Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

17986843 .. 17988276

Gene Structure 1434 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGATCCTTAAGCAACGTTTGAAGGTCCCACCAGCACTTAACCAGTTCACCAAGACTCTGGACAAGAACCTCGCTACAAGTCTCTTCAAGTTGCTTCTGAAGTACAGGCCCGAAGACAAAGCTGCAAAGAGGGAACGCCTTCTGAAAAGAGCTCAAGAGGAATCTGAAGGAAAAACTGTTGAGGCAAAGAAGCCTATTGTTCTGAAATATGGACTTAACCATGTCACCTACCTGATTGAGCAGAACAAGGCTCAGCTTGTTGTTATTGCTCACGATGTGGACCCTATCGAGTTGGTTGTATGGCTTCCTGCCTTGTGCAGGAAGATGGAGATCGCATACTGCATTGTGAAGGGGAAATCCCGTCTTGGAGCACTTCTCCACAAGAAAACTGCTGCTGCACTTTGTTTGACCACCGTTAAGAATGAGGATAAGCTTGAGTTCAGCAAAATTCTGGAGGCTATCAAGGCCAACTTCAACGATAAGTACGAGGAGTTGAGAAAGAAGTGGGGAGGCGGTATCATGGGTGCCAAATCACAGGCCAAGACCAAGGCGAAGGAGAAGCTCTTAGCAAAGGAAGCCGCACAGAGGTTGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

199

Amino Acids

22.43

Weight (kDa)

9.85

Isoelectric Point (pI)

30.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	56 - 144	3.3e-25	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	2 cut(s)	513, 579
AclI	AACGTT	1 cut(s)	16
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	2 cut(s)	119, 186
AdeI	CACNNNGTG	1 cut(s)	277
AfaI	GTAC	2 cut(s)	104, 485
AfiI	CCNNNNNNNGG	2 cut(s)	318, 585
AflII	CTTAAG	1 cut(s)	8
AgsI	TTSAA	4 cut(s)	22, 88, 475, 592
AluBI	AGCT	5 cut(s)	122, 152, 256, 433, 562
AluI	AGCT	5 cut(s)	122, 152, 256, 433, 562
Alw21I	GWGCWC	2 cut(s)	154, 373
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	3 cut(s)	107, 465, 537
ApeKI	GCWGC	3 cut(s)	122, 392, 395
ApoI	RAATTY	1 cut(s)	447
Asp700I	GAANNNNTTC	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	25, 108, 280
AsuHPI	GGTGA	2 cut(s)	40, 217
AvaII	GGWCC	2 cut(s)	25, 280
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	2 cut(s)	154, 373
BbvI	GCAGC	3 cut(s)	109, 379, 382
BccI	CCATC	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	8
BisI	GCNGC	4 cut(s)	123, 393, 396, 579
BlpI	GCTNAGC	1 cut(s)	252
BlsI	GCNGC	4 cut(s)	124, 394, 397, 580
Bme18I	GGWCC	2 cut(s)	25, 280
BmgT120I	GGNCC	3 cut(s)	25, 108, 280
BmiI	GGNNCC	3 cut(s)	27, 282, 526
BpiI	GAAGAC	1 cut(s)	120
BplI	GAGNNNNNCTC	2 cut(s)	360, 392
BpmI	CTGGAG	1 cut(s)	473
Bpu1102I	GCTNAGC	1 cut(s)	252
BpuEI	CTTGAG	2 cut(s)	138, 455
BsaBI	GATNNNNATC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	546
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 585
Bse1I	ACTGG	1 cut(s)	43
Bse8I	GATNNNNATC	1 cut(s)	329
BseDI	CCNNGG	1 cut(s)	546
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	318, 585
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	3 cut(s)	109, 379, 382
BsgI	GTGCAG	2 cut(s)	337, 381
BshFI	GGCC	3 cut(s)	109, 467, 539
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	2 cut(s)	154, 373
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	2 cut(s)	318, 585
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	3 cut(s)	109, 467, 539
Bsp1286I	GDGCHC	2 cut(s)	154, 373
Bsp143I	GATC	2 cut(s)	3, 330
Bsp1720I	GCTNAGC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	513, 579
BspANI	GGCC	3 cut(s)	109, 467, 539
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	3 cut(s)	27, 282, 526
BspT107I	GGYRCC	1 cut(s)	524
BspTI	CTTAAG	1 cut(s)	8
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	546
BssMI	GATC	2 cut(s)	3, 330
BssT1I	CCWWGG	1 cut(s)	546
Bst4CI	ACNGT	2 cut(s)	178, 415
Bst6I	CTCTTC	1 cut(s)	89
BstAFI	CTTAAG	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	252, 565
BstENI	CCTNNNNNAGG	1 cut(s)	316
BstKTI	GATC	2 cut(s)	6, 333
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	3, 330
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 575
BstV1I	GCAGC	3 cut(s)	109, 379, 382
BstV2I	GAAGAC	1 cut(s)	120
BstXI	CCANNNNNNTGG	1 cut(s)	58
BsuRI	GGCC	3 cut(s)	109, 467, 539
Cfr13I	GGNCC	3 cut(s)	25, 108, 280
Csp6I	GTAC	2 cut(s)	103, 484
CviAII	CATG	2 cut(s)	221, 520
CviQI	GTAC	2 cut(s)	103, 484
DdeI	CTNAG	2 cut(s)	252, 565
DpnI	GATC	2 cut(s)	5, 332
DpnII	GATC	2 cut(s)	3, 330
DraIII	CACNNNGTG	1 cut(s)	277
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Ecl136II	GAGCTC	1 cut(s)	152
Eco130I	CCWWGG	1 cut(s)	546
Eco24I	GRGCYC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	25, 280
Eco53kI	GAGCTC	1 cut(s)	152
Eco57I	CTGAAG	2 cut(s)	119, 186
EcoICRI	GAGCTC	1 cut(s)	152
EcoNI	CCTNNNNNAGG	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	25
EcoT14I	CCWWGG	1 cut(s)	546
EcoT38I	GRGCYC	1 cut(s)	154
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	2 cut(s)	224, 523
FaiI	YATR	5 cut(s)	210, 222, 301, 337, 521
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FaqI	GGGAC	1 cut(s)	11
FatI	CATG	2 cut(s)	220, 519
Fnu4HI	GCNGC	4 cut(s)	123, 393, 396, 579
FriOI	GRGCYC	1 cut(s)	154
Fsp4HI	GCNGC	4 cut(s)	123, 393, 396, 579
GluI	GCNGC	4 cut(s)	123, 393, 396, 579
GsuI	CTGGAG	1 cut(s)	473
HaeIII	GGCC	3 cut(s)	109, 467, 539
Hin1II	CATG	2 cut(s)	224, 523
HindIII	AAGCTT	1 cut(s)	431
HinfI	GANTC	2 cut(s)	55, 161
HphI	GGTGA	2 cut(s)	40, 217
Hpy166II	GTNNAC	2 cut(s)	48, 280
Hpy188I	TCNGA	4 cut(s)	99, 144, 166, 204
Hpy188III	TCNNGA	4 cut(s)	59, 155, 272, 452
Hpy8I	GTNNAC	2 cut(s)	48, 280
HpyAV	CCTTC	5 cut(s)	16, 149, 161, 343, 547
HpyCH4III	ACNGT	2 cut(s)	178, 415
HpyCH4IV	ACGT	1 cut(s)	16
HpyCH4V	TGCA	4 cut(s)	125, 318, 342, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 575
HpyF3I	CTNAG	2 cut(s)	252, 565
HpySE526I	ACGT	1 cut(s)	16
Hsp92II	CATG	2 cut(s)	224, 523
Kzo9I	GATC	2 cut(s)	3, 330
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	9 cut(s)	44, 45, 56, 91, 245, 304, 321, 437, 521
Lsp1109I	GCAGC	3 cut(s)	109, 379, 382
MaeII	ACGT	1 cut(s)	16
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	5, 332
MboI	GATC	2 cut(s)	3, 330
MboII	GAAGA	3 cut(s)	76, 125, 334
MhlI	GDGCHC	2 cut(s)	154, 373
MluCI	AATT	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	9 cut(s)	80, 123, 151, 175, 418, 448, 481, 503, 579
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	4 cut(s)	9, 39, 216, 417
MspCI	CTTAAG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	464, 575
NdeII	GATC	2 cut(s)	3, 330
NlaIII	CATG	2 cut(s)	224, 523
NlaIV	GGNNCC	3 cut(s)	27, 282, 526
NmuCI	GTSAC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	483
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	124, 394, 397, 580
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PpuMI	RGGWCCY	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	154
Psp1406I	AACGTT	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	25
PspN4I	GGNNCC	3 cut(s)	27, 282, 526
PspPI	GGNCC	3 cut(s)	25, 108, 280
PspPPI	RGGWCCY	1 cut(s)	25
RsaI	GTAC	2 cut(s)	104, 485
RsaNI	GTAC	2 cut(s)	103, 484
SacI	GAGCTC	1 cut(s)	154
SaqAI	TTAA	4 cut(s)	9, 39, 216, 417
SatI	GCNGC	4 cut(s)	123, 393, 396, 579
Sau3AI	GATC	2 cut(s)	3, 330
Sau96I	GGNCC	3 cut(s)	25, 108, 280
SchI	GAGTC	1 cut(s)	49
SduI	GDGCHC	2 cut(s)	154, 373
SinI	GGWCC	2 cut(s)	25, 280
SmlI	CTYRAG	3 cut(s)	8, 153, 434
SmoI	CTYRAG	3 cut(s)	8, 153, 434
Sse9I	AATT	1 cut(s)	447
SsiI	CCGC	2 cut(s)	513, 579
SstI	GAGCTC	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	2 cut(s)	178, 415
TaiI	ACGT	1 cut(s)	19
TaqI	TCGA	1 cut(s)	288
TasI	AATT	1 cut(s)	447
TatI	WGTACW	1 cut(s)	102
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	4 cut(s)	9, 39, 216, 417
Tru9I	TTAA	4 cut(s)	9, 39, 216, 417
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	122, 392, 395
Tsp45I	GTSAC	1 cut(s)	223
Vha464I	CTTAAG	1 cut(s)	8
VpaK11BI	GGWCC	2 cut(s)	25, 280
XagI	CCTNNNNNAGG	1 cut(s)	316
XapI	RAATTY	1 cut(s)	447
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.