Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

17165493 .. 17167774

Gene Structure 2282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG098000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGGTCCAAAGAAGGGTGGAAAAGCTCCAGTTGCTGCTTCTAAGAAGAAGCCGGAGAAGGTGGTGAACCCACTTTTCGAGAAGCGGCCGAAGCAGTTTGGGATCGGAGGGGCGTTGCCACCCAAGAGGGATCTGACCCGCTTCGTTAAATGGCCCAAGGCTGTTCAGATTCAGAGGAAGAAAAGGATCCTCAAGCAGAGGTTGAAGGTTCCTCCAGCTCTGAACCAGTTCACCAAGACCCTCGACAAAAACCTCGCTACAAGTCTGTTCAAGATGCTTTTGAAGTACAGGCCTGAGGACAAAGCAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCACAGGCAGAAACTGAAGGAAAAACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAATATGGTCTCAACCATGTCACCTACCTCATTGAGCAGAATAAGGCTCAACTTGTAGTTATTGCTCATGATGTGGATCCGATAGAGTTGGTTGTCTGGCTCCCTGCCTTGTGCAGGAAGATGGAAATCCCCTACTGCATTGTGAAGGGCAAAGCACGCTTGGGAGCGATCGTCCATCAGAAAACTGCTTCAGTTTTGTGCCTGACAACGGTCAAGAATGAAGATAAGATGGAGTTCAGCAAGGTTTTGGAAGCAATAAAGGTGGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

218

Amino Acids

24.62

Weight (kDa)

10.15

Isoelectric Point (pI)

31.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	116 - 207	1.9e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	85, 139
AclWI	GGATC	6 cut(s)	110, 138, 181, 194, 458, 471
AcoI	YGGCCR	1 cut(s)	86
AcuI	CTGAAG	2 cut(s)	369, 561
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	3 cut(s)	14, 501, 595
AgsI	TTSAA	5 cut(s)	205, 271, 283, 328, 365
AluBI	AGCT	2 cut(s)	26, 218
AluI	AGCT	2 cut(s)	26, 218
Alw26I	GTCTC	1 cut(s)	401
AlwI	GGATC	6 cut(s)	110, 138, 181, 194, 458, 471
AlwNI	CAGNNNCTG	2 cut(s)	35, 347
AoxI	GGCC	3 cut(s)	86, 152, 290
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	5, 153
AsuHPI	GGTGA	3 cut(s)	76, 223, 400
AvaII	GGWCC	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	294
BaeGI	GKGCMC	1 cut(s)	337
BamHI	GGATCC	2 cut(s)	186, 463
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	3 cut(s)	502, 570, 610
BcoDI	GTCTC	1 cut(s)	401
BisI	GCNGC	2 cut(s)	36, 86
BlsI	GCNGC	2 cut(s)	37, 87
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	5, 153
BmiI	GGNNCC	5 cut(s)	6, 188, 210, 465, 488
BmsI	GCATC	1 cut(s)	264
BoxI	GACNNNNGTC	1 cut(s)	596
BpmI	CTGGAG	2 cut(s)	12, 198
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	2 cut(s)	462, 512
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	543, 573
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 501, 595
Bse1I	ACTGG	2 cut(s)	29, 226
Bse21I	CCTNAGG	1 cut(s)	294
Bse8I	GATNNNNATC	2 cut(s)	462, 512
BseDI	CCNNGG	1 cut(s)	156
BseJI	GATNNNNATC	2 cut(s)	462, 512
BseLI	CCNNNNNNNGG	3 cut(s)	14, 501, 595
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	2 cut(s)	29, 226
BseSI	GKGCMC	1 cut(s)	337
BseX3I	CGGCCG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	22
BsgI	GTGCAG	1 cut(s)	520
Bsh1285I	CGRYCG	2 cut(s)	89, 558
BshFI	GGCC	3 cut(s)	88, 154, 292
BsiEI	CGRYCG	2 cut(s)	89, 558
BsiSI	CCGG	1 cut(s)	53
BslI	CCNNNNNNNGG	3 cut(s)	14, 501, 595
BsmAI	GTCTC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	88, 154, 292
Bso31I	GGTCTC	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	5 cut(s)	102, 130, 186, 463, 555
BspACI	CCGC	2 cut(s)	85, 139
BspANI	GGCC	3 cut(s)	88, 154, 292
BspCNI	CTCAG	1 cut(s)	286
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	5 cut(s)	6, 188, 210, 465, 488
BspPI	GGATC	6 cut(s)	110, 138, 181, 194, 458, 471
BspTNI	GGTCTC	1 cut(s)	401
BsrI	ACTGG	2 cut(s)	29, 226
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	5 cut(s)	102, 130, 186, 463, 555
BssT1I	CCWWGG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	361, 598
BstC8I	GCNNGC	1 cut(s)	544
BstDEI	CTNAG	2 cut(s)	42, 294
BstENI	CCTNNNNNAGG	1 cut(s)	499
BstKTI	GATC	5 cut(s)	105, 133, 189, 466, 558
BstMAI	GTCTC	1 cut(s)	401
BstMBI	GATC	5 cut(s)	102, 130, 186, 463, 555
BstMCI	CGRYCG	2 cut(s)	89, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 91, 543
BstPAI	GACNNNNGTC	1 cut(s)	596
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	3 cut(s)	130, 186, 463
BstYI	RGATCY	3 cut(s)	130, 186, 463
BstZI	CGGCCG	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	3 cut(s)	88, 154, 292
Cac8I	GCNNGC	1 cut(s)	544
CaiI	CAGNNNCTG	2 cut(s)	35, 347
CciI	TCATGA	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	5, 153
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	1 cut(s)	286
CspCI	CAANNNNNGTGG	1 cut(s)	630
CviAII	CATG	2 cut(s)	404, 455
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	42, 294
DpnI	GATC	5 cut(s)	104, 132, 188, 465, 557
DpnII	GATC	5 cut(s)	102, 130, 186, 463, 555
EaeI	YGGCCR	1 cut(s)	86
EagI	CGGCCG	1 cut(s)	86
EclXI	CGGCCG	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	1 cut(s)	5
Eco52I	CGGCCG	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	369, 561
Eco81I	CCTNAGG	1 cut(s)	294
EcoNI	CCTNNNNNAGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	156
FaeI	CATG	2 cut(s)	407, 458
FaiI	YATR	3 cut(s)	393, 405, 456
FatI	CATG	2 cut(s)	403, 454
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	2 cut(s)	36, 86
Fsp4HI	GCNGC	2 cut(s)	36, 86
GluI	GCNGC	2 cut(s)	36, 86
GsuI	CTGGAG	2 cut(s)	12, 198
HaeIII	GGCC	3 cut(s)	88, 154, 292
HapII	CCGG	1 cut(s)	53
HgaI	GACGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	407, 458
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	76, 223, 400
Hpy166II	GTNNAC	2 cut(s)	67, 231
Hpy188I	TCNGA	7 cut(s)	107, 135, 168, 174, 222, 468, 567
Hpy188III	TCNNGA	4 cut(s)	79, 271, 455, 601
Hpy8I	GTNNAC	2 cut(s)	67, 231
HpyAV	CCTTC	6 cut(s)	7, 52, 199, 307, 344, 526
HpyCH4III	ACNGT	2 cut(s)	361, 598
HpyCH4V	TGCA	2 cut(s)	501, 525
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 91, 543
HpyF3I	CTNAG	2 cut(s)	42, 294
Hsp92II	CATG	2 cut(s)	407, 458
Kzo9I	GATC	5 cut(s)	102, 130, 186, 463, 555
LmnI	GCTCC	4 cut(s)	31, 316, 492, 551
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	264
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	5 cut(s)	104, 132, 188, 465, 557
MboI	GATC	5 cut(s)	102, 130, 186, 463, 555
MboII	GAAGA	5 cut(s)	58, 190, 322, 517, 620
MflI	RGATCY	3 cut(s)	130, 186, 463
MhlI	GDGCHC	1 cut(s)	337
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	1 cut(s)	147
MspI	CCGG	1 cut(s)	53
MwoI	GCNNNNNNNGC	3 cut(s)	32, 91, 543
NdeII	GATC	5 cut(s)	102, 130, 186, 463, 555
NlaIII	CATG	2 cut(s)	407, 458
NlaIV	GGNNCC	5 cut(s)	6, 188, 210, 465, 488
NmuCI	GTSAC	1 cut(s)	406
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	37, 87
Ple19I	CGATCG	1 cut(s)	558
PshAI	GACNNNNGTC	1 cut(s)	596
PspN4I	GGNNCC	5 cut(s)	6, 188, 210, 465, 488
PspPI	GGNCC	2 cut(s)	5, 153
PstNI	CAGNNNCTG	2 cut(s)	35, 347
PsuI	RGATCY	3 cut(s)	130, 186, 463
PvuI	CGATCG	1 cut(s)	558
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	147
SatI	GCNGC	2 cut(s)	36, 86
Sau3AI	GATC	5 cut(s)	102, 130, 186, 463, 555
Sau96I	GGNCC	2 cut(s)	5, 153
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	1 cut(s)	264
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	85, 139
StuI	AGGCCT	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	361, 598
TaqI	TCGA	2 cut(s)	78, 243
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	169
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	1 cut(s)	621
VpaK11BI	GGWCC	1 cut(s)	5
XagI	CCTNNNNNAGG	1 cut(s)	499
XmnI	GAANNNNTTC	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.