Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

32366168 .. 32368317

Gene Structure 2150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAGAGAAGAAGATGATAGAGGAGGTCAAGAAGGCTTACAAGGAGGATTTGAAGCTTCATCTAAGAATGACAACCAGTCCCCCAAGGCCACAGAATGGTATCAAGAAGCCCTAGAGGCATCGCCACACTTTCACCAACAGGTCCCATGGAATCAAATGAGAACACACGAACCTTCAACTGCCACGGAGATGCAAATATGGAACAACAAGCCTGTTCAAGATGCTTCGAAGTATAGGCCCGAAGACAAAGCGAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCTCGGGCGAGACCGAAGGAAAGACGTTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATCGCTCATGATGTCGATCCAGTTGAGTTGGTTGTATGGCTCCCCGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

148

Amino Acids

16.76

Weight (kDa)

5.02

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	101 - 148	1.1e-10	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	96, 388
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	1 cut(s)	404
AfaI	GTAC	1 cut(s)	338
AfiI	CCNNNNNNNGG	2 cut(s)	96, 388
AgsI	TTSAA	5 cut(s)	53, 177, 218, 275, 311
AhdI	GACNNNNNGTC	1 cut(s)	76
AluBI	AGCT	2 cut(s)	56, 385
AluI	AGCT	2 cut(s)	56, 385
Alw26I	GTCTC	2 cut(s)	284, 347
AlwI	GGATC	1 cut(s)	404
Ama87I	CYCGRG	1 cut(s)	283
AoxI	GGCC	3 cut(s)	87, 236, 378
AspS9I	GGNCC	3 cut(s)	142, 237, 379
AsuHPI	GGTGA	2 cut(s)	125, 346
AsuII	TTCGAA	1 cut(s)	227
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	284, 347
BfaI	CTAG	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	142
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	142, 237, 379
BmiI	GGNNCC	2 cut(s)	144, 434
BmsI	GCATC	3 cut(s)	128, 180, 211
BpiI	GAAGAC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	227
BsaBI	GATNNNNATC	1 cut(s)	408
BsaI	GGTCTC	2 cut(s)	284, 347
BsaJI	CCNNGG	3 cut(s)	84, 146, 183
Bsc4I	CCNNNNNNNGG	2 cut(s)	96, 388
Bse1I	ACTGG	2 cut(s)	76, 413
Bse8I	GATNNNNATC	1 cut(s)	408
BseDI	CCNNGG	3 cut(s)	84, 146, 183
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	96, 388
BseNI	ACTGG	2 cut(s)	76, 413
BseRI	GAGGAG	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	381
BshFI	GGCC	3 cut(s)	89, 238, 380
BsiHKCI	CYCGRG	1 cut(s)	283
BslFI	GGGAC	2 cut(s)	64, 128
BslI	CCNNNNNNNGG	2 cut(s)	96, 388
BsmAI	GTCTC	2 cut(s)	284, 347
BsmFI	GGGAC	2 cut(s)	64, 128
BsnI	GGCC	3 cut(s)	89, 238, 380
Bso31I	GGTCTC	2 cut(s)	284, 347
BsoBI	CYCGRG	1 cut(s)	283
Bsp119I	TTCGAA	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	409
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	438
BspANI	GGCC	3 cut(s)	89, 238, 380
BspHI	TCATGA	1 cut(s)	400
BspLI	GGNNCC	2 cut(s)	144, 434
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	1 cut(s)	227
BspTNI	GGTCTC	2 cut(s)	284, 347
BsrI	ACTGG	2 cut(s)	76, 413
BssECI	CCNNGG	3 cut(s)	84, 146, 183
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	2 cut(s)	84, 146
Bst4CI	ACNGT	1 cut(s)	341
BstBI	TTCGAA	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	2 cut(s)	146, 183
BstKTI	GATC	1 cut(s)	412
BstMAI	GTCTC	2 cut(s)	284, 347
BstMBI	GATC	1 cut(s)	409
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstV2I	GAAGAC	1 cut(s)	249
BsuRI	GGCC	3 cut(s)	89, 238, 380
BtgI	CCRYGG	2 cut(s)	146, 183
BtgZI	GCGATG	1 cut(s)	105
CciI	TCATGA	1 cut(s)	400
Cfr13I	GGNCC	3 cut(s)	142, 237, 379
CseI	GACGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	337
CviAII	CATG	3 cut(s)	147, 350, 401
CviQI	GTAC	1 cut(s)	337
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1105I	GACNNNNNGTC	1 cut(s)	76
Eco130I	CCWWGG	2 cut(s)	84, 146
Eco24I	GRGCYC	1 cut(s)	284
Eco31I	GGTCTC	2 cut(s)	284, 347
Eco47I	GGWCC	1 cut(s)	142
Eco88I	CYCGRG	1 cut(s)	283
EcoO109I	RGGNCCY	1 cut(s)	142
EcoT14I	CCWWGG	2 cut(s)	84, 146
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	2 cut(s)	84, 146
FaeI	CATG	3 cut(s)	150, 353, 404
FaiI	YATR	7 cut(s)	148, 199, 234, 351, 402, 430, 445
FaqI	GGGAC	2 cut(s)	64, 128
FatI	CATG	3 cut(s)	146, 349, 400
FauI	CCCGC	1 cut(s)	445
FriOI	GRGCYC	1 cut(s)	284
FspBI	CTAG	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	385
HaeIII	GGCC	3 cut(s)	89, 238, 380
HgaI	GACGC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	150, 353, 404
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	1 cut(s)	151
HphI	GGTGA	2 cut(s)	125, 346
Hpy188III	TCNNGA	4 cut(s)	29, 104, 218, 401
HpyAV	CCTTC	4 cut(s)	26, 183, 254, 290
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	1 cut(s)	305
HpyCH4V	TGCA	1 cut(s)	193
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	63
HpySE526I	ACGT	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	150, 353, 404
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	2 cut(s)	263, 438
LpnPI	CCDG	5 cut(s)	89, 125, 225, 395, 426
LweI	GCATC	3 cut(s)	128, 180, 211
MaeI	CTAG	1 cut(s)	113
MaeII	ACGT	1 cut(s)	305
MaeIII	GTNAC	1 cut(s)	352
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	4 cut(s)	20, 23, 254, 269
MhlI	GDGCHC	1 cut(s)	284
MnlI	CCTC	5 cut(s)	14, 17, 38, 109, 371
MslI	CAYNNNNRTG	1 cut(s)	188
MwoI	GCNNNNNNNGC	1 cut(s)	116
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	3 cut(s)	150, 353, 404
NlaIV	GGNNCC	2 cut(s)	144, 434
NmuCI	GTSAC	1 cut(s)	352
NspV	TTCGAA	1 cut(s)	227
PagI	TCATGA	1 cut(s)	400
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	2 cut(s)	96, 388
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	381
PspN4I	GGNNCC	2 cut(s)	144, 434
PspPI	GGNCC	3 cut(s)	142, 237, 379
PspPPI	RGGWCCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	338
RsaNI	GTAC	1 cut(s)	337
RseI	CAYNNNNRTG	1 cut(s)	188
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	3 cut(s)	142, 237, 379
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	8 cut(s)	28, 58, 144, 175, 308, 359, 363, 387
SfaNI	GCATC	3 cut(s)	128, 180, 211
SfuI	TTCGAA	1 cut(s)	227
SinI	GGWCC	1 cut(s)	142
SmiMI	CAYNNNNRTG	1 cut(s)	188
SsiI	CCGC	1 cut(s)	438
SspMI	CTAG	1 cut(s)	113
StyI	CCWWGG	2 cut(s)	84, 146
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	1 cut(s)	308
TaqI	TCGA	2 cut(s)	227, 408
TaqII	GACCGA	1 cut(s)	308
TfiI	GAWTC	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	352
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	1 cut(s)	48
TspGWI	ACGGA	1 cut(s)	200
Van91I	CCANNNNNTGG	2 cut(s)	96, 388
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.