Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Forward (+)

33239206 .. 33239529

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31721

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGTTCAAGATGCTTCTGAAGTATAGGCCTGAAGACAAAGCAGAGAAGAAGGAGCGTCTTTTGAAAAGGGCTCAGGCAGAGACTGAAGGAAAGACTGTTGAAGCCAAGAAGCCTATTGTTGTGAAGTACGGTCTCAACCATGTCACCTACCTCATTGAGCAGAACAAGGCCCAGCTTGTGGTTATTGCTCATGATGTCGATCCAGTTGAGTTGGTTGTATGGCTCCCTGCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

78

Amino Acids

9.05

Weight (kDa)

9.22

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L7Ae	PF01248	28 - 78	1.2e-11	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AclWI	GGATC	1 cut(s)	194
AcuI	CTGAAG	3 cut(s)	38, 51, 105
AfaI	GTAC	1 cut(s)	128
AfiI	CCNNNNNNNGG	1 cut(s)	178
AgsI	TTSAA	3 cut(s)	7, 64, 101
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
Alw26I	GTCTC	2 cut(s)	74, 137
AlwI	GGATC	1 cut(s)	194
AlwNI	CAGNNNCTG	1 cut(s)	83
AoxI	GGCC	2 cut(s)	26, 168
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	136
BanII	GRGCYC	1 cut(s)	73
BbsI	GAAGAC	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	74, 137
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	224
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	198
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	28, 170
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	74, 137
BsnI	GGCC	2 cut(s)	28, 170
Bso31I	GGTCTC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	199
BspANI	GGCC	2 cut(s)	28, 170
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	194
BspTNI	GGTCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	199
Bst4CI	ACNGT	2 cut(s)	97, 131
BstDEI	CTNAG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	202
BstMAI	GTCTC	2 cut(s)	74, 137
BstMBI	GATC	1 cut(s)	199
BstV2I	GAAGAC	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	28, 170
CaiI	CAGNNNCTG	1 cut(s)	83
CciI	TCATGA	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	127
CviAII	CATG	2 cut(s)	140, 191
CviJI	RGCY	7 cut(s)	28, 71, 104, 112, 170, 175, 223
CviKI_1	RGCY	7 cut(s)	28, 71, 104, 112, 170, 175, 223
CviQI	GTAC	1 cut(s)	127
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	201
DpnII	GATC	1 cut(s)	199
Eco147I	AGGCCT	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	73
Eco31I	GGTCTC	1 cut(s)	137
Eco57I	CTGAAG	3 cut(s)	38, 51, 105
EcoT38I	GRGCYC	1 cut(s)	73
FaeI	CATG	2 cut(s)	143, 194
FaiI	YATR	4 cut(s)	24, 141, 192, 220
FatI	CATG	2 cut(s)	139, 190
FriOI	GRGCYC	1 cut(s)	73
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	28, 170
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	2 cut(s)	143, 194
HphI	GGTGA	1 cut(s)	136
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	2 cut(s)	7, 191
HpyAV	CCTTC	2 cut(s)	43, 80
HpyCH4III	ACNGT	2 cut(s)	97, 131
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	143, 194
Kzo9I	GATC	1 cut(s)	199
LmnI	GCTCC	2 cut(s)	52, 228
LpnPI	CCDG	4 cut(s)	42, 59, 185, 216
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	1 cut(s)	201
MboI	GATC	1 cut(s)	199
MboII	GAAGA	2 cut(s)	44, 58
MhlI	GDGCHC	1 cut(s)	73
MnlI	CCTC	1 cut(s)	161
NdeII	GATC	1 cut(s)	199
NlaIII	CATG	2 cut(s)	143, 194
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	142
PagI	TCATGA	1 cut(s)	190
PceI	AGGCCT	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	178
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	1 cut(s)	224
PspPI	GGNCC	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	83
RsaI	GTAC	1 cut(s)	128
RsaNI	GTAC	1 cut(s)	127
Sau3AI	GATC	1 cut(s)	199
Sau96I	GGNCC	1 cut(s)	169
SduI	GDGCHC	1 cut(s)	73
SetI	ASST	3 cut(s)	149, 153, 177
SseBI	AGGCCT	1 cut(s)	28
StuI	AGGCCT	1 cut(s)	28
TaaI	ACNGT	2 cut(s)	97, 131
TaqI	TCGA	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	142
Tsp45I	GTSAC	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.