Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003179.1

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

242520 .. 244975

Gene Structure 2456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003179.1_g000052.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgcaaatcagagcaaaccaccaccgaagggaggacgacaaggatgagacaagtcgatctgggttagtgccgtcgtcggagaatgcaggaaaagtcaggtcgggcgtgtttagcaaatccgaaggcccagcccatacaaagacccagtttattcatatatacgcccgagggttttcatttagggtttccagagcaaaccgaagcagctgcgcaaaaatgggtccaaagaaaggtggaaaagctccagttgcttcttctaagaagaagccggagaaggtggtgaacccacttttcgagaagcggccgaagcagtttgggatcggaggggcgttgccacccaagagggatctgacccgcttcgttaaatggcccaaggctgttcagattcagaggaagaaaaggatcctcaagcagaggttgaaggttcctccagctctgaaccagttcaccaagaccctcgacaaaaacctcggtatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

159

Amino Acids

17.85

Weight (kDa)

11.25

Isoelectric Point (pI)

54.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	211
AciI	CCGC	2 cut(s)	301, 355
AclWI	GGATC	4 cut(s)	326, 354, 397, 410
AcoI	YGGCCR	1 cut(s)	302
AfiI	CCNNNNNNNGG	3 cut(s)	28, 31, 230
AgsI	TTSAA	1 cut(s)	421
AluBI	AGCT	3 cut(s)	207, 242, 434
AluI	AGCT	3 cut(s)	207, 242, 434
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	4 cut(s)	326, 354, 397, 410
Ama87I	CYCGRG	1 cut(s)	165
AoxI	GGCC	3 cut(s)	124, 302, 368
ApeKI	GCWGC	2 cut(s)	204, 207
Asp700I	GAANNNNTTC	1 cut(s)	443
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	3 cut(s)	125, 221, 369
AsuHPI	GGTGA	2 cut(s)	292, 439
AvaI	CYCGRG	1 cut(s)	165
AvaII	GGWCC	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	402
BbvI	GCAGC	2 cut(s)	194, 216
BceAI	ACGGC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BcoDI	GTCTC	1 cut(s)	41
BisI	GCNGC	3 cut(s)	205, 208, 302
BlsI	GCNGC	3 cut(s)	206, 209, 303
Bme18I	GGWCC	1 cut(s)	221
BmeT110I	CYCGRG	1 cut(s)	165
BmgT120I	GGNCC	3 cut(s)	125, 221, 369
BmiI	GGNNCC	3 cut(s)	222, 404, 426
BmrI	ACTGGG	1 cut(s)	139
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	2 cut(s)	228, 414
BpuEI	CTTGAG	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	166, 372, 469
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 31, 230
Bse1I	ACTGG	3 cut(s)	145, 245, 442
BseDI	CCNNGG	3 cut(s)	166, 372, 469
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	3 cut(s)	28, 31, 230
BseNI	ACTGG	3 cut(s)	145, 245, 442
BseX3I	CGGCCG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	194, 216
BseYI	CCCAGC	1 cut(s)	127
Bsh1285I	CGRYCG	1 cut(s)	305
BshFI	GGCC	3 cut(s)	126, 304, 370
BsiEI	CGRYCG	1 cut(s)	305
BsiHKCI	CYCGRG	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	28, 31, 230
BsmAI	GTCTC	1 cut(s)	41
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	3 cut(s)	126, 304, 370
BsoBI	CYCGRG	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	56, 318, 346, 402
BspACI	CCGC	2 cut(s)	301, 355
BspANI	GGCC	3 cut(s)	126, 304, 370
BspLI	GGNNCC	3 cut(s)	222, 404, 426
BspPI	GGATC	4 cut(s)	326, 354, 397, 410
BsrI	ACTGG	3 cut(s)	145, 245, 442
BssECI	CCNNGG	3 cut(s)	166, 372, 469
BssMI	GATC	4 cut(s)	56, 318, 346, 402
BssT1I	CCWWGG	1 cut(s)	372
BstDEI	CTNAG	1 cut(s)	258
BstF5I	GGATG	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	4 cut(s)	59, 321, 349, 405
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	4 cut(s)	56, 318, 346, 402
BstMCI	CGRYCG	1 cut(s)	305
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 248, 307
BstV1I	GCAGC	2 cut(s)	194, 216
BstX2I	RGATCY	2 cut(s)	346, 402
BstYI	RGATCY	2 cut(s)	346, 402
BstZI	CGGCCG	1 cut(s)	302
BsuRI	GGCC	3 cut(s)	126, 304, 370
BtsCI	GGATG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	212
Cfr13I	GGNCC	3 cut(s)	125, 221, 369
CviJI	RGCY	9 cut(s)	126, 131, 207, 242, 268, 304, 370, 377, 434
CviKI_1	RGCY	9 cut(s)	126, 131, 207, 242, 268, 304, 370, 377, 434
DdeI	CTNAG	1 cut(s)	258
DpnI	GATC	4 cut(s)	58, 320, 348, 404
DpnII	GATC	4 cut(s)	56, 318, 346, 402
EaeI	YGGCCR	1 cut(s)	302
EagI	CGGCCG	1 cut(s)	302
EclXI	CGGCCG	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	221
Eco52I	CGGCCG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	372
ErhI	CCWWGG	1 cut(s)	372
FaiI	YATR	4 cut(s)	135, 156, 158, 160
FauI	CCCGC	1 cut(s)	362
Fnu4HI	GCNGC	3 cut(s)	205, 208, 302
FokI	GGATG	1 cut(s)	56
Fsp4HI	GCNGC	3 cut(s)	205, 208, 302
FspI	TGCGCA	1 cut(s)	211
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	3 cut(s)	205, 208, 302
GsaI	CCCAGC	1 cut(s)	131
GsuI	CTGGAG	2 cut(s)	228, 414
HaeIII	GGCC	3 cut(s)	126, 304, 370
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	212
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	1 cut(s)	385
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	2 cut(s)	292, 439
Hpy166II	GTNNAC	2 cut(s)	283, 447
Hpy188I	TCNGA	8 cut(s)	11, 79, 121, 323, 351, 384, 390, 438
Hpy188III	TCNNGA	2 cut(s)	189, 295
Hpy8I	GTNNAC	2 cut(s)	283, 447
Hpy99I	CGWCG	2 cut(s)	76, 79
HpyAV	CCTTC	4 cut(s)	21, 116, 268, 415
HpyCH4V	TGCA	2 cut(s)	4, 86
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 248, 307
HpyF3I	CTNAG	1 cut(s)	258
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	4 cut(s)	56, 318, 346, 402
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	2 cut(s)	194, 216
MalI	GATC	4 cut(s)	58, 320, 348, 404
MboI	GATC	4 cut(s)	56, 318, 346, 402
MboII	GAAGA	3 cut(s)	246, 274, 406
MflI	RGATCY	2 cut(s)	346, 402
MmeI	TCCRAC	1 cut(s)	57
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	207
MspI	CCGG	1 cut(s)	269
Mva1269I	GAATGC	1 cut(s)	88
MwoI	GCNNNNNNNGC	3 cut(s)	111, 248, 307
NdeII	GATC	4 cut(s)	56, 318, 346, 402
NlaIV	GGNNCC	3 cut(s)	222, 404, 426
NsbI	TGCGCA	1 cut(s)	211
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	3 cut(s)	206, 209, 303
PspFI	CCCAGC	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	222, 404, 426
PspPI	GGNCC	3 cut(s)	125, 221, 369
PsuI	RGATCY	2 cut(s)	346, 402
PvuII	CAGCTG	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	205, 208, 302
Sau3AI	GATC	4 cut(s)	56, 318, 346, 402
Sau96I	GGNCC	3 cut(s)	125, 221, 369
SetI	ASST	9 cut(s)	101, 209, 235, 244, 279, 419, 426, 436, 471
SinI	GGWCC	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
SsiI	CCGC	2 cut(s)	301, 355
StyI	CCWWGG	1 cut(s)	372
TaqI	TCGA	3 cut(s)	55, 294, 459
TauI	GCSGC	1 cut(s)	304
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TseI	GCWGC	2 cut(s)	204, 207
TspDTI	ATGAA	2 cut(s)	143, 165
VpaK11BI	GGWCC	1 cut(s)	221
XmnI	GAANNNNTTC	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.