Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003238.1

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

182773 .. 183684

Gene Structure 912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003238.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

atgcttctgaagtacaggcctgaagacaaagcagagaagaaggagcatcttttgaaaagggctcaggcagagactgaaggaaagactgttgaagccaagaagcctattgttgtgaagtacggtctcaaccatgtcacctacctcattgagcagaacaaggcccagcttgtggttatcgctcatgatgtcgatccaattgagttggttgtatggctccctgctttatgcagaaagacggagatcccctattgcattgtgaagggcaaagcacgtttggaagcgctgcctctctattactgttcgcccatgcctcttcttcctctcaatctttccgattccctaaactccaaagctttcctttctctcatcctcctccccaaacccaaatcttatgttcctcgctacaagccttacccactctccctcagctctccacatgaacgctcccacatcggaatggaagccctccttttaggtctcactgcaattctcacacccttctttgttttctattcattctttgatgggtttaatctgattcgtcgatttacttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

184

Amino Acids

21.04

Weight (kDa)

9.35

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AclWI	GGATC	2 cut(s)	185, 235
AcuI	CTGAAG	3 cut(s)	29, 42, 96
AfaI	GTAC	2 cut(s)	14, 119
AfeI	AGCGCT	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	55, 92
AluBI	AGCT	3 cut(s)	166, 353, 429
AluI	AGCT	3 cut(s)	166, 353, 429
Alw26I	GTCTC	3 cut(s)	65, 128, 482
AlwI	GGATC	2 cut(s)	185, 235
AlwNI	CAGNNNCTG	1 cut(s)	74
Aor51HI	AGCGCT	1 cut(s)	282
AoxI	GGCC	2 cut(s)	17, 159
ApeKI	GCWGC	1 cut(s)	283
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	425
BbvI	GCAGC	1 cut(s)	270
BccI	CCATC	1 cut(s)	518
BcoDI	GTCTC	3 cut(s)	65, 128, 482
BfoI	RGCGCY	1 cut(s)	284
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	1 cut(s)	55
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	2 cut(s)	63, 425
BsaBI	GATNNNNATC	1 cut(s)	189
BsaI	GGTCTC	2 cut(s)	128, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	404, 434
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse8I	GATNNNNATC	1 cut(s)	189
BseGI	GGATG	1 cut(s)	366
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	77, 439
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	270
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	2 cut(s)	19, 161
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	3 cut(s)	65, 128, 482
BsnI	GGCC	2 cut(s)	19, 161
Bso31I	GGTCTC	2 cut(s)	128, 482
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	2 cut(s)	190, 240
BspANI	GGCC	2 cut(s)	19, 161
BspCNI	CTCAG	2 cut(s)	76, 438
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	2 cut(s)	185, 235
BspTNI	GGTCTC	2 cut(s)	128, 482
BssMI	GATC	2 cut(s)	190, 240
Bst4CI	ACNGT	3 cut(s)	88, 122, 299
Bst6I	CTCTTC	1 cut(s)	318
BstDEI	CTNAG	2 cut(s)	63, 425
BstF5I	GGATG	1 cut(s)	366
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	2 cut(s)	193, 243
BstMAI	GTCTC	3 cut(s)	65, 128, 482
BstMBI	GATC	2 cut(s)	190, 240
BstV1I	GCAGC	1 cut(s)	270
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	19, 161
BtsCI	GGATG	1 cut(s)	366
BtsI	GCAGTG	1 cut(s)	480
BtsIMutI	CAGTG	1 cut(s)	480
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	13, 118
CviAII	CATG	4 cut(s)	131, 182, 307, 437
CviQI	GTAC	2 cut(s)	13, 118
DdeI	CTNAG	2 cut(s)	63, 425
DpnI	GATC	2 cut(s)	192, 242
DpnII	GATC	2 cut(s)	190, 240
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	2 cut(s)	128, 482
Eco47III	AGCGCT	1 cut(s)	282
Eco57I	CTGAAG	3 cut(s)	29, 42, 96
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	4 cut(s)	134, 185, 310, 440
FaiI	YATR	7 cut(s)	132, 183, 211, 226, 308, 393, 438
FalI	AAGNNNNNCTT	4 cut(s)	342, 374, 453, 485
FatI	CATG	4 cut(s)	130, 181, 306, 436
Fnu4HI	GCNGC	1 cut(s)	284
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	64
Fsp4HI	GCNGC	1 cut(s)	284
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	284
GsaI	CCCAGC	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	19, 161
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	4 cut(s)	134, 185, 310, 440
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	351
HinfI	GANTC	2 cut(s)	335, 538
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	4 cut(s)	9, 334, 455, 537
Hpy188III	TCNNGA	1 cut(s)	182
Hpy99I	CGWCG	1 cut(s)	546
HpyAV	CCTTC	4 cut(s)	34, 71, 253, 508
HpyCH4III	ACNGT	3 cut(s)	88, 122, 299
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	228, 252, 485
HpyF3I	CTNAG	2 cut(s)	63, 425
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	4 cut(s)	134, 185, 310, 440
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	2 cut(s)	190, 240
LmnI	GCTCC	3 cut(s)	43, 219, 449
LpnPI	CCDG	4 cut(s)	33, 50, 176, 231
Lsp1109I	GCAGC	1 cut(s)	270
LweI	GCATC	1 cut(s)	55
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	192, 242
MboI	GATC	2 cut(s)	190, 240
MboII	GAAGA	4 cut(s)	35, 49, 305, 308
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	64
MluCI	AATT	2 cut(s)	195, 486
MnlI	CCTC	9 cut(s)	152, 297, 321, 330, 380, 383, 408, 434, 476
MseI	TTAA	2 cut(s)	531, 553
MslI	CAYNNNNRTG	1 cut(s)	455
MunI	CAATTG	1 cut(s)	195
NdeII	GATC	2 cut(s)	190, 240
NlaIII	CATG	4 cut(s)	134, 185, 310, 440
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	19
PfeI	GAWTC	2 cut(s)	335, 538
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	2 cut(s)	14, 119
RsaNI	GTAC	2 cut(s)	13, 118
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	2 cut(s)	531, 553
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	190, 240
Sau96I	GGNCC	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	7 cut(s)	140, 144, 168, 274, 355, 431, 478
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	455
Sse9I	AATT	2 cut(s)	195, 486
SseBI	AGGCCT	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	88, 122, 299
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	2 cut(s)	189, 544
TasI	AATT	2 cut(s)	195, 486
TatI	WGTACW	1 cut(s)	12
TfiI	GAWTC	2 cut(s)	335, 538
Tru1I	TTAA	2 cut(s)	531, 553
Tru9I	TTAA	2 cut(s)	531, 553
TscAI	CASTG	1 cut(s)	487
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	2 cut(s)	453, 504
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	1 cut(s)	487
Van91I	CCANNNNNTGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.