Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

23242561 .. 23244397

Gene Structure 1837 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G62870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCACCGAAGAAGGGAGTTAAAGTGGCTTCAAAGAAGAAGCCGGAGAAAGTTACCAACCCATTGTTTGAGAGACGCCCAAAGCAATTCGGTATTGGTGGCGCTTTGCCTCCTAAGAAGGATCTTTCTCGTTACATCAAATGGCCTAAGTCAATCCGTCTTCAAAGGCAGAAGCGTATCCTTAAGCAGAGGTTGAAGGTTCCTCCAGCTCTTAACCAGTTCACCAAGACCCTTGATAAGAATCTCGCCACCAGCCTCTTCAAGATTCTTCTGAAGTATAGGCCAGAGGACAAAGCCGCAAAGAAGGAACGCCTTTTGAACAAGGCTCAAGCTGAGGCAGAAGGAAAGCCTGCTGAATCCAAGAAGCCCATTGTTGTTAAGTATGGTCTCAACCATGTGACTTACCTCATCGAGCAGAACAAGGCACAGCTTGTGGTCATTGCACACGATGTTGACCCTATCGAGTTGGTGGTCTGGTTACCTGCACTCTGCAGGAAAATGGAAGTCCCTTACTGCATTGTTAAGGGAAAATCTCGTCTTGGAGCGGTCGTTCACCAGAAGACTGCTGCTGCCTTGTGCTTGACCACTGTCAAGAACGAGGACAAGCTTGAGTTCAGCAAAATCCTCGAGGCCATCAAGGCTAACTTCAACGACAAGTACGAGGAGTACAGGAAGAAGTGGGGAGGTGGCATAATGGGATCCAAGTCTCAAGCCAAGACCAAAGCTAAGGAGAGGGTTATTGCTAAGGAGGCTGCCCAGAGAATGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005911 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030054 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

256

Amino Acids

29.03

Weight (kDa)

10.15

Isoelectric Point (pI)

29.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	113 - 202	1.3e-25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	490
AccB1I	GGYRCC	1 cut(s)	4
AccBSI	CCGCTC	1 cut(s)	545
AciI	CCGC	2 cut(s)	297, 545
AclWI	GGATC	3 cut(s)	129, 693, 706
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	76
AfaI	GTAC	2 cut(s)	659, 668
AfiI	CCNNNNNNNGG	1 cut(s)	14
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	6 cut(s)	33, 164, 196, 262, 319, 649
AloI	GAACNNNNNNTCC	2 cut(s)	534, 566
AluBI	AGCT	5 cut(s)	209, 332, 430, 607, 725
AluI	AGCT	5 cut(s)	209, 332, 430, 607, 725
Alw26I	GTCTC	3 cut(s)	67, 392, 711
AlwI	GGATC	3 cut(s)	129, 693, 706
Ama87I	CYCGRG	1 cut(s)	626
AoxI	GGCC	3 cut(s)	143, 281, 630
ApeKI	GCWGC	3 cut(s)	566, 569, 752
AspLEI	GCGC	1 cut(s)	104
AsuHPI	GGTGA	2 cut(s)	214, 545
AvaI	CYCGRG	1 cut(s)	626
BamHI	GGATCC	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	152, 566
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	3 cut(s)	553, 556, 739
BccI	CCATC	1 cut(s)	641
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciVI	GTATCC	1 cut(s)	188
BcoDI	GTCTC	3 cut(s)	67, 392, 711
BfaI	CTAG	1 cut(s)	769
BfmI	CTRYAG	1 cut(s)	490
BfoI	RGCGCY	1 cut(s)	105
BfrI	CTTAAG	1 cut(s)	182
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	1 cut(s)	188
BglI	GCCNNNNNGGC	1 cut(s)	638
BisI	GCNGC	4 cut(s)	297, 567, 570, 753
BlsI	GCNGC	4 cut(s)	298, 568, 571, 754
BmeT110I	CYCGRG	1 cut(s)	626
BmiI	GGNNCC	3 cut(s)	6, 201, 700
BoxI	GACNNNNGTC	1 cut(s)	587
BpiI	GAAGAC	2 cut(s)	152, 566
BpmI	CTGGAG	1 cut(s)	189
Bpu10I	CCTNAGC	3 cut(s)	333, 726, 744
BpuEI	CTTGAG	3 cut(s)	312, 629, 693
BsaBI	GATNNNNATC	1 cut(s)	240
BsaHI	GRCGYC	1 cut(s)	76
BsaI	GGTCTC	1 cut(s)	392
BsaXI	ACNNNNNCTCC	4 cut(s)	9, 39, 534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	1 cut(s)	438
Bse8I	GATNNNNATC	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	217
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	3 cut(s)	553, 556, 739
BsgI	GTGCAG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	549
BshFI	GGCC	3 cut(s)	145, 283, 632
BshNI	GGYRCC	1 cut(s)	4
BsiEI	CGRYCG	1 cut(s)	549
BsiHKCI	CYCGRG	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	491
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmAI	GTCTC	3 cut(s)	67, 392, 711
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	491
BsnI	GGCC	3 cut(s)	145, 283, 632
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	626
Bsp143I	GATC	2 cut(s)	121, 698
BspACI	CCGC	2 cut(s)	297, 545
BspANI	GGCC	3 cut(s)	145, 283, 632
BspCNI	CTCAG	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	6, 201, 700
BspMAI	CTGCAG	1 cut(s)	494
BspMI	ACCTGC	1 cut(s)	490
BspPI	GGATC	3 cut(s)	129, 693, 706
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	545
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	1 cut(s)	217
BssMI	GATC	2 cut(s)	121, 698
BssNI	GRCGYC	1 cut(s)	76
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	76
BstAFI	CTTAAG	1 cut(s)	182
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	5 cut(s)	114, 147, 333, 726, 744
BstEII	GGTNACC	1 cut(s)	477
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	124, 701
BstMAI	GTCTC	3 cut(s)	67, 392, 711
BstMBI	GATC	2 cut(s)	121, 698
BstMCI	CGRYCG	1 cut(s)	549
BstMWI	GCNNNNNNNGC	2 cut(s)	638, 749
BstPAI	GACNNNNGTC	1 cut(s)	587
BstPI	GGTNACC	1 cut(s)	477
BstSFI	CTRYAG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	553, 556, 739
BstV2I	GAAGAC	2 cut(s)	152, 566
BstX2I	RGATCY	2 cut(s)	121, 698
BstYI	RGATCY	2 cut(s)	121, 698
BsuI	GTATCC	1 cut(s)	188
BsuRI	GGCC	3 cut(s)	145, 283, 632
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	1 cut(s)	490
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	1 cut(s)	104
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	2 cut(s)	658, 667
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	2 cut(s)	658, 667
DdeI	CTNAG	5 cut(s)	114, 147, 333, 726, 744
DpnI	GATC	2 cut(s)	123, 700
DpnII	GATC	2 cut(s)	121, 698
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco31I	GGTCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	293
Eco88I	CYCGRG	1 cut(s)	626
Eco91I	GGTNACC	1 cut(s)	477
EcoO65I	GGTNACC	1 cut(s)	477
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	1 cut(s)	398
FaiI	YATR	4 cut(s)	279, 384, 396, 692
FalI	AAGNNNNNCTT	2 cut(s)	629, 661
FaqI	GGGAC	1 cut(s)	491
FatI	CATG	1 cut(s)	394
Fnu4HI	GCNGC	4 cut(s)	297, 567, 570, 753
Fsp4HI	GCNGC	4 cut(s)	297, 567, 570, 753
FspBI	CTAG	1 cut(s)	769
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	4 cut(s)	297, 567, 570, 753
GsuI	CTGGAG	1 cut(s)	189
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	145, 283, 632
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	84
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	76
Hin1II	CATG	1 cut(s)	398
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	3 cut(s)	241, 265, 356
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	2 cut(s)	214, 545
Hpy166II	GTNNAC	3 cut(s)	222, 454, 553
Hpy188I	TCNGA	1 cut(s)	273
Hpy188III	TCNNGA	2 cut(s)	262, 592
Hpy8I	GTNNAC	3 cut(s)	222, 454, 553
HpyAV	CCTTC	5 cut(s)	7, 112, 190, 298, 335
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4V	TGCA	4 cut(s)	443, 485, 492, 516
HpyF10VI	GCNNNNNNNGC	2 cut(s)	638, 749
HpyF3I	CTNAG	5 cut(s)	114, 147, 333, 726, 744
Hsp92I	GRCGYC	1 cut(s)	76
Hsp92II	CATG	1 cut(s)	398
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	121, 698
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	3 cut(s)	553, 556, 739
MaeI	CTAG	1 cut(s)	769
MaeIII	GTNAC	4 cut(s)	52, 131, 397, 477
MalI	GATC	2 cut(s)	123, 700
MbiI	CCGCTC	1 cut(s)	545
MboI	GATC	2 cut(s)	121, 698
MboII	GAAGA	7 cut(s)	22, 49, 152, 250, 260, 571, 685
MflI	RGATCY	2 cut(s)	121, 698
MluCI	AATT	1 cut(s)	86
MseI	TTAA	5 cut(s)	21, 183, 213, 378, 522
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	638, 749
NdeII	GATC	2 cut(s)	121, 698
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	6, 201, 700
NmuCI	GTSAC	1 cut(s)	397
PaeR7I	CTCGAG	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	657
PfeI	GAWTC	3 cut(s)	241, 265, 356
PkrI	GCNGC	4 cut(s)	298, 568, 571, 754
PshAI	GACNNNNGTC	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	477
PspN4I	GGNNCC	3 cut(s)	6, 201, 700
PspXI	VCTCGAGB	1 cut(s)	626
PstI	CTGCAG	1 cut(s)	494
PsuI	RGATCY	2 cut(s)	121, 698
RsaI	GTAC	2 cut(s)	659, 668
RsaNI	GTAC	2 cut(s)	658, 667
SaqAI	TTAA	5 cut(s)	21, 183, 213, 378, 522
SatI	GCNGC	4 cut(s)	297, 567, 570, 753
Sau3AI	GATC	2 cut(s)	121, 698
SfcI	CTRYAG	1 cut(s)	490
Sfr274I	CTCGAG	1 cut(s)	626
SlaI	CTCGAG	1 cut(s)	626
SmlI	CTYRAG	5 cut(s)	182, 327, 608, 626, 708
SmoI	CTYRAG	5 cut(s)	182, 327, 608, 626, 708
Sse9I	AATT	1 cut(s)	86
SsiI	CCGC	2 cut(s)	297, 545
SspMI	CTAG	1 cut(s)	769
TaaI	ACNGT	1 cut(s)	589
TaqI	TCGA	3 cut(s)	411, 462, 627
TasI	AATT	1 cut(s)	86
TatI	WGTACW	1 cut(s)	666
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	3 cut(s)	241, 265, 356
Tru1I	TTAA	5 cut(s)	21, 183, 213, 378, 522
Tru9I	TTAA	5 cut(s)	21, 183, 213, 378, 522
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	397
TseI	GCWGC	3 cut(s)	566, 569, 752
Tsp45I	GTSAC	1 cut(s)	397
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	182
XhoI	CTCGAG	1 cut(s)	626
XspI	CTAG	1 cut(s)	769

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.