Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

81946400 .. 81949654

Gene Structure 3255 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG577800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGATAGAGGAGGTCAAGAAGGCTTACGAGGAGGCTTTGAAGCTTCATCTAAGAATGACAACCAGTCCCCCAAGGCCACAGGAATGGTATCGAGAAGCCCTAGAGGCACCGCCACACTTTCACCAACAGGTGGCTTCATATTTGTTCTTGTTGAGATTAGCAGAAAGGGATCAAAGTCTAATGTACCAACTAAGCCAAGGTGGTGCCTTCGGCCATGGTCATGGAATCTTACACAATCCCATGGAATCAAATGAGAACACACAGAACCTTCAACTGCCACGAGATGCAAATATGGAAGTTACGATCATCCATAGTATAGCACGCATACATATAAGGGGTCTGGGGGACTTTATCCTCTGTCAGGTGCCAGTAGAAGTACCTTATTGGAATCAAGTTTTCAGGGACCTAGGATGGGCACTGATGGTGGATATTGGAAGGGCAACAAGCCTGTTCAAGATGCTTCTGAAGTATAGGCCTGAAGACAAAGCAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCTCAGGCAGAAACTGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAATCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATTGCTCATGTTGTCGATCCAGTTGAGTTGGTTGTATGGCTCCCTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

227

Amino Acids

26.13

Weight (kDa)

7.17

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	177 - 227	1.6e-09	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	106, 203, 364
AccB7I	CCANNNNNTGG	2 cut(s)	130, 625
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	177, 641
AcoI	YGGCCR	1 cut(s)	211
AcuI	CTGAAG	3 cut(s)	485, 498, 552
AfaI	GTAC	3 cut(s)	185, 378, 575
AfiI	CCNNNNNNNGG	4 cut(s)	130, 361, 412, 625
AgsI	TTSAA	5 cut(s)	40, 272, 454, 511, 548
AhdI	GACNNNNNGTC	1 cut(s)	63
AluBI	AGCT	2 cut(s)	43, 622
AluI	AGCT	2 cut(s)	43, 622
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	2 cut(s)	177, 641
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	4 cut(s)	74, 211, 473, 615
AspA2I	CCTAGG	1 cut(s)	406
AspS9I	GGNCC	2 cut(s)	403, 616
AsuHPI	GGTGA	2 cut(s)	113, 583
AvaII	GGWCC	1 cut(s)	403
AvrII	CCTAGG	1 cut(s)	406
BaeGI	GKGCMC	1 cut(s)	418
BanI	GGYRCC	3 cut(s)	106, 203, 364
BanII	GRGCYC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	486
BccI	CCATC	2 cut(s)	405, 415
BcoDI	GTCTC	1 cut(s)	584
BfaI	CTAG	2 cut(s)	101, 407
BglI	GCCNNNNNGGC	1 cut(s)	104
BlnI	CCTAGG	1 cut(s)	406
Bme18I	GGWCC	1 cut(s)	403
BmeRI	GACNNNNNGTC	1 cut(s)	63
BmgT120I	GGNCC	2 cut(s)	403, 616
BmiI	GGNNCC	5 cut(s)	108, 205, 366, 404, 671
BmsI	GCATC	2 cut(s)	274, 447
BpiI	GAAGAC	1 cut(s)	486
Bpu10I	CCTNAGC	1 cut(s)	519
BsaI	GGTCTC	1 cut(s)	584
BsaJI	CCNNGG	5 cut(s)	71, 196, 214, 240, 406
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 361, 412, 625
Bse1I	ACTGG	3 cut(s)	63, 368, 650
BseDI	CCNNGG	5 cut(s)	71, 196, 214, 240, 406
BseGI	GGATG	2 cut(s)	306, 416
BseLI	CCNNNNNNNGG	4 cut(s)	130, 361, 412, 625
BseMII	CTCAG	1 cut(s)	533
BseNI	ACTGG	3 cut(s)	63, 368, 650
BseRI	GAGGAG	2 cut(s)	23, 44
BseSI	GKGCMC	1 cut(s)	418
BseYI	CCCAGC	1 cut(s)	618
BshFI	GGCC	4 cut(s)	76, 213, 475, 617
BshNI	GGYRCC	3 cut(s)	106, 203, 364
BslFI	GGGAC	3 cut(s)	51, 359, 416
BslI	CCNNNNNNNGG	4 cut(s)	130, 361, 412, 625
BsmAI	GTCTC	1 cut(s)	584
BsmFI	GGGAC	3 cut(s)	51, 359, 416
BsnI	GGCC	4 cut(s)	76, 213, 475, 617
Bso31I	GGTCTC	1 cut(s)	584
Bsp1286I	GDGCHC	2 cut(s)	418, 520
Bsp143I	GATC	3 cut(s)	169, 303, 646
Bsp19I	CCATGG	2 cut(s)	214, 240
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	4 cut(s)	76, 213, 475, 617
BspCNI	CTCAG	1 cut(s)	532
BspLI	GGNNCC	5 cut(s)	108, 205, 366, 404, 671
BspPI	GGATC	2 cut(s)	177, 641
BspT107I	GGYRCC	3 cut(s)	106, 203, 364
BspTNI	GGTCTC	1 cut(s)	584
BsrI	ACTGG	3 cut(s)	63, 368, 650
BssECI	CCNNGG	5 cut(s)	71, 196, 214, 240, 406
BssMI	GATC	3 cut(s)	169, 303, 646
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	5 cut(s)	71, 196, 214, 240, 406
Bst2BI	CACGAG	1 cut(s)	279
Bst4CI	ACNGT	2 cut(s)	544, 578
BstC8I	GCNNGC	1 cut(s)	322
BstDEI	CTNAG	3 cut(s)	50, 191, 519
BstDSI	CCRYGG	2 cut(s)	214, 240
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	306, 416
BstKTI	GATC	3 cut(s)	172, 306, 649
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	3 cut(s)	169, 303, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstSLI	GKGCMC	1 cut(s)	418
BstV2I	GAAGAC	1 cut(s)	486
BstXI	CCANNNNNNTGG	2 cut(s)	84, 221
BsuRI	GGCC	4 cut(s)	76, 213, 475, 617
BtgI	CCRYGG	2 cut(s)	214, 240
BtsCI	GGATG	2 cut(s)	306, 416
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	322
CaiI	CAGNNNCTG	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	403, 616
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	3 cut(s)	184, 377, 574
CviAII	CATG	5 cut(s)	215, 221, 241, 587, 638
CviQI	GTAC	3 cut(s)	184, 377, 574
DdeI	CTNAG	3 cut(s)	50, 191, 519
DpnI	GATC	3 cut(s)	171, 305, 648
DpnII	GATC	3 cut(s)	169, 303, 646
DriI	GACNNNNNGTC	1 cut(s)	63
EaeI	YGGCCR	1 cut(s)	211
Eam1105I	GACNNNNNGTC	1 cut(s)	63
Eco130I	CCWWGG	5 cut(s)	71, 196, 214, 240, 406
Eco147I	AGGCCT	1 cut(s)	475
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	3 cut(s)	485, 498, 552
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	403
EcoT14I	CCWWGG	5 cut(s)	71, 196, 214, 240, 406
EcoT38I	GRGCYC	1 cut(s)	520
ErhI	CCWWGG	5 cut(s)	71, 196, 214, 240, 406
FaeI	CATG	5 cut(s)	218, 224, 244, 590, 641
FaqI	GGGAC	3 cut(s)	51, 359, 416
FatI	CATG	5 cut(s)	214, 220, 240, 586, 637
FokI	GGATG	2 cut(s)	293, 423
FriOI	GRGCYC	1 cut(s)	520
FspBI	CTAG	2 cut(s)	101, 407
GsaI	CCCAGC	1 cut(s)	622
HaeIII	GGCC	4 cut(s)	76, 213, 475, 617
HgaI	GACGC	1 cut(s)	491
Hin1II	CATG	5 cut(s)	218, 224, 244, 590, 641
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	3 cut(s)	225, 245, 388
HphI	GGTGA	2 cut(s)	113, 583
Hpy188I	TCNGA	1 cut(s)	465
Hpy188III	TCNNGA	3 cut(s)	16, 92, 454
HpyAV	CCTTC	6 cut(s)	13, 217, 278, 429, 490, 527
HpyCH4III	ACNGT	2 cut(s)	544, 578
HpyCH4V	TGCA	1 cut(s)	287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	50, 191, 519
Hsp92II	CATG	5 cut(s)	218, 224, 244, 590, 641
Kzo9I	GATC	3 cut(s)	169, 303, 646
LmnI	GCTCC	2 cut(s)	499, 675
LweI	GCATC	2 cut(s)	274, 447
MaeI	CTAG	2 cut(s)	101, 407
MaeIII	GTNAC	2 cut(s)	298, 589
MalI	GATC	3 cut(s)	171, 305, 648
MboI	GATC	3 cut(s)	169, 303, 646
MboII	GAAGA	2 cut(s)	491, 505
MhlI	GDGCHC	2 cut(s)	418, 520
MnlI	CCTC	6 cut(s)	4, 22, 25, 97, 365, 608
MslI	CAYNNNNRTG	2 cut(s)	82, 219
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	2 cut(s)	214, 240
NdeII	GATC	3 cut(s)	169, 303, 646
NlaIII	CATG	5 cut(s)	218, 224, 244, 590, 641
NlaIV	GGNNCC	5 cut(s)	108, 205, 366, 404, 671
NmuCI	GTSAC	1 cut(s)	589
PceI	AGGCCT	1 cut(s)	475
PfeI	GAWTC	3 cut(s)	225, 245, 388
PflMI	CCANNNNNTGG	2 cut(s)	130, 625
PpuMI	RGGWCCY	1 cut(s)	403
Psp5II	RGGWCCY	1 cut(s)	403
PspFI	CCCAGC	1 cut(s)	618
PspN4I	GGNNCC	5 cut(s)	108, 205, 366, 404, 671
PspPI	GGNCC	2 cut(s)	403, 616
PspPPI	RGGWCCY	1 cut(s)	403
PstNI	CAGNNNCTG	1 cut(s)	530
RsaI	GTAC	3 cut(s)	185, 378, 575
RsaNI	GTAC	3 cut(s)	184, 377, 574
RseI	CAYNNNNRTG	2 cut(s)	82, 219
Sau3AI	GATC	3 cut(s)	169, 303, 646
Sau96I	GGNCC	2 cut(s)	403, 616
SduI	GDGCHC	2 cut(s)	418, 520
SfaNI	GCATC	2 cut(s)	274, 447
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	2 cut(s)	82, 219
SseBI	AGGCCT	1 cut(s)	475
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	2 cut(s)	101, 407
StuI	AGGCCT	1 cut(s)	475
StyI	CCWWGG	5 cut(s)	71, 196, 214, 240, 406
TaaI	ACNGT	2 cut(s)	544, 578
TaqI	TCGA	2 cut(s)	91, 645
TfiI	GAWTC	3 cut(s)	225, 245, 388
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	1 cut(s)	589
Tsp45I	GTSAC	1 cut(s)	589
TspDTI	ATGAA	2 cut(s)	35, 126
TspRI	CASTG	1 cut(s)	423
Van91I	CCANNNNNTGG	2 cut(s)	130, 625
VpaK11BI	GGWCC	1 cut(s)	403
XagI	CCTNNNNNAGG	1 cut(s)	359
XmaJI	CCTAGG	1 cut(s)	406
XspI	CTAG	2 cut(s)	101, 407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.