Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

35593739 .. 35597002

Gene Structure 3264 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00312550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCCATGAACCCTACAGACACCAAGGAGATTGGGAGTTCTATGAGAGAAGAAGATGATAGAGGAGGTCAAGAAGGCTTACAAGGAGGATTTGAAGCTTCATCTAAGAATGACAACCAGTCCCCCAAGGCCACAGGAATGGTATCAAGAAGCCCTAGAGGCATCGCCACACTTTCACCAAGGATAAGGGGTCTGGGGGACTTTATCCTCTGTCGGTATGGAAGTGAAGTTCAACGGAACAAGAGAACTAAATATGATACAGCAAACTATACGGATAACGATTGTGCTTCAAAAGGTGCCGTAGAAGTACCTTATTGGAATCAAGTCTTCGGGGACTGGGATGGGCACCGATGGTGGATATTGGAAGGGGGTTATGGTAAACATGTTCATGCCGAAGACAAAGCAGAGAAGAAGGAGTGTCTTTTGAAAAGGGCTCAGGCAGAGACCGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATCGCTCATGATGTCGATCCAGTTGAGTTGGTTGTATGGCTCCCTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

199

Amino Acids

22.22

Weight (kDa)

6.23

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	149 - 199	7.6e-11	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	296, 345
AccB7I	CCANNNNNTGG	1 cut(s)	541
AclWI	GGATC	1 cut(s)	557
AfaI	GTAC	2 cut(s)	309, 491
AfiI	CCNNNNNNNGG	1 cut(s)	541
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	5 cut(s)	95, 233, 291, 427, 464
AhdI	GACNNNNNGTC	1 cut(s)	118
AloI	GAACNNNNNNTCC	2 cut(s)	213, 245
AluBI	AGCT	2 cut(s)	98, 538
AluI	AGCT	2 cut(s)	98, 538
Alw26I	GTCTC	2 cut(s)	437, 500
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	129, 531
AspS9I	GGNCC	1 cut(s)	532
AsuHPI	GGTGA	2 cut(s)	168, 499
BaeGI	GKGCMC	1 cut(s)	348
BanI	GGYRCC	2 cut(s)	296, 345
BanII	GRGCYC	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	319, 402
BccI	CCATC	2 cut(s)	335, 345
BceAI	ACGGC	1 cut(s)	284
BcoDI	GTCTC	2 cut(s)	437, 500
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	15
BglI	GCCNNNNNGGC	1 cut(s)	159
BmeRI	GACNNNNNGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	532
BmiI	GGNNCC	3 cut(s)	298, 347, 587
BmrI	ACTGGG	1 cut(s)	346
BmsI	GCATC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	346
BpiI	GAAGAC	2 cut(s)	319, 402
Bpu10I	CCTNAGC	1 cut(s)	435
BsaBI	GATNNNNATC	1 cut(s)	561
BsaI	GGTCTC	2 cut(s)	437, 500
BsaJI	CCNNGG	3 cut(s)	24, 126, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	541
Bse1I	ACTGG	3 cut(s)	118, 341, 566
Bse8I	GATNNNNATC	1 cut(s)	561
BseDI	CCNNGG	3 cut(s)	24, 126, 179
BseGI	GGATG	1 cut(s)	346
BseJI	GATNNNNATC	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	541
BseMII	CTCAG	1 cut(s)	449
BseNI	ACTGG	3 cut(s)	118, 341, 566
BseRI	GAGGAG	1 cut(s)	78
BseSI	GKGCMC	1 cut(s)	348
BseYI	CCCAGC	1 cut(s)	534
BshFI	GGCC	2 cut(s)	131, 533
BshNI	GGYRCC	2 cut(s)	296, 345
BslFI	GGGAC	3 cut(s)	106, 212, 347
BslI	CCNNNNNNNGG	1 cut(s)	541
BsmAI	GTCTC	2 cut(s)	437, 500
BsmFI	GGGAC	3 cut(s)	106, 212, 347
BsnI	GGCC	2 cut(s)	131, 533
Bso31I	GGTCTC	2 cut(s)	437, 500
Bsp1286I	GDGCHC	2 cut(s)	348, 436
Bsp143I	GATC	1 cut(s)	562
BspANI	GGCC	2 cut(s)	131, 533
BspCNI	CTCAG	1 cut(s)	448
BspHI	TCATGA	1 cut(s)	553
BspLI	GGNNCC	3 cut(s)	298, 347, 587
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	2 cut(s)	296, 345
BspTNI	GGTCTC	2 cut(s)	437, 500
BsrI	ACTGG	3 cut(s)	118, 341, 566
BssECI	CCNNGG	3 cut(s)	24, 126, 179
BssMI	GATC	1 cut(s)	562
BssT1I	CCWWGG	3 cut(s)	24, 126, 179
Bst4CI	ACNGT	2 cut(s)	460, 494
BstDEI	CTNAG	2 cut(s)	105, 435
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	1 cut(s)	565
BstMAI	GTCTC	2 cut(s)	437, 500
BstMBI	GATC	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	348
BstV2I	GAAGAC	2 cut(s)	319, 402
BstXI	CCANNNNNNTGG	1 cut(s)	139
BsuRI	GGCC	2 cut(s)	131, 533
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	1 cut(s)	346
CciI	TCATGA	1 cut(s)	553
Cfr13I	GGNCC	1 cut(s)	532
Csp6I	GTAC	2 cut(s)	308, 490
CviAII	CATG	5 cut(s)	7, 383, 389, 503, 554
CviQI	GTAC	2 cut(s)	308, 490
DdeI	CTNAG	2 cut(s)	105, 435
DpnI	GATC	1 cut(s)	564
DpnII	GATC	1 cut(s)	562
DriI	GACNNNNNGTC	1 cut(s)	118
Eam1105I	GACNNNNNGTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	24, 126, 179
Eco24I	GRGCYC	1 cut(s)	436
Eco31I	GGTCTC	2 cut(s)	437, 500
EcoT14I	CCWWGG	3 cut(s)	24, 126, 179
EcoT38I	GRGCYC	1 cut(s)	436
ErhI	CCWWGG	3 cut(s)	24, 126, 179
FaeI	CATG	5 cut(s)	10, 386, 392, 506, 557
FaqI	GGGAC	3 cut(s)	106, 212, 347
FatI	CATG	5 cut(s)	6, 382, 388, 502, 553
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	436
FspBI	CTAG	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	538
HaeIII	GGCC	2 cut(s)	131, 533
Hin1II	CATG	5 cut(s)	10, 386, 392, 506, 557
HindIII	AAGCTT	1 cut(s)	96
HinfI	GANTC	1 cut(s)	319
HphI	GGTGA	2 cut(s)	168, 499
Hpy166II	GTNNAC	1 cut(s)	380
Hpy188III	TCNNGA	3 cut(s)	71, 147, 554
Hpy8I	GTNNAC	1 cut(s)	380
HpyAV	CCTTC	4 cut(s)	68, 359, 406, 443
HpyCH4III	ACNGT	2 cut(s)	460, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpyF3I	CTNAG	2 cut(s)	105, 435
Hsp92II	CATG	5 cut(s)	10, 386, 392, 506, 557
Kzo9I	GATC	1 cut(s)	562
LmnI	GCTCC	1 cut(s)	591
LpnPI	CCDG	7 cut(s)	120, 131, 179, 322, 422, 548, 579
LweI	GCATC	1 cut(s)	171
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	1 cut(s)	564
MboI	GATC	1 cut(s)	562
MboII	GAAGA	5 cut(s)	62, 65, 319, 407, 421
MhlI	GDGCHC	2 cut(s)	348, 436
MnlI	CCTC	6 cut(s)	56, 59, 80, 152, 218, 524
MslI	CAYNNNNRTG	2 cut(s)	137, 387
MwoI	GCNNNNNNNGC	1 cut(s)	159
NdeII	GATC	1 cut(s)	562
NlaIII	CATG	5 cut(s)	10, 386, 392, 506, 557
NlaIV	GGNNCC	3 cut(s)	298, 347, 587
NmuCI	GTSAC	1 cut(s)	505
NspI	RCATGY	1 cut(s)	386
PagI	TCATGA	1 cut(s)	553
PciI	ACATGT	1 cut(s)	382
PfeI	GAWTC	1 cut(s)	319
PflMI	CCANNNNNTGG	1 cut(s)	541
PscI	ACATGT	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	534
PspN4I	GGNNCC	3 cut(s)	298, 347, 587
PspPI	GGNCC	1 cut(s)	532
RsaI	GTAC	2 cut(s)	309, 491
RsaNI	GTAC	2 cut(s)	308, 490
RseI	CAYNNNNRTG	2 cut(s)	137, 387
Sau3AI	GATC	1 cut(s)	562
Sau96I	GGNCC	1 cut(s)	532
SduI	GDGCHC	2 cut(s)	348, 436
SetI	ASST	7 cut(s)	70, 100, 298, 313, 512, 516, 540
SfaNI	GCATC	1 cut(s)	171
SfcI	CTRYAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	137, 387
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	3 cut(s)	24, 126, 179
TaaI	ACNGT	2 cut(s)	460, 494
TaqI	TCGA	1 cut(s)	561
TaqII	GACCGA	1 cut(s)	461
TfiI	GAWTC	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	3 cut(s)	23, 90, 377
TspGWI	ACGGA	2 cut(s)	250, 287
Van91I	CCANNNNNTGG	1 cut(s)	541
XceI	RCATGY	1 cut(s)	386
XspI	CTAG	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.