Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000217.1

Orthogroup ID

OG0001102

Physical Location & Seq

Genomic Coordinates Reverse (-)

51118 .. 51432

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000217.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atgcttctgaagtataggcctgaagacaaagcagagaagaaggagcgtcttttgaaaagggctcaggcagagactgaaggaaagactgttgaagccaagaagcctattgttgtgaagtacggtctccaccatgtcacctacctcattgagcagaacaaggcccagcttgtggttattgctcatgatgtcgatccagttgagttggttgtatggctccctgctttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000470 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L7Ae

Protein Analysis

75

Amino Acids

8.63

Weight (kDa)

8.93

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001102)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47610 AT3G62870
fragaria_vesca	FvH4_6g53860 FvH4_6g53860 FvH4_7g05790 FvH4_7g05790 FvH4_7g05790
malus_domestica	MD06G1137700.v1.1 MD09G1007800.v1.1 MD14G1152500.v1.1 MD17G1002900.v1.1 MD17G1011700.v1.1
prunus_persica	Prupe.3G309200_v2.0.a1 Prupe.5G147500_v2.0.a1
pyrus_communis	pycom06g12890 pycom17g00640
rosa_chinensis	RchiOBHm_Chr1g0332881 RchiOBHm_Chr2g0176011 RchiOBHm_Chr3g0487691 RchiOBHm_Chr5g0033111 RchiOBHm_Chr5g0038601
rosa_laevigata	RLG00000022373 RLG00000022905 RLG00000024502 RLG00000029641
rosa_multiflora	Rmu_co8267901.1_g000001 Rmu_sc0000217.1_g000013 Rmu_sc0000334.1_g000062 Rmu_sc0001786.1_g000006 Rmu_sc0003179.1_g000052 Rmu_sc0003238.1_g000029 Rmu_sc0003916.1_g000021 Rmu_sc0011915.1_g000016
rosa_roxburghii	Rroxscaffold_1G00043430 Rroxscaffold_2G00076850 Rroxscaffold_2G00135400 Rroxscaffold_3G00240570 Rroxscaffold_4G00312550 Rroxscaffold_4G00317940 Rroxscaffold_6G00404320 Rroxscaffold_7G00190770
rosa_rugosa	Rorug01G0103000 Rorug01G0103100 Rorug02G0212200.1 Rorug02G0589500 Rorug03G0296400 Rorug03G0296400
rosa_samantha	Rh1AG128700 Rh1BG098000 Rh1CG122500 Rh2BG680100 Rh2CG643000 Rh2DG502100 Rh2DG693800 Rh5CG577800 Rh6AG092600 Rh6DG075600
rosa_wichuraiana	Rw1G010480 Rw2G054820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AclWI	GGATC	1 cut(s)	185
AcuI	CTGAAG	3 cut(s)	29, 42, 96
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	55, 92
AluBI	AGCT	1 cut(s)	166
AluI	AGCT	1 cut(s)	166
Alw26I	GTCTC	2 cut(s)	65, 128
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	2 cut(s)	17, 159
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	30
BcoDI	GTCTC	2 cut(s)	65, 128
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	128
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	194
Bse8I	GATNNNNATC	1 cut(s)	189
BseJI	GATNNNNATC	1 cut(s)	189
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	77
BseNI	ACTGG	1 cut(s)	194
BseYI	CCCAGC	1 cut(s)	162
BshFI	GGCC	2 cut(s)	19, 161
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	2 cut(s)	65, 128
BsnI	GGCC	2 cut(s)	19, 161
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	1 cut(s)	190
BspANI	GGCC	2 cut(s)	19, 161
BspCNI	CTCAG	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	194
BssMI	GATC	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	88, 122
BstDEI	CTNAG	1 cut(s)	63
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	2 cut(s)	65, 128
BstMBI	GATC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	2 cut(s)	19, 161
CaiI	CAGNNNCTG	1 cut(s)	74
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	131, 182
CviJI	RGCY	7 cut(s)	19, 62, 95, 103, 161, 166, 214
CviKI_1	RGCY	7 cut(s)	19, 62, 95, 103, 161, 166, 214
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
Eco147I	AGGCCT	1 cut(s)	19
Eco24I	GRGCYC	1 cut(s)	64
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	3 cut(s)	29, 42, 96
EcoT38I	GRGCYC	1 cut(s)	64
FaeI	CATG	2 cut(s)	134, 185
FaiI	YATR	5 cut(s)	15, 132, 183, 211, 226
FatI	CATG	2 cut(s)	130, 181
FriOI	GRGCYC	1 cut(s)	64
GsaI	CCCAGC	1 cut(s)	166
HaeIII	GGCC	2 cut(s)	19, 161
HgaI	GACGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	134, 185
HphI	GGTGA	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	9
Hpy188III	TCNNGA	1 cut(s)	182
HpyAV	CCTTC	2 cut(s)	34, 71
HpyCH4III	ACNGT	2 cut(s)	88, 122
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	2 cut(s)	134, 185
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	2 cut(s)	43, 219
LpnPI	CCDG	4 cut(s)	33, 50, 176, 207
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	2 cut(s)	35, 49
MhlI	GDGCHC	1 cut(s)	64
MnlI	CCTC	1 cut(s)	152
NdeII	GATC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	134, 185
NlaIV	GGNNCC	1 cut(s)	215
NmuCI	GTSAC	1 cut(s)	133
PagI	TCATGA	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	162
PspN4I	GGNNCC	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	3 cut(s)	140, 144, 168
SgeI	CNNG	9 cut(s)	32, 77, 109, 143, 169, 175, 179, 194, 206
SseBI	AGGCCT	1 cut(s)	19
StuI	AGGCCT	1 cut(s)	19
TaaI	ACNGT	2 cut(s)	88, 122
TaqI	TCGA	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	133
Van91I	CCANNNNNTGG	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.