Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

91017742 .. 91020050

Gene Structure 2309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG693800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGCTCCTGAAGTACAGGCCTGAAGACAAAGCCGAGAAGAAGGAGCGTCTTTTGAAAAGGGCGCAGGCAGAGACTGAAGGCAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATCGCTCATGATGTCGATCCAATTGAGTTGGTTGTATGGCTCCCTGCTTTATGCAGGAAGATGGAGATCCCCTACTGCATTGTGAAGGGCAAAGCACGTTTGGGAGCGATTGTTCACCAGAAAACTGCCTCAGTTTTGTGCCTAACAACGGTCAAGAATGAAGACAAAATGGAGTTCAGCAAGGTCTTGGAGGCTATCAAGGCCAACTTCAATGACAAGTATGAGGAATACAGGAAGAAGTGGGGTGGTGGCATCATGGGTTCCAAATCGCAGGCCAAGACCAAGGCAAAGGAGAGGCTCCTTGCCAAGGAAGCTGCTCAAAGAATGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

168

Amino Acids

19.13

Weight (kDa)

9.63

Isoelectric Point (pI)

23.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	25 - 116	1e-26	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AclWI	GGATC	2 cut(s)	185, 235
AcuI	CTGAAG	3 cut(s)	29, 42, 96
AfaI	GTAC	2 cut(s)	14, 119
AfiI	CCNNNNNNNGG	3 cut(s)	169, 322, 481
AgsI	TTSAA	3 cut(s)	55, 92, 385
AloI	GAACNNNNNNTCC	2 cut(s)	270, 302
AluBI	AGCT	2 cut(s)	166, 488
AluI	AGCT	2 cut(s)	166, 488
Alw26I	GTCTC	2 cut(s)	65, 128
AlwI	GGATC	2 cut(s)	185, 235
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	4 cut(s)	17, 159, 375, 447
ApeKI	GCWGC	1 cut(s)	488
AspLEI	GCGC	1 cut(s)	64
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	2 cut(s)	127, 281
BbsI	GAAGAC	2 cut(s)	30, 342
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	1 cut(s)	229
BcoDI	GTCTC	2 cut(s)	65, 128
BisI	GCNGC	1 cut(s)	489
BlsI	GCNGC	1 cut(s)	490
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	215, 436, 473
BmsI	GCATC	1 cut(s)	435
BpiI	GAAGAC	2 cut(s)	30, 342
BsaBI	GATNNNNATC	2 cut(s)	189, 239
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	456, 480
BsaXI	ACNNNNNCTCC	2 cut(s)	270, 300
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 322, 481
Bse8I	GATNNNNATC	2 cut(s)	189, 239
BseDI	CCNNGG	2 cut(s)	456, 480
BseJI	GATNNNNATC	2 cut(s)	189, 239
BseLI	CCNNNNNNNGG	3 cut(s)	169, 322, 481
BseMII	CTCAG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	475
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	4 cut(s)	19, 161, 377, 449
BslI	CCNNNNNNNGG	3 cut(s)	169, 322, 481
BsmAI	GTCTC	2 cut(s)	65, 128
BsnI	GGCC	4 cut(s)	19, 161, 377, 449
Bso31I	GGTCTC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	190, 240
BspANI	GGCC	4 cut(s)	19, 161, 377, 449
BspCNI	CTCAG	1 cut(s)	317
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	3 cut(s)	215, 436, 473
BspPI	GGATC	2 cut(s)	185, 235
BspTNI	GGTCTC	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	456, 480
BssMI	GATC	2 cut(s)	190, 240
BssT1I	CCWWGG	2 cut(s)	456, 480
Bst4CI	ACNGT	3 cut(s)	88, 122, 325
BstC8I	GCNNGC	2 cut(s)	66, 447
BstDEI	CTNAG	1 cut(s)	304
BstENI	CCTNNNNNAGG	1 cut(s)	479
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	2 cut(s)	193, 243
BstMAI	GTCTC	2 cut(s)	65, 128
BstMBI	GATC	2 cut(s)	190, 240
BstMWI	GCNNNNNNNGC	2 cut(s)	374, 485
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	2 cut(s)	30, 342
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuRI	GGCC	4 cut(s)	19, 161, 377, 449
Cac8I	GCNNGC	2 cut(s)	66, 447
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	181
CfoI	GCGC	1 cut(s)	64
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	13, 118
CviAII	CATG	3 cut(s)	131, 182, 430
CviQI	GTAC	2 cut(s)	13, 118
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	2 cut(s)	192, 242
DpnII	GATC	2 cut(s)	190, 240
Eco130I	CCWWGG	2 cut(s)	456, 480
Eco147I	AGGCCT	1 cut(s)	19
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	3 cut(s)	29, 42, 96
EcoNI	CCTNNNNNAGG	1 cut(s)	479
EcoT14I	CCWWGG	2 cut(s)	456, 480
ErhI	CCWWGG	2 cut(s)	456, 480
FaeI	CATG	3 cut(s)	134, 185, 433
FaiI	YATR	6 cut(s)	132, 183, 211, 226, 396, 431
FalI	AAGNNNNNCTT	3 cut(s)	365, 397, 487
FatI	CATG	3 cut(s)	130, 181, 429
Fnu4HI	GCNGC	1 cut(s)	489
Fsp4HI	GCNGC	1 cut(s)	489
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	489
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	4 cut(s)	19, 161, 377, 449
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	134, 185, 433
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HphI	GGTGA	2 cut(s)	127, 281
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	7, 182, 328
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	3 cut(s)	34, 71, 253
HpyCH4III	ACNGT	3 cut(s)	88, 122, 325
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	2 cut(s)	228, 252
HpyF10VI	GCNNNNNNNGC	2 cut(s)	374, 485
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	3 cut(s)	134, 185, 433
HspAI	GCGC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	190, 240
LmnI	GCTCC	5 cut(s)	9, 43, 219, 278, 477
LpnPI	CCDG	9 cut(s)	20, 33, 50, 176, 214, 231, 305, 391, 431
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	1 cut(s)	435
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	2 cut(s)	192, 242
MboI	GATC	2 cut(s)	190, 240
MboII	GAAGA	5 cut(s)	35, 49, 244, 347, 421
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	1 cut(s)	240
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	5 cut(s)	152, 313, 358, 391, 462
MseI	TTAA	1 cut(s)	505
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	374, 485
NdeII	GATC	2 cut(s)	190, 240
NlaIII	CATG	3 cut(s)	134, 185, 433
NlaIV	GGNNCC	3 cut(s)	215, 436, 473
NmeAIII	GCCGAG	1 cut(s)	58
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	3 cut(s)	215, 436, 473
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	2 cut(s)	14, 119
RsaNI	GTAC	2 cut(s)	13, 118
SaqAI	TTAA	1 cut(s)	505
SatI	GCNGC	1 cut(s)	489
Sau3AI	GATC	2 cut(s)	190, 240
Sau96I	GGNCC	1 cut(s)	160
SetI	ASST	6 cut(s)	140, 144, 168, 274, 360, 490
SfaNI	GCATC	1 cut(s)	435
Sse9I	AATT	1 cut(s)	195
SseBI	AGGCCT	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	19
StyI	CCWWGG	2 cut(s)	456, 480
TaaI	ACNGT	3 cut(s)	88, 122, 325
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	189
TasI	AATT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	505
Tru9I	TTAA	1 cut(s)	505
TseFI	GTSAC	1 cut(s)	133
TseI	GCWGC	1 cut(s)	488
Tsp45I	GTSAC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	348
Van91I	CCANNNNNTGG	1 cut(s)	169
XagI	CCTNNNNNAGG	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.