Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

730505 .. 732124

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1011700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGTGAGGATTTGCTCCCTCTCCGTCATCCTCCGCCTCCCATTCCATCTCGGTCGCGCCCCCAAAAGAGGCGTAAAAGCTCCAGTTGCAGCTTCCAAGAAGAAGACGGACAAGGTTGTGAACCCGCTGTTTGAGAAGCGCCCGAAGCAGTTCGGTATCGGTGGGGCATTGCCACCGAAGAGGGATCTGACCCGGTTCGTGAAATGGCCCAAGGTGGTTCAGATTCAGAGGAAGAAGAGGATCCTCAAGCAGAGGTTGAAGGTTCCTCCAGCTTTGAACCAGTTCACCAAGACCCTCGATAAGAACCTCGCCACCAGCCTGTTCAAGATGCTTCTCAAGTACAGGCCAGAGGACAAAGCTGCAAAGAAGGAGCGCCTTTTGAAAAGGGCCCAGGCCGAGACCGAAGGGAAAACTGTTGAGGCCAAGAAGCCTATTGTTGTGAAGTATGGTCTCAACCACGTGACTTACCTGATTGAGCAGAACAAGGCCCAGCTTGTTGTTATTGCGCACGATGTTGACCCAATAGAGTTGGTTGTCTGGCTTCCTGCATTATGTAGGAAGATGGAAGTCCCATATTGCATTGTGAAGGGCAAAGCACGCTTGGGATCGATTGTCCACAAGAAAACTGCATCAGTTTTGTGCTTGACAACAGTCAAGAACGAGGATAAGTTGGAGTTCAGCAAGGTCTTGGAGGCAATCAAGGCCAACTTCAATGACAAGTACGAAGAGTACAGGAAAAAGTGGGGAGGGGGCATCATGGGTTCCAAATCCCAGGCAAAAACTAGGGCGAAGGAGAAGCTCCTTGCGAAGGAAGCTGCTCAAAGGCTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

278

Amino Acids

31.45

Weight (kDa)

10.3

Isoelectric Point (pI)

30.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	134 - 224	3.6e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	507
AccII	CGCG	1 cut(s)	57
AciI	CCGC	2 cut(s)	34, 125
AclWI	GGATC	4 cut(s)	192, 235, 248, 613
AcvI	CACGTG	1 cut(s)	460
AfaI	GTAC	3 cut(s)	341, 722, 731
AfiI	CCNNNNNNNGG	2 cut(s)	68, 808
AgsI	TTSAA	5 cut(s)	259, 277, 325, 382, 712
AjnI	CCWGG	2 cut(s)	390, 771
AluBI	AGCT	7 cut(s)	80, 92, 272, 359, 493, 799, 815
AluI	AGCT	7 cut(s)	80, 92, 272, 359, 493, 799, 815
Alw26I	GTCTC	2 cut(s)	392, 455
AlwI	GGATC	4 cut(s)	192, 235, 248, 613
AoxI	GGCC	7 cut(s)	206, 344, 387, 393, 420, 486, 702
ApaI	GGGCCC	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	89, 359, 815
Asp700I	GAANNNNTTC	2 cut(s)	149, 281
AspLEI	GCGC	4 cut(s)	59, 141, 375, 508
AspS9I	GGNCC	4 cut(s)	207, 387, 388, 487
AsuC2I	CCSGG	1 cut(s)	193
AsuHPI	GGTGA	2 cut(s)	16, 277
BaeGI	GKGCMC	1 cut(s)	391
BamHI	GGATCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	391
BbrPI	CACGTG	1 cut(s)	460
BbsI	GAAGAC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	101, 346, 802
BccI	CCATC	2 cut(s)	54, 556
BciT130I	CCWGG	2 cut(s)	392, 773
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	392, 455
BfaI	CTAG	1 cut(s)	783
BfoI	RGCGCY	2 cut(s)	142, 376
BisI	GCNGC	3 cut(s)	90, 360, 816
BlsI	GCNGC	3 cut(s)	91, 361, 817
Bme1390I	CCNGG	3 cut(s)	193, 392, 773
BmgT120I	GGNCC	4 cut(s)	207, 387, 388, 487
BmiI	GGNNCC	4 cut(s)	242, 264, 389, 763
BmrFI	CCNGG	3 cut(s)	193, 392, 773
BmsI	GCATC	3 cut(s)	318, 638, 762
BoxI	GACNNNNGTC	1 cut(s)	650
BpiI	GAAGAC	1 cut(s)	110
BpmI	CTGGAG	2 cut(s)	66, 252
BpuEI	CTTGAG	2 cut(s)	230, 320
BpuMI	CCSGG	1 cut(s)	193
Bsa29I	ATCGAT	1 cut(s)	608
BsaAI	YACGTR	1 cut(s)	460
BsaI	GGTCTC	2 cut(s)	392, 455
BsaJI	CCNNGG	3 cut(s)	210, 390, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 808
Bse1I	ACTGG	2 cut(s)	83, 280
Bse3DI	GCAATG	1 cut(s)	167
BseBI	CCWGG	2 cut(s)	392, 773
BseCI	ATCGAT	1 cut(s)	608
BseDI	CCNNGG	3 cut(s)	210, 390, 771
BseGI	GGATG	1 cut(s)	27
BseLI	CCNNNNNNNGG	2 cut(s)	68, 808
BseMI	GCAATG	1 cut(s)	167
BseNI	ACTGG	2 cut(s)	83, 280
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	3 cut(s)	101, 346, 802
BseYI	CCCAGC	1 cut(s)	489
Bsh1236I	CGCG	1 cut(s)	57
Bsh1285I	CGRYCG	1 cut(s)	55
BshFI	GGCC	7 cut(s)	208, 346, 389, 395, 422, 488, 704
BshVI	ATCGAT	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	193
BslFI	GGGAC	1 cut(s)	554
BslI	CCNNNNNNNGG	2 cut(s)	68, 808
BsmAI	GTCTC	2 cut(s)	392, 455
BsmFI	GGGAC	1 cut(s)	554
BsnI	GGCC	7 cut(s)	208, 346, 389, 395, 422, 488, 704
Bso31I	GGTCTC	2 cut(s)	392, 455
Bsp120I	GGGCCC	1 cut(s)	387
Bsp1286I	GDGCHC	1 cut(s)	391
Bsp143I	GATC	3 cut(s)	184, 240, 605
BspACI	CCGC	2 cut(s)	34, 125
BspANI	GGCC	7 cut(s)	208, 346, 389, 395, 422, 488, 704
BspDI	ATCGAT	1 cut(s)	608
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	4 cut(s)	242, 264, 389, 763
BspPI	GGATC	4 cut(s)	192, 235, 248, 613
BspTNI	GGTCTC	2 cut(s)	392, 455
BsrDI	GCAATG	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	83, 280
BssECI	CCNNGG	3 cut(s)	210, 390, 771
BssMI	GATC	3 cut(s)	184, 240, 605
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	2 cut(s)	392, 773
Bst4CI	ACNGT	2 cut(s)	415, 652
Bst6I	CTCTTC	3 cut(s)	173, 230, 720
BstBAI	YACGTR	1 cut(s)	460
BstC8I	GCNNGC	1 cut(s)	598
BstENI	CCTNNNNNAGG	1 cut(s)	806
BstF5I	GGATG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	2 cut(s)	142, 376
BstHHI	GCGC	4 cut(s)	59, 141, 375, 508
BstKTI	GATC	3 cut(s)	187, 243, 608
BstMAI	GTCTC	2 cut(s)	392, 455
BstMBI	GATC	3 cut(s)	184, 240, 605
BstMCI	CGRYCG	1 cut(s)	55
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 145, 597, 701, 812
BstNI	CCWGG	2 cut(s)	392, 773
BstPAI	GACNNNNGTC	1 cut(s)	650
BstSCI	CCNGG	3 cut(s)	191, 390, 771
BstSLI	GKGCMC	1 cut(s)	391
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	3 cut(s)	101, 346, 802
BstV2I	GAAGAC	1 cut(s)	110
BstX2I	RGATCY	2 cut(s)	184, 240
BstYI	RGATCY	2 cut(s)	184, 240
Bsu15I	ATCGAT	1 cut(s)	608
BsuRI	GGCC	7 cut(s)	208, 346, 389, 395, 422, 488, 704
BsuTUI	ATCGAT	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	27
Cac8I	GCNNGC	1 cut(s)	598
CfoI	GCGC	4 cut(s)	59, 141, 375, 508
Cfr13I	GGNCC	4 cut(s)	207, 387, 388, 487
ClaI	ATCGAT	1 cut(s)	608
Csp6I	GTAC	3 cut(s)	340, 721, 730
CviAII	CATG	1 cut(s)	757
CviQI	GTAC	3 cut(s)	340, 721, 730
DpnI	GATC	3 cut(s)	186, 242, 607
DpnII	GATC	3 cut(s)	184, 240, 605
Eam1104I	CTCTTC	3 cut(s)	173, 230, 720
EarI	CTCTTC	3 cut(s)	173, 230, 720
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	391
Eco31I	GGTCTC	2 cut(s)	392, 455
Eco72I	CACGTG	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	387
EcoRII	CCWGG	2 cut(s)	390, 771
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	1 cut(s)	760
FaiI	YATR	4 cut(s)	447, 553, 574, 758
FalI	AAGNNNNNCTT	2 cut(s)	692, 724
FaqI	GGGAC	1 cut(s)	554
FatI	CATG	1 cut(s)	756
FauI	CCCGC	1 cut(s)	132
Fnu4HI	GCNGC	3 cut(s)	90, 360, 816
FokI	GGATG	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	90, 360, 816
FspBI	CTAG	1 cut(s)	783
FspI	TGCGCA	1 cut(s)	507
GlaI	GCGC	4 cut(s)	58, 140, 374, 507
GluI	GCNGC	3 cut(s)	90, 360, 816
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	2 cut(s)	66, 252
HaeII	RGCGCY	2 cut(s)	142, 376
HaeIII	GGCC	7 cut(s)	208, 346, 389, 395, 422, 488, 704
HapII	CCGG	1 cut(s)	193
HhaI	GCGC	4 cut(s)	59, 141, 375, 508
Hin1II	CATG	1 cut(s)	760
Hin6I	GCGC	4 cut(s)	57, 139, 373, 506
HinP1I	GCGC	4 cut(s)	57, 139, 373, 506
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	1 cut(s)	193
HphI	GGTGA	2 cut(s)	16, 277
Hpy166II	GTNNAC	4 cut(s)	121, 285, 517, 616
Hpy188I	TCNGA	3 cut(s)	189, 222, 228
Hpy188III	TCNNGA	3 cut(s)	199, 325, 655
Hpy8I	GTNNAC	4 cut(s)	121, 285, 517, 616
HpyAV	CCTTC	6 cut(s)	253, 361, 398, 580, 784, 802
HpyCH4III	ACNGT	2 cut(s)	415, 652
HpyCH4IV	ACGT	1 cut(s)	459
HpyCH4V	TGCA	5 cut(s)	89, 362, 548, 579, 629
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 145, 597, 701, 812
HpySE526I	ACGT	1 cut(s)	459
Hsp92II	CATG	1 cut(s)	760
HspAI	GCGC	4 cut(s)	57, 139, 373, 506
Kzo9I	GATC	3 cut(s)	184, 240, 605
LmnI	GCTCC	4 cut(s)	20, 85, 370, 804
Lsp1109I	GCAGC	3 cut(s)	101, 346, 802
LweI	GCATC	3 cut(s)	318, 638, 762
MaeI	CTAG	1 cut(s)	783
MaeII	ACGT	1 cut(s)	459
MaeIII	GTNAC	1 cut(s)	460
MalI	GATC	3 cut(s)	186, 242, 607
MboI	GATC	3 cut(s)	184, 240, 605
MboII	GAAGA	7 cut(s)	112, 115, 190, 244, 247, 571, 737
MflI	RGATCY	2 cut(s)	184, 240
MhlI	GDGCHC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	651
MroXI	GAANNNNTTC	2 cut(s)	149, 281
MspA1I	CMGCKG	1 cut(s)	127
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	3 cut(s)	193, 392, 773
MvaI	CCWGG	2 cut(s)	392, 773
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	5 cut(s)	86, 145, 597, 701, 812
NciI	CCSGG	1 cut(s)	193
NdeII	GATC	3 cut(s)	184, 240, 605
NlaIII	CATG	1 cut(s)	760
NlaIV	GGNNCC	4 cut(s)	242, 264, 389, 763
NmeAIII	GCCGAG	1 cut(s)	421
NmuCI	GTSAC	1 cut(s)	460
NsbI	TGCGCA	1 cut(s)	507
PdmI	GAANNNNTTC	2 cut(s)	149, 281
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	3 cut(s)	91, 361, 817
PmaCI	CACGTG	1 cut(s)	460
PmlI	CACGTG	1 cut(s)	460
Ppu21I	YACGTR	1 cut(s)	460
PshAI	GACNNNNGTC	1 cut(s)	650
Psp6I	CCWGG	2 cut(s)	390, 771
PspCI	CACGTG	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	489
PspGI	CCWGG	2 cut(s)	390, 771
PspN4I	GGNNCC	4 cut(s)	242, 264, 389, 763
PspOMI	GGGCCC	1 cut(s)	387
PspPI	GGNCC	4 cut(s)	207, 387, 388, 487
PsuI	RGATCY	2 cut(s)	184, 240
RsaI	GTAC	3 cut(s)	341, 722, 731
RsaNI	GTAC	3 cut(s)	340, 721, 730
SatI	GCNGC	3 cut(s)	90, 360, 816
Sau3AI	GATC	3 cut(s)	184, 240, 605
Sau96I	GGNCC	4 cut(s)	207, 387, 388, 487
ScrFI	CCNGG	3 cut(s)	193, 392, 773
SduI	GDGCHC	1 cut(s)	391
SfaNI	GCATC	3 cut(s)	318, 638, 762
SmlI	CTYRAG	2 cut(s)	245, 335
SmoI	CTYRAG	2 cut(s)	245, 335
SsiI	CCGC	2 cut(s)	34, 125
SspMI	CTAG	1 cut(s)	783
StyD4I	CCNGG	3 cut(s)	191, 390, 771
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	415, 652
TaiI	ACGT	1 cut(s)	462
TaqI	TCGA	2 cut(s)	297, 608
TaqII	GACCGA	2 cut(s)	41, 416
TatI	WGTACW	2 cut(s)	339, 729
TfiI	GAWTC	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	460
TseI	GCWGC	3 cut(s)	89, 359, 815
Tsp45I	GTSAC	1 cut(s)	460
TspGWI	ACGGA	2 cut(s)	13, 122
XagI	CCTNNNNNAGG	1 cut(s)	806
XmnI	GAANNNNTTC	2 cut(s)	149, 281
XspI	CTAG	1 cut(s)	783

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.