, 804
FokI	GGATG	1 cut(s)	10
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	3 cut(s)	108, 348, 804
FspBI	CTAG	1 cut(s)	771
FspI	TGCGCA	1 cut(s)	495
GlaI	GCGC	3 cut(s)	128, 362, 495
GluI	GCNGC	3 cut(s)	108, 348, 804
GsaI	CCCAGC	2 cut(s)	52, 481
GsuI	CTGGAG	2 cut(s)	84, 240
HaeII	RGCGCY	1 cut(s)	364
HaeIII	GGCC	8 cut(s)	47, 196, 334, 377, 383, 410, 476, 692
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	3 cut(s)	129, 363, 496
Hin1II	CATG	1 cut(s)	748
Hin6I	GCGC	3 cut(s)	127, 361, 494
HinP1I	GCGC	3 cut(s)	127, 361, 494
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	1 cut(s)	211
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	3 cut(s)	273, 505, 604
Hpy188I	TCNGA	3 cut(s)	177, 210, 216
Hpy188III	TCNNGA	3 cut(s)	187, 313, 643
Hpy8I	GTNNAC	3 cut(s)	273, 505, 604
HpyAV	CCTTC	7 cut(s)	37, 241, 349, 386, 568, 772, 790
HpyCH4III	ACNGT	4 cut(s)	60, 66, 403, 640
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	5 cut(s)	107, 350, 536, 567, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 104, 133, 585, 689, 800
HpyF3I	CTNAG	1 cut(s)	36
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	748
HspAI	GCGC	3 cut(s)	127, 361, 494
Kzo9I	GATC	3 cut(s)	172, 228, 593
LmnI	GCTCC	3 cut(s)	103, 358, 792
Lsp1109I	GCAGC	3 cut(s)	119, 334, 790
LweI	GCATC	4 cut(s)	32, 306, 626, 750
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	60, 448
MalI	GATC	3 cut(s)	174, 230, 595
MboI	GATC	3 cut(s)	172, 228, 593
MboII	GAAGA	7 cut(s)	130, 133, 178, 232, 235, 559, 725
MflI	RGATCY	2 cut(s)	172, 228
MhlI	GDGCHC	1 cut(s)	379
MmeI	TCCRAC	1 cut(s)	639
MroXI	GAANNNNTTC	2 cut(s)	137, 269
MseI	TTAA	2 cut(s)	32, 72
MspA1I	CMGCKG	1 cut(s)	40
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	3 cut(s)	181, 380, 761
MvaI	CCWGG	2 cut(s)	380, 761
MvnI	CGCG	1 cut(s)	127
MwoI	GCNNNNNNNGC	6 cut(s)	20, 104, 133, 585, 689, 800
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	3 cut(s)	172, 228, 593
NlaIII	CATG	1 cut(s)	748
NlaIV	GGNNCC	4 cut(s)	230, 252, 377, 751
NmeAIII	GCCGAG	1 cut(s)	409
NmuCI	GTSAC	2 cut(s)	60, 448
NsbI	TGCGCA	1 cut(s)	495
PdmI	GAANNNNTTC	2 cut(s)	137, 269
PfeI	GAWTC	1 cut(s)	211
PkrI	GCNGC	3 cut(s)	109, 349, 805
PmaCI	CACGTG	1 cut(s)	448
PmlI	CACGTG	1 cut(s)	448
Ppu21I	YACGTR	1 cut(s)	448
PshAI	GACNNNNGTC	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	378, 759
PspCI	CACGTG	1 cut(s)	448
PspFI	CCCAGC	2 cut(s)	48, 477
PspGI	CCWGG	2 cut(s)	378, 759
PspN4I	GGNNCC	4 cut(s)	230, 252, 377, 751
PspOMI	GGGCCC	1 cut(s)	375
PspPI	GGNCC	5 cut(s)	46, 195, 375, 376, 475
PstNI	CAGNNNCTG	1 cut(s)	64
PsuI	RGATCY	2 cut(s)	172, 228
PvuII	CAGCTG	1 cut(s)	40
RsaI	GTAC	4 cut(s)	57, 329, 710, 719
RsaNI	GTAC	4 cut(s)	56, 328, 709, 718
SaqAI	TTAA	2 cut(s)	32, 72
SatI	GCNGC	3 cut(s)	108, 348, 804
Sau3AI	GATC	3 cut(s)	172, 228, 593
Sau96I	GGNCC	5 cut(s)	46, 195, 375, 376, 475
ScrFI	CCNGG	3 cut(s)	181, 380, 761
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	4 cut(s)	32, 306, 626, 750
SmlI	CTYRAG	2 cut(s)	233, 323
SmoI	CTYRAG	2 cut(s)	233, 323
SsiI	CCGC	1 cut(s)	27
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	179, 378, 759
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	4 cut(s)	60, 66, 403, 640
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	2 cut(s)	285, 596
TaqII	GACCGA	1 cut(s)	404
TatI	WGTACW	2 cut(s)	327, 717
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	2 cut(s)	32, 72
Tru9I	TTAA	2 cut(s)	32, 72
TscAI	CASTG	1 cut(s)	69
TseFI	GTSAC	2 cut(s)	60, 448
TseI	GCWGC	3 cut(s)	107, 347, 803
Tsp45I	GTSAC	2 cut(s)	60, 448
TspRI	CASTG	1 cut(s)	69
XagI	CCTNNNNNAGG	1 cut(s)	794
XmnI	GAANNNNTTC	2 cut(s)	137, 269
XspI	CTAG	1 cut(s)	771

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.