Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

26849977 .. 26853194

Gene Structure 3218 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGATAGAGGAGGTCAAGAAGGCTTACAAGGAGGATTTGAAGCTTCATCTAAGAATGACAACCAGTCCCCCAAGGCCACGGGAATGGTATCAAGAAGCCCTAGAGGCATCGCCACACTTTCACCAACGGGTCCCATGGAATCAAATGAGAACACACAGAACCTTCAACTGCCACGGAGATGCAAATATGGAAGTTACGATCATCCATAGTATAGCACGCATACATATCAATCATACTGTCATATTGAGATGCTTTATAGATAAGGGGTCTGGGGGACTTTATCCTCTGTCGAGGTATGGAAGTGAAGTTCAACGGAACAAGAGAACTAAATATGATACAGCAAACTATACGGATAACGATTGTGCTTTAAAAGGGCTCGGGCAGACCGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCCCGGCTTGTGGTTATCGCTCATGATGTCGATCCAGTTGAGTTGGTTGTATGGCTCCTGCTTTATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

180

Amino Acids

20.89

Weight (kDa)

8.91

Isoelectric Point (pI)

38.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	130 - 176	2e-09	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	497
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	481
AgsI	TTSAA	4 cut(s)	40, 166, 311, 404
AhdI	GACNNNNNGTC	1 cut(s)	63
AloI	GAACNNNNNNTCC	2 cut(s)	291, 323
AluBI	AGCT	1 cut(s)	43
AluI	AGCT	1 cut(s)	43
Alw26I	GTCTC	1 cut(s)	440
AlwI	GGATC	1 cut(s)	497
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	2 cut(s)	74, 471
AspS9I	GGNCC	2 cut(s)	130, 472
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	113, 439
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	1 cut(s)	130
BanII	GRGCYC	1 cut(s)	378
BcnI	CCSGG	1 cut(s)	475
BcoDI	GTCTC	1 cut(s)	440
BfaI	CTAG	1 cut(s)	101
BglI	GCCNNNNNGGC	1 cut(s)	104
Bme1390I	CCNGG	1 cut(s)	475
Bme18I	GGWCC	1 cut(s)	130
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	2 cut(s)	130, 472
BmiI	GGNNCC	3 cut(s)	131, 132, 527
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	3 cut(s)	116, 169, 239
BpuMI	CCSGG	1 cut(s)	475
BsaBI	GATNNNNATC	1 cut(s)	501
BsaI	GGTCTC	1 cut(s)	440
BsaJI	CCNNGG	4 cut(s)	71, 77, 134, 172
Bsc4I	CCNNNNNNNGG	1 cut(s)	481
Bse1I	ACTGG	2 cut(s)	63, 506
Bse8I	GATNNNNATC	1 cut(s)	501
BseDI	CCNNGG	4 cut(s)	71, 77, 134, 172
BseGI	GGATG	1 cut(s)	201
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	481
BseNI	ACTGG	2 cut(s)	63, 506
BseRI	GAGGAG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	76, 473
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	1 cut(s)	475
BslFI	GGGAC	3 cut(s)	51, 116, 288
BslI	CCNNNNNNNGG	1 cut(s)	481
BsmAI	GTCTC	1 cut(s)	440
BsmFI	GGGAC	3 cut(s)	51, 116, 288
BsnI	GGCC	2 cut(s)	76, 473
Bso31I	GGTCTC	1 cut(s)	440
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	1 cut(s)	378
Bsp143I	GATC	2 cut(s)	198, 502
Bsp19I	CCATGG	1 cut(s)	134
BspANI	GGCC	2 cut(s)	76, 473
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	3 cut(s)	131, 132, 527
BspPI	GGATC	1 cut(s)	497
BspTNI	GGTCTC	1 cut(s)	440
BsrI	ACTGG	2 cut(s)	63, 506
BssECI	CCNNGG	4 cut(s)	71, 77, 134, 172
BssMI	GATC	2 cut(s)	198, 502
BssT1I	CCWWGG	2 cut(s)	71, 134
Bst4CI	ACNGT	3 cut(s)	238, 400, 434
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	50
BstDSI	CCRYGG	3 cut(s)	77, 134, 172
BstF5I	GGATG	1 cut(s)	201
BstKTI	GATC	2 cut(s)	201, 505
BstMAI	GTCTC	1 cut(s)	440
BstMBI	GATC	2 cut(s)	198, 502
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	473
BstXI	CCANNNNNNTGG	1 cut(s)	84
BsuRI	GGCC	2 cut(s)	76, 473
BtgI	CCRYGG	3 cut(s)	77, 134, 172
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	217
CciI	TCATGA	1 cut(s)	493
Cfr13I	GGNCC	2 cut(s)	130, 472
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	3 cut(s)	135, 443, 494
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	2 cut(s)	200, 504
DpnII	GATC	2 cut(s)	198, 502
DraI	TTTAAA	1 cut(s)	369
DriI	GACNNNNNGTC	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	71, 134
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	440
Eco47I	GGWCC	1 cut(s)	130
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	130
EcoT14I	CCWWGG	2 cut(s)	71, 134
EcoT38I	GRGCYC	1 cut(s)	378
ErhI	CCWWGG	2 cut(s)	71, 134
FaeI	CATG	3 cut(s)	138, 446, 497
FaqI	GGGAC	3 cut(s)	51, 116, 288
FatI	CATG	3 cut(s)	134, 442, 493
FokI	GGATG	1 cut(s)	188
FriOI	GRGCYC	1 cut(s)	378
FspBI	CTAG	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	76, 473
HapII	CCGG	1 cut(s)	475
Hin1II	CATG	3 cut(s)	138, 446, 497
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	1 cut(s)	475
HphI	GGTGA	2 cut(s)	113, 439
Hpy188III	TCNNGA	3 cut(s)	16, 92, 494
HpyAV	CCTTC	3 cut(s)	13, 172, 383
HpyCH4III	ACNGT	3 cut(s)	238, 400, 434
HpyCH4V	TGCA	1 cut(s)	182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	50
Hsp92II	CATG	3 cut(s)	138, 446, 497
KflI	GGGWCCC	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	198, 502
LmnI	GCTCC	1 cut(s)	531
LpnPI	CCDG	4 cut(s)	76, 255, 488, 519
LweI	GCATC	3 cut(s)	116, 169, 239
MaeI	CTAG	1 cut(s)	101
MaeIII	GTNAC	2 cut(s)	193, 445
MalI	GATC	2 cut(s)	200, 504
MboI	GATC	2 cut(s)	198, 502
MhlI	GDGCHC	1 cut(s)	378
MnlI	CCTC	6 cut(s)	4, 25, 97, 285, 294, 464
MseI	TTAA	1 cut(s)	368
MslI	CAYNNNNRTG	2 cut(s)	82, 177
MspI	CCGG	1 cut(s)	475
MspR9I	CCNGG	1 cut(s)	475
MwoI	GCNNNNNNNGC	1 cut(s)	104
NciI	CCSGG	1 cut(s)	475
NcoI	CCATGG	1 cut(s)	134
NdeII	GATC	2 cut(s)	198, 502
NlaIII	CATG	3 cut(s)	138, 446, 497
NlaIV	GGNNCC	3 cut(s)	131, 132, 527
NmuCI	GTSAC	1 cut(s)	445
PagI	TCATGA	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	139
PpuMI	RGGWCCY	1 cut(s)	130
Psp5II	RGGWCCY	1 cut(s)	130
PspN4I	GGNNCC	3 cut(s)	131, 132, 527
PspPI	GGNCC	2 cut(s)	130, 472
PspPPI	RGGWCCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	2 cut(s)	82, 177
SaqAI	TTAA	1 cut(s)	368
Sau3AI	GATC	2 cut(s)	198, 502
Sau96I	GGNCC	2 cut(s)	130, 472
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	1 cut(s)	378
SetI	ASST	6 cut(s)	15, 45, 164, 296, 452, 456
SfaNI	GCATC	3 cut(s)	116, 169, 239
SinI	GGWCC	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	82, 177
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	2 cut(s)	71, 134
TaaI	ACNGT	3 cut(s)	238, 400, 434
TaqI	TCGA	2 cut(s)	290, 501
TaqII	GACCGA	1 cut(s)	401
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	368
Tru9I	TTAA	1 cut(s)	368
TseFI	GTSAC	1 cut(s)	445
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	3 cut(s)	189, 328, 365
VpaK11BI	GGWCC	1 cut(s)	130
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.