Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

81296736 .. 81298823

Gene Structure 2088 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG643000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGGTCCAAAGAAAGGTGGAAAGCTCCCAGTCGCAGCTTCTAAGAAGAAGCCGGAGAAGGTGGTGAACCCACTGTTCGAGAAGCGCCCGAAGCAGTTCGGGATCGGAGGGGCATTGCCTCCGAAGAGGGATCTGACCCGGTTCGTCAAATGGCCCAAGGCTGTGCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGCTCAAGGTCCCACCAGCTCTCAATCAGTTCACCAAGACCCTTGATAAGAACCTCGCTACAAGCCTGTTCAAGATGCTCCTGAAGTACAGGCCTGAAGACAAAGCCGAGAAGAAGGAGCGTCTTTTGAAAAGGGCGCAGGCAGAGACTGAAGGCAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATCGCTCATGATGTCGATCCAATTGAGTTGGTTGTATGGCTCCCTGCTTTATGCAGGAAGATGGAGATCCCCTACTGCATTGTGAAGGGCAAAGCACGTTTGGGAGCGGTATTTCTCCTTACATATACATACTGGTTTTTTGTTCTATCATGCCATGGCTACTTGAATAAACTTTTATCTTCTCTTCTGCCAGATTGTTCACCAGAAAACTGCCTCAGTTTTGTGCCTAACAACGGTCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

230

Amino Acids

26.18

Weight (kDa)

9.97

Isoelectric Point (pI)

37.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	116 - 187	2.5e-22	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	554
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	6 cut(s)	110, 138, 181, 194, 458, 508
AcuI	CTGAAG	3 cut(s)	302, 315, 369
AfaI	GTAC	2 cut(s)	287, 392
AfiI	CCNNNNNNNGG	3 cut(s)	14, 442, 680
AgsI	TTSAA	4 cut(s)	271, 328, 365, 613
AluBI	AGCT	4 cut(s)	25, 38, 218, 439
AluI	AGCT	4 cut(s)	25, 38, 218, 439
Alw26I	GTCTC	2 cut(s)	338, 401
AlwI	GGATC	6 cut(s)	110, 138, 181, 194, 458, 508
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	3 cut(s)	152, 290, 432
ApeKI	GCWGC	1 cut(s)	35
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	2 cut(s)	87, 337
AspS9I	GGNCC	4 cut(s)	5, 153, 208, 433
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	76, 223, 400, 639
AvaII	GGWCC	2 cut(s)	5, 208
BamHI	GGATCC	1 cut(s)	186
BbsI	GAAGAC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	1 cut(s)	502
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	338, 401
BfoI	RGCGCY	1 cut(s)	88
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	2 cut(s)	5, 208
BmgT120I	GGNCC	4 cut(s)	5, 153, 208, 433
BmiI	GGNNCC	4 cut(s)	6, 188, 210, 488
BmrFI	CCNGG	1 cut(s)	139
BmrI	ACTGGG	1 cut(s)	23
BmsI	GCATC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	303
BpuEI	CTTGAG	2 cut(s)	176, 188
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	2 cut(s)	462, 512
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	2 cut(s)	156, 601
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 442, 680
Bse1I	ACTGG	2 cut(s)	29, 584
Bse3DI	GCAATG	1 cut(s)	113
Bse8I	GATNNNNATC	2 cut(s)	462, 512
BseDI	CCNNGG	2 cut(s)	156, 601
BseJI	GATNNNNATC	2 cut(s)	462, 512
BseLI	CCNNNNNNNGG	3 cut(s)	14, 442, 680
BseMI	GCAATG	1 cut(s)	113
BseMII	CTCAG	1 cut(s)	676
BseNI	ACTGG	2 cut(s)	29, 584
BseXI	GCAGC	1 cut(s)	47
BseYI	CCCAGC	1 cut(s)	435
BsgI	GTGCAG	1 cut(s)	185
BshFI	GGCC	3 cut(s)	154, 292, 434
BsiSI	CCGG	2 cut(s)	53, 139
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	14, 442, 680
BsmAI	GTCTC	2 cut(s)	338, 401
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	3 cut(s)	154, 292, 434
Bso31I	GGTCTC	1 cut(s)	401
Bsp143I	GATC	5 cut(s)	102, 130, 186, 463, 513
Bsp19I	CCATGG	1 cut(s)	601
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	3 cut(s)	154, 292, 434
BspCNI	CTCAG	1 cut(s)	675
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	4 cut(s)	6, 188, 210, 488
BspPI	GGATC	6 cut(s)	110, 138, 181, 194, 458, 508
BspTNI	GGTCTC	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	29, 584
BssECI	CCNNGG	2 cut(s)	156, 601
BssMI	GATC	5 cut(s)	102, 130, 186, 463, 513
BssT1I	CCWWGG	2 cut(s)	156, 601
Bst4CI	ACNGT	4 cut(s)	75, 361, 395, 683
Bst6I	CTCTTC	3 cut(s)	119, 176, 636
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	42, 662
BstDSI	CCRYGG	1 cut(s)	601
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	87, 337
BstKTI	GATC	5 cut(s)	105, 133, 189, 466, 516
BstMAI	GTCTC	2 cut(s)	338, 401
BstMBI	GATC	5 cut(s)	102, 130, 186, 463, 513
BstMWI	GCNNNNNNNGC	1 cut(s)	91
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	47
BstV2I	GAAGAC	1 cut(s)	303
BstX2I	RGATCY	3 cut(s)	130, 186, 513
BstYI	RGATCY	3 cut(s)	130, 186, 513
BsuRI	GGCC	3 cut(s)	154, 292, 434
BtgI	CCRYGG	1 cut(s)	601
BtsIMutI	CAGTG	1 cut(s)	71
Cac8I	GCNNGC	1 cut(s)	339
CaiI	CAGNNNCTG	1 cut(s)	347
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	2 cut(s)	87, 337
Cfr13I	GGNCC	4 cut(s)	5, 153, 208, 433
CseI	GACGC	1 cut(s)	308
Csp6I	GTAC	2 cut(s)	286, 391
CviAII	CATG	4 cut(s)	404, 455, 597, 602
CviQI	GTAC	2 cut(s)	286, 391
DdeI	CTNAG	2 cut(s)	42, 662
DpnI	GATC	5 cut(s)	104, 132, 188, 465, 515
DpnII	GATC	5 cut(s)	102, 130, 186, 463, 513
Eam1104I	CTCTTC	3 cut(s)	119, 176, 636
EarI	CTCTTC	3 cut(s)	119, 176, 636
Eco130I	CCWWGG	2 cut(s)	156, 601
Eco147I	AGGCCT	1 cut(s)	292
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	5, 208
Eco57I	CTGAAG	3 cut(s)	302, 315, 369
EcoO109I	RGGNCCY	1 cut(s)	208
EcoT14I	CCWWGG	2 cut(s)	156, 601
ErhI	CCWWGG	2 cut(s)	156, 601
FaeI	CATG	4 cut(s)	407, 458, 600, 605
FaiI	YATR	9 cut(s)	405, 456, 484, 499, 571, 573, 577, 598, 603
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	403, 454, 596, 601
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GlaI	GCGC	2 cut(s)	86, 336
GluI	GCNGC	1 cut(s)	36
GsaI	CCCAGC	1 cut(s)	439
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	3 cut(s)	154, 292, 434
HapII	CCGG	2 cut(s)	53, 139
HgaI	GACGC	1 cut(s)	308
HhaI	GCGC	2 cut(s)	87, 337
Hin1II	CATG	4 cut(s)	407, 458, 600, 605
Hin6I	GCGC	2 cut(s)	85, 335
HinP1I	GCGC	2 cut(s)	85, 335
HinfI	GANTC	1 cut(s)	169
HpaII	CCGG	2 cut(s)	53, 139
HphI	GGTGA	4 cut(s)	76, 223, 400, 639
Hpy166II	GTNNAC	3 cut(s)	67, 231, 647
Hpy188I	TCNGA	4 cut(s)	107, 123, 135, 174
Hpy188III	TCNNGA	6 cut(s)	79, 100, 271, 280, 455, 686
Hpy8I	GTNNAC	3 cut(s)	67, 231, 647
HpyAV	CCTTC	4 cut(s)	52, 307, 344, 526
HpyCH4III	ACNGT	4 cut(s)	75, 361, 395, 683
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	3 cut(s)	166, 501, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	91
HpyF3I	CTNAG	2 cut(s)	42, 662
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	4 cut(s)	407, 458, 600, 605
HspAI	GCGC	2 cut(s)	85, 335
Kzo9I	GATC	5 cut(s)	102, 130, 186, 463, 513
LmnI	GCTCC	5 cut(s)	30, 282, 316, 492, 551
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	1 cut(s)	264
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	5 cut(s)	104, 132, 188, 465, 515
MbiI	CCGCTC	1 cut(s)	554
MboI	GATC	5 cut(s)	102, 130, 186, 463, 513
MboII	GAAGA	9 cut(s)	58, 136, 190, 193, 308, 322, 517, 618, 623
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	3 cut(s)	130, 186, 513
MluCI	AATT	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	95
MspI	CCGG	2 cut(s)	53, 139
MspR9I	CCNGG	1 cut(s)	139
MunI	CAATTG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	91
NciI	CCSGG	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	601
NdeII	GATC	5 cut(s)	102, 130, 186, 463, 513
NlaIII	CATG	4 cut(s)	407, 458, 600, 605
NlaIV	GGNNCC	4 cut(s)	6, 188, 210, 488
NmeAIII	GCCGAG	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	406
PagI	TCATGA	1 cut(s)	454
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	169
PflMI	CCANNNNNTGG	1 cut(s)	442
PkrI	GCNGC	1 cut(s)	37
PpuMI	RGGWCCY	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	435
PspN4I	GGNNCC	4 cut(s)	6, 188, 210, 488
PspPI	GGNCC	4 cut(s)	5, 153, 208, 433
PspPPI	RGGWCCY	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	3 cut(s)	130, 186, 513
RsaI	GTAC	2 cut(s)	287, 392
RsaNI	GTAC	2 cut(s)	286, 391
SatI	GCNGC	1 cut(s)	36
Sau3AI	GATC	5 cut(s)	102, 130, 186, 463, 513
Sau96I	GGNCC	4 cut(s)	5, 153, 208, 433
ScrFI	CCNGG	1 cut(s)	139
SfaNI	GCATC	1 cut(s)	264
SinI	GGWCC	2 cut(s)	5, 208
SmlI	CTYRAG	2 cut(s)	191, 203
SmoI	CTYRAG	2 cut(s)	191, 203
Sse9I	AATT	1 cut(s)	468
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	1 cut(s)	554
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	156, 601
TaaI	ACNGT	4 cut(s)	75, 361, 395, 683
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	2 cut(s)	78, 462
TasI	AATT	1 cut(s)	468
TatI	WGTACW	1 cut(s)	285
TfiI	GAWTC	1 cut(s)	169
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	406
TspRI	CASTG	1 cut(s)	78
Van91I	CCANNNNNTGG	1 cut(s)	442
VpaK11BI	GGWCC	2 cut(s)	5, 208
XmnI	GAANNNNTTC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.