Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8267901.1

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 815

Gene Structure 814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8267901.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 292 bp

ctgttcgagaagcgcccgaagcagttcgggatcggaggggcattgcctccgaagagggatctgacccggttcgtcaaatggcccaaggctgtgcagattcagaggaagaagaggatcctcaagcagaggctcaaggtcccaccagctctcaatcagttcaccaagacccttgataagaacctcgctacaagcctgttcaagatgctcctgaagtacaggcctgaagacaaagccgagaagaaggagcgtcttttgaaaagggcgcaggcagagactgaaggcaagactgttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

97

Amino Acids

11.37

Weight (kDa)

10.81

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	38, 66, 109, 122
AcuI	CTGAAG	2 cut(s)	230, 243
AfaI	GTAC	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	199, 256
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	4 cut(s)	38, 66, 109, 122
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	80, 218
Asp700I	GAANNNNTTC	1 cut(s)	23
AspLEI	GCGC	2 cut(s)	15, 265
AspS9I	GGNCC	2 cut(s)	81, 136
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	136
BamHI	GGATCC	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	231
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	266
BfoI	RGCGCY	1 cut(s)	16
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	81, 136
BmiI	GGNNCC	2 cut(s)	116, 138
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	231
BpuEI	CTTGAG	2 cut(s)	104, 116
BpuMI	CCSGG	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	84
BseMI	GCAATG	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	2 cut(s)	82, 220
BsiSI	CCGG	1 cut(s)	67
BslFI	GGGAC	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	266
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	82, 220
Bsp143I	GATC	3 cut(s)	30, 58, 114
BspANI	GGCC	2 cut(s)	82, 220
BspLI	GGNNCC	2 cut(s)	116, 138
BspPI	GGATC	4 cut(s)	38, 66, 109, 122
BsrDI	GCAATG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	3 cut(s)	30, 58, 114
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	289
Bst6I	CTCTTC	2 cut(s)	47, 104
BstC8I	GCNNGC	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	16
BstHHI	GCGC	2 cut(s)	15, 265
BstKTI	GATC	3 cut(s)	33, 61, 117
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	3 cut(s)	30, 58, 114
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstSCI	CCNGG	1 cut(s)	65
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	58, 114
BstYI	RGATCY	2 cut(s)	58, 114
BsuRI	GGCC	2 cut(s)	82, 220
Cac8I	GCNNGC	1 cut(s)	267
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	2 cut(s)	15, 265
Cfr13I	GGNCC	2 cut(s)	81, 136
CseI	GACGC	1 cut(s)	236
Csp6I	GTAC	1 cut(s)	214
CviJI	RGCY	7 cut(s)	82, 89, 130, 146, 192, 220, 233
CviKI_1	RGCY	7 cut(s)	82, 89, 130, 146, 192, 220, 233
CviQI	GTAC	1 cut(s)	214
DpnI	GATC	3 cut(s)	32, 60, 116
DpnII	GATC	3 cut(s)	30, 58, 114
Eam1104I	CTCTTC	2 cut(s)	47, 104
EarI	CTCTTC	2 cut(s)	47, 104
Eco130I	CCWWGG	1 cut(s)	84
Eco147I	AGGCCT	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	2 cut(s)	230, 243
EcoO109I	RGGNCCY	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaqI	GGGAC	1 cut(s)	122
GlaI	GCGC	2 cut(s)	14, 264
HaeII	RGCGCY	1 cut(s)	16
HaeIII	GGCC	2 cut(s)	82, 220
HapII	CCGG	1 cut(s)	67
HgaI	GACGC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	15, 265
Hin6I	GCGC	2 cut(s)	13, 263
HinP1I	GCGC	2 cut(s)	13, 263
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	67
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	4 cut(s)	35, 51, 63, 102
Hpy188III	TCNNGA	4 cut(s)	7, 28, 199, 208
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	235, 272
HpyCH4III	ACNGT	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	94
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HspAI	GCGC	2 cut(s)	13, 263
Kzo9I	GATC	3 cut(s)	30, 58, 114
LmnI	GCTCC	2 cut(s)	210, 244
LpnPI	CCDG	7 cut(s)	80, 156, 202, 206, 221, 234, 251
LweI	GCATC	1 cut(s)	192
MalI	GATC	3 cut(s)	32, 60, 116
MboI	GATC	3 cut(s)	30, 58, 114
MboII	GAAGA	5 cut(s)	64, 118, 121, 236, 250
MflI	RGATCY	2 cut(s)	58, 114
MnlI	CCTC	8 cut(s)	29, 48, 57, 96, 105, 120, 128, 191
MroXI	GAANNNNTTC	1 cut(s)	23
MspI	CCGG	1 cut(s)	67
MspR9I	CCNGG	1 cut(s)	67
MwoI	GCNNNNNNNGC	1 cut(s)	19
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	3 cut(s)	30, 58, 114
NlaIV	GGNNCC	2 cut(s)	116, 138
NmeAIII	GCCGAG	1 cut(s)	259
PceI	AGGCCT	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	97
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
PspN4I	GGNNCC	2 cut(s)	116, 138
PspPI	GGNCC	2 cut(s)	81, 136
PspPPI	RGGWCCY	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	275
PsuI	RGATCY	2 cut(s)	58, 114
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
Sau3AI	GATC	3 cut(s)	30, 58, 114
Sau96I	GGNCC	2 cut(s)	81, 136
ScrFI	CCNGG	1 cut(s)	67
SetI	ASST	3 cut(s)	138, 148, 183
SfaNI	GCATC	1 cut(s)	192
SinI	GGWCC	1 cut(s)	136
SmlI	CTYRAG	2 cut(s)	119, 131
SmoI	CTYRAG	2 cut(s)	119, 131
SseBI	AGGCCT	1 cut(s)	220
StuI	AGGCCT	1 cut(s)	220
StyD4I	CCNGG	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	289
TaqI	TCGA	1 cut(s)	6
TatI	WGTACW	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	136
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.