Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

72253055 .. 72253889

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG502100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGCTTCTGAAGTATAGGCCTGAAGACAAAGCAGAGAAGGAGCGTCTTTTGAAAAGGGCTCAGGCAGAAACTGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAATCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATTGCTCATGATGTCGATCCAGTTGAGTTGGTTGTATGGCTCCCTGCTTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

74

Amino Acids

8.48

Weight (kDa)

7.99

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	24 - 74	7.4e-12	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	166
AclWI	GGATC	1 cut(s)	182
AcuI	CTGAAG	3 cut(s)	29, 42, 93
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	2 cut(s)	52, 89
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	125
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	2 cut(s)	17, 156
AspS9I	GGNCC	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	157
BmiI	GGNNCC	1 cut(s)	212
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	60
BsaBI	GATNNNNATC	1 cut(s)	186
BsaI	GGTCTC	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	191
Bse8I	GATNNNNATC	1 cut(s)	186
BseJI	GATNNNNATC	1 cut(s)	186
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	191
BseYI	CCCAGC	1 cut(s)	159
BshFI	GGCC	2 cut(s)	19, 158
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	125
BsnI	GGCC	2 cut(s)	19, 158
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	19, 158
BspCNI	CTCAG	1 cut(s)	73
BspHI	TCATGA	1 cut(s)	178
BspLI	GGNNCC	1 cut(s)	212
BspPI	GGATC	1 cut(s)	182
BspTNI	GGTCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	1 cut(s)	187
Bst4CI	ACNGT	2 cut(s)	85, 119
BstDEI	CTNAG	1 cut(s)	60
BstKTI	GATC	1 cut(s)	190
BstMAI	GTCTC	1 cut(s)	125
BstMBI	GATC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	19, 158
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	157
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	2 cut(s)	128, 179
CviJI	RGCY	7 cut(s)	19, 59, 92, 100, 158, 163, 211
CviKI_1	RGCY	7 cut(s)	19, 59, 92, 100, 158, 163, 211
CviQI	GTAC	1 cut(s)	115
DdeI	CTNAG	1 cut(s)	60
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	61
Eco31I	GGTCTC	1 cut(s)	125
Eco57I	CTGAAG	3 cut(s)	29, 42, 93
EcoT38I	GRGCYC	1 cut(s)	61
FaeI	CATG	2 cut(s)	131, 182
FaiI	YATR	5 cut(s)	15, 129, 180, 208, 223
FatI	CATG	2 cut(s)	127, 178
FriOI	GRGCYC	1 cut(s)	61
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	2 cut(s)	19, 158
HgaI	GACGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	131, 182
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	31, 68
HpyCH4III	ACNGT	2 cut(s)	85, 119
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	2 cut(s)	131, 182
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	40, 216
LpnPI	CCDG	4 cut(s)	33, 47, 173, 204
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	1 cut(s)	35
MhlI	GDGCHC	1 cut(s)	61
MnlI	CCTC	1 cut(s)	149
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	131, 182
NlaIV	GGNNCC	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	157
PstNI	CAGNNNCTG	1 cut(s)	71
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
Sau3AI	GATC	1 cut(s)	187
Sau96I	GGNCC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	61
SetI	ASST	3 cut(s)	137, 141, 165
SgeI	CNNG	9 cut(s)	32, 74, 106, 140, 166, 172, 176, 191, 203
SseBI	AGGCCT	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	85, 119
TaqI	TCGA	1 cut(s)	186
TseFI	GTSAC	1 cut(s)	130
Tsp45I	GTSAC	1 cut(s)	130
Van91I	CCANNNNNTGG	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.