Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

30528201 .. 30532172

Gene Structure 3972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0296400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGAAGGCTTTGGCTGTTGTTTGCCCCCCAAGAATTTCCTTCTCATGGCAACAACAACGACACCTTCGGTTTCGGTCCAAACCGAAATCCCAGCTCCGAATTAGCTCACTGTTTCGGGTCTCGTCGTGTTTGATAAAAGAAGGAGAAAGCGAATCAGAAAGGCAGAAATACAAAGGTGGTGGAGTGGTGGATGAGTTGTTGCTGAATGTGTTCAGGAACAAAATGGTTAAACAAGTGGGATGGGATTCCGATAAGCCGGGATACGATGGACTAATTGAAGTTGCCAACCGGATGATGCTTAACAACCCAACAAATTCTGATACTAAACAAGCTGCCGTCCGAGTTCTGATATCTTTGTTTCCACCATTCCTGTTAGAACTGTATAAACTGCTTATAGCTCCTATACAAGGCGGAAAAATAGCCGCCCTCATGGTTGCAAGGGTGACTGCAATCAGCTGTCAATGGCTCATGGGCCCCTGCACTGTTAATTCTGTCGACCTACCCGATGGGAATTCATGGACTAGTGGGGTGTTTGTCGAGAAATGCAAGTACTTGGAGGAAAGCAAATGTGTAGGGATCTGTGTCAATACTTGTAAGCTTCCAACTCAGTCTTTTTTCAAGGATTACATGGGTGTCCCTTTACTGATGGAACCGAACTTCAACGACTATAGCTGCCAGTTTAAATTCGGGGTCCTTCCTCCACTTTCCCAAGACGACGCCGCTCTCAAGGAGCCTTGCTTAGCCATATGCCCTAATGCTACCCGAAGAAGAGAAAGAAACATTAATATGGAGCAGTGTCCCAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

269

Amino Acids

30.22

Weight (kDa)

9.05

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
D27-like_C	PF13225	155 - 235	4.2e-35	Beta-carotene isomerase D27-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	722
AccI	GTMKAC	1 cut(s)	495
AciI	CCGC	3 cut(s)	411, 423, 720
AclWI	GGATC	1 cut(s)	584
AcsI	RAATTY	4 cut(s)	33, 313, 511, 683
AcyI	GRCGYC	1 cut(s)	717
AfaI	GTAC	1 cut(s)	551
AfiI	CCNNNNNNNGG	2 cut(s)	45, 407
AgsI	TTSAA	3 cut(s)	278, 619, 661
AhlI	ACTAGT	1 cut(s)	521
AluBI	AGCT	7 cut(s)	94, 105, 332, 398, 456, 598, 672
AluI	AGCT	7 cut(s)	94, 105, 332, 398, 456, 598, 672
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	584
AoxI	GGCC	1 cut(s)	472
ApaI	GGGCCC	1 cut(s)	476
ApeKI	GCWGC	2 cut(s)	332, 672
ApoI	RAATTY	4 cut(s)	33, 313, 511, 683
AseI	ATTAAT	1 cut(s)	783
Asp700I	GAANNNNTTC	1 cut(s)	209
AspS9I	GGNCC	4 cut(s)	75, 472, 473, 691
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	454
AvaII	GGWCC	2 cut(s)	75, 691
BaeGI	GKGCMC	1 cut(s)	476
BanII	GRGCYC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	319, 659
BccI	CCATC	4 cut(s)	234, 260, 500, 640
BceAI	ACGGC	1 cut(s)	320
BciVI	GTATCC	1 cut(s)	254
BcnI	CCSGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	124
BcuI	ACTAGT	1 cut(s)	521
BfaI	CTAG	1 cut(s)	522
BfmI	CTRYAG	1 cut(s)	667
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	4 cut(s)	333, 423, 673, 720
BlpI	GCTNAGC	1 cut(s)	739
BlsI	GCNGC	4 cut(s)	334, 424, 674, 721
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	2 cut(s)	75, 691
BmgT120I	GGNCC	4 cut(s)	75, 472, 473, 691
BmiI	GGNNCC	5 cut(s)	474, 475, 651, 692, 732
BmrFI	CCNGG	1 cut(s)	258
BmsI	GCATC	1 cut(s)	285
Bpu1102I	GCTNAGC	1 cut(s)	739
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	1 cut(s)	258
BsaHI	GRCGYC	1 cut(s)	717
BsaI	GGTCTC	1 cut(s)	124
BsaJI	CCNNGG	1 cut(s)	801
BsaWI	WCCGGW	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	2 cut(s)	45, 407
Bse1I	ACTGG	1 cut(s)	676
BseDI	CCNNGG	1 cut(s)	801
BseGI	GGATG	3 cut(s)	196, 245, 297
BseLI	CCNNNNNNNGG	2 cut(s)	45, 407
BseMII	CTCAG	1 cut(s)	620
BseNI	ACTGG	1 cut(s)	676
BseSI	GKGCMC	1 cut(s)	476
BseXI	GCAGC	2 cut(s)	319, 659
BseYI	CCCAGC	1 cut(s)	90
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	257, 289
BslFI	GGGAC	2 cut(s)	620, 783
BslI	CCNNNNNNNGG	2 cut(s)	45, 407
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	2 cut(s)	620, 783
BsnI	GGCC	1 cut(s)	474
Bso31I	GGTCTC	1 cut(s)	124
Bsp120I	GGGCCC	1 cut(s)	472
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	576
Bsp1720I	GCTNAGC	1 cut(s)	739
BspACI	CCGC	3 cut(s)	411, 423, 720
BspANI	GGCC	1 cut(s)	474
BspCNI	CTCAG	1 cut(s)	619
BspLI	GGNNCC	5 cut(s)	474, 475, 651, 692, 732
BspPI	GGATC	1 cut(s)	584
BspTNI	GGTCTC	1 cut(s)	124
BsrBI	CCGCTC	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	1 cut(s)	801
BssMI	GATC	1 cut(s)	576
BssNI	GRCGYC	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	801
Bst4CI	ACNGT	3 cut(s)	111, 381, 484
Bst6I	CTCTTC	1 cut(s)	763
BstACI	GRCGYC	1 cut(s)	717
BstDEI	CTNAG	2 cut(s)	606, 739
BstENI	CCTNNNNNAGG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	196, 245, 297
BstKTI	GATC	1 cut(s)	579
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	476
BstV1I	GCAGC	2 cut(s)	319, 659
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
BsuI	GTATCC	1 cut(s)	254
BsuRI	GGCC	1 cut(s)	474
BtsCI	GGATG	3 cut(s)	196, 245, 297
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	3 cut(s)	107, 480, 800
Cfr13I	GGNCC	4 cut(s)	75, 472, 473, 691
CseI	GACGC	1 cut(s)	725
Csp6I	GTAC	1 cut(s)	550
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	5 cut(s)	45, 430, 469, 516, 628
CviQI	GTAC	1 cut(s)	550
DdeI	CTNAG	2 cut(s)	606, 739
DpnI	GATC	1 cut(s)	578
DpnII	GATC	1 cut(s)	576
DraI	TTTAAA	1 cut(s)	682
Eam1104I	CTCTTC	1 cut(s)	763
EarI	CTCTTC	1 cut(s)	763
EciI	GGCGGA	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	801
Eco24I	GRGCYC	1 cut(s)	476
Eco31I	GGTCTC	1 cut(s)	124
Eco32I	GATATC	1 cut(s)	351
Eco47I	GGWCC	2 cut(s)	75, 691
EcoNI	CCTNNNNNAGG	1 cut(s)	405
EcoO109I	RGGNCCY	2 cut(s)	473, 691
EcoRI	GAATTC	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	351
EcoT14I	CCWWGG	1 cut(s)	801
EcoT38I	GRGCYC	1 cut(s)	476
ErhI	CCWWGG	1 cut(s)	801
FaeI	CATG	5 cut(s)	48, 433, 472, 519, 631
FaqI	GGGAC	2 cut(s)	620, 783
FatI	CATG	5 cut(s)	44, 429, 468, 515, 627
FauNDI	CATATG	1 cut(s)	746
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	333, 423, 673, 720
FokI	GGATG	3 cut(s)	203, 252, 304
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	4 cut(s)	333, 423, 673, 720
FspBI	CTAG	1 cut(s)	522
GluI	GCNGC	4 cut(s)	333, 423, 673, 720
GsaI	CCCAGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	474
HapII	CCGG	2 cut(s)	257, 289
HgaI	GACGC	1 cut(s)	725
Hin1I	GRCGYC	1 cut(s)	717
Hin1II	CATG	5 cut(s)	48, 433, 472, 519, 631
HincII	GTYRAC	1 cut(s)	496
HindII	GTYRAC	1 cut(s)	496
HindIII	AAGCTT	1 cut(s)	596
HinfI	GANTC	2 cut(s)	152, 245
HpaII	CCGG	2 cut(s)	257, 289
HphI	GGTGA	1 cut(s)	454
Hpy166II	GTNNAC	1 cut(s)	496
Hpy188I	TCNGA	6 cut(s)	98, 157, 250, 319, 341, 348
Hpy188III	TCNNGA	2 cut(s)	214, 538
Hpy8I	GTNNAC	1 cut(s)	496
Hpy99I	CGWCG	2 cut(s)	127, 719
HpyAV	CCTTC	4 cut(s)	49, 74, 134, 704
HpyCH4III	ACNGT	3 cut(s)	111, 381, 484
HpyCH4V	TGCA	4 cut(s)	437, 449, 480, 546
HpyF3I	CTNAG	2 cut(s)	606, 739
Hsp92I	GRCGYC	1 cut(s)	717
Hsp92II	CATG	5 cut(s)	48, 433, 472, 519, 631
Kzo9I	GATC	1 cut(s)	576
LmnI	GCTCC	4 cut(s)	99, 403, 730, 790
LpnPI	CCDG	7 cut(s)	104, 199, 270, 302, 383, 490, 689
Lsp1109I	GCAGC	2 cut(s)	319, 659
LweI	GCATC	1 cut(s)	285
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	1 cut(s)	578
MbiI	CCGCTC	1 cut(s)	722
MboI	GATC	1 cut(s)	576
MboII	GAAGA	2 cut(s)	777, 780
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	7 cut(s)	33, 99, 273, 313, 487, 511, 683
MmeI	TCCRAC	1 cut(s)	626
MnlI	CCTC	3 cut(s)	437, 550, 708
MroXI	GAANNNNTTC	1 cut(s)	209
MseI	TTAA	5 cut(s)	228, 300, 486, 681, 783
MslI	CAYNNNNRTG	1 cut(s)	785
MspA1I	CMGCKG	1 cut(s)	456
MspI	CCGG	2 cut(s)	257, 289
MspR9I	CCNGG	1 cut(s)	258
NciI	CCSGG	1 cut(s)	258
NdeI	CATATG	1 cut(s)	746
NdeII	GATC	1 cut(s)	576
NlaIII	CATG	5 cut(s)	48, 433, 472, 519, 631
NlaIV	GGNNCC	5 cut(s)	474, 475, 651, 692, 732
NmuCI	GTSAC	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	501
PdmI	GAANNNNTTC	1 cut(s)	209
PfeI	GAWTC	2 cut(s)	152, 245
PkrI	GCNGC	4 cut(s)	334, 424, 674, 721
PpuMI	RGGWCCY	1 cut(s)	691
PshBI	ATTAAT	1 cut(s)	783
Psp5II	RGGWCCY	1 cut(s)	691
PspFI	CCCAGC	1 cut(s)	90
PspN4I	GGNNCC	5 cut(s)	474, 475, 651, 692, 732
PspOMI	GGGCCC	1 cut(s)	472
PspPI	GGNCC	4 cut(s)	75, 472, 473, 691
PspPPI	RGGWCCY	1 cut(s)	691
PsuI	RGATCY	1 cut(s)	576
PvuII	CAGCTG	1 cut(s)	456
RsaI	GTAC	1 cut(s)	551
RsaNI	GTAC	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	785
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	5 cut(s)	228, 300, 486, 681, 783
SatI	GCNGC	4 cut(s)	333, 423, 673, 720
Sau3AI	GATC	1 cut(s)	576
Sau96I	GGNCC	4 cut(s)	75, 472, 473, 691
ScaI	AGTACT	1 cut(s)	551
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	476
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	667
SinI	GGWCC	2 cut(s)	75, 691
SmiMI	CAYNNNNRTG	1 cut(s)	785
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
SpeI	ACTAGT	1 cut(s)	521
Sse9I	AATT	7 cut(s)	33, 99, 273, 313, 487, 511, 683
SsiI	CCGC	3 cut(s)	411, 423, 720
SspMI	CTAG	1 cut(s)	522
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	801
TaaI	ACNGT	3 cut(s)	111, 381, 484
TaqI	TCGA	2 cut(s)	495, 537
TaqII	GACCGA	1 cut(s)	63
TasI	AATT	7 cut(s)	33, 99, 273, 313, 487, 511, 683
TatI	WGTACW	1 cut(s)	549
TauI	GCSGC	2 cut(s)	425, 722
TfiI	GAWTC	2 cut(s)	152, 245
Tru1I	TTAA	5 cut(s)	228, 300, 486, 681, 783
Tru9I	TTAA	5 cut(s)	228, 300, 486, 681, 783
TscAI	CASTG	3 cut(s)	114, 487, 800
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	2 cut(s)	332, 672
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	2 cut(s)	17, 504
TspRI	CASTG	3 cut(s)	114, 487, 800
VpaK11BI	GGWCC	2 cut(s)	75, 691
VspI	ATTAAT	1 cut(s)	783
XagI	CCTNNNNNAGG	1 cut(s)	405
XapI	RAATTY	4 cut(s)	33, 313, 511, 683
XmiI	GTMKAC	1 cut(s)	495
XmnI	GAANNNNTTC	1 cut(s)	209
XspI	CTAG	1 cut(s)	522
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.